Toll - interleukin 1 - resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 34 - 182 | 1.7e-48 | TIR domain |
| TIR_2 | PF13676 | 37 - 146 | 5.9e-14 | TIR domain |
| NB-ARC | PF00931 | 194 - 301 | 1.3e-08 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 367 - 435 | 5.7e-20 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 676 - 760 | 3e-18 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 687 - 742 | 4.4e-08 | Leucine rich repeat |
| LRR_14 | PF23598 | 728 - 808 | 2.8e-17 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 733 - 790 | 1.8e-07 | Leucine rich repeat |
| LRR_14 | PF23598 | 803 - 852 | 1e-07 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 825 - 882 | 9.7e-06 | Leucine rich repeat |
| LRR_14 | PF23598 | 843 - 898 | 6.4e-10 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 893 - 949 | 6.5e-09 | Leucine rich repeat |
| LRR_4 | PF12799 | 894 - 931 | 1e-05 | Leucine Rich repeats (2 copies) |
| LRR_14 | PF23598 | 898 - 969 | 1.3e-14 | Leucine-rich repeat region |
| LRR_4 | PF12799 | 962 - 1000 | 8.7e-06 | Leucine Rich repeats (2 copies) |
| LRR_14 | PF23598 | 967 - 1013 | 1.1e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 984 - 1159 | 1.6e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 1007 - 1084 | 4.2e-16 | Leucine-rich repeat region |
| LRR_4 | PF12799 | 1055 - 1092 | 7.6e-06 | Leucine Rich repeats (2 copies) |
| LRR_8 | PF13855 | 1055 - 1112 | 3.9e-08 | Leucine rich repeat |
| LRR_14 | PF23598 | 1082 - 1139 | 7.7e-09 | Leucine-rich repeat region |
| C-JID | PF20160 | 1248 - 1388 | 5.9e-09 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 782, 1491, 3879 |
| AarI | CACCTGC | 1 cut(s) | 244 |
| Acc16I | TGCGCA | 2 cut(s) | 330, 1628 |
| AccB1I | GGYRCC | 1 cut(s) | 167 |
| AccI | GTMKAC | 1 cut(s) | 2446 |
| AccII | CGCG | 1 cut(s) | 2849 |
| AccIII | TCCGGA | 1 cut(s) | 1600 |
| AclWI | GGATC | 7 cut(s) | 585, 658, 740, 1698, 3929, 4113, 4169 |
| AcuI | CTGAAG | 2 cut(s) | 791, 2531 |
| AcvI | CACGTG | 1 cut(s) | 4012 |
| AdeI | CACNNNGTG | 1 cut(s) | 312 |
| AfaI | GTAC | 7 cut(s) | 405, 682, 922, 1395, 1511, 3435, 3754 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 71, 460, 3399, 3975, 4118 |
| AflII | CTTAAG | 4 cut(s) | 1670, 2063, 2408, 3167 |
| AflIII | ACRYGT | 1 cut(s) | 4011 |
| AhlI | ACTAGT | 1 cut(s) | 3830 |
| AjnI | CCWGG | 4 cut(s) | 64, 308, 763, 3427 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 717, 749 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1191, 1223 |
| Alw21I | GWGCWC | 3 cut(s) | 483, 3426, 3485 |
| Alw26I | GTCTC | 5 cut(s) | 344, 1227, 1814, 2036, 2064 |
| Alw44I | GTGCAC | 1 cut(s) | 479 |
| AlwI | GGATC | 7 cut(s) | 585, 658, 740, 1698, 3929, 4113, 4169 |
| Ama87I | CYCGRG | 1 cut(s) | 93 |
| Aor13HI | TCCGGA | 1 cut(s) | 1600 |
| AoxI | GGCC | 3 cut(s) | 760, 1660, 4074 |
| ApaLI | GTGCAC | 1 cut(s) | 479 |
| ApeKI | GCWGC | 3 cut(s) | 32, 494, 1193 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3980, 4012 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 867, 1067, 1950 |
| AspLEI | GCGC | 2 cut(s) | 331, 1629 |
| AspS9I | GGNCC | 4 cut(s) | 62, 688, 761, 1660 |
| AsuC2I | CCSGG | 1 cut(s) | 3747 |
| AsuHPI | GGTGA | 4 cut(s) | 140, 514, 3944, 4159 |
| AsuII | TTCGAA | 1 cut(s) | 1455 |
| AvaI | CYCGRG | 1 cut(s) | 93 |
| AvaII | GGWCC | 2 cut(s) | 62, 688 |
| BaeGI | GKGCMC | 1 cut(s) | 483 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 672, 705 |
| BanI | GGYRCC | 1 cut(s) | 167 |
| BanII | GRGCYC | 2 cut(s) | 3426, 3485 |
| BbrPI | CACGTG | 1 cut(s) | 4012 |
| Bbv12I | GWGCWC | 3 cut(s) | 483, 3426, 3485 |
| BbvI | GCAGC | 3 cut(s) | 19, 481, 1205 |
| BccI | CCATC | 6 cut(s) | 165, 358, 403, 1079, 1594, 1681 |
| BceAI | ACGGC | 1 cut(s) | 4109 |
| BciT130I | CCWGG | 4 cut(s) | 66, 310, 765, 3429 |
| BciVI | GTATCC | 1 cut(s) | 1425 |
| BclI | TGATCA | 2 cut(s) | 358, 820 |
| BcnI | CCSGG | 1 cut(s) | 3747 |
| BcoDI | GTCTC | 5 cut(s) | 344, 1227, 1814, 2036, 2064 |
| BcuI | ACTAGT | 1 cut(s) | 3830 |
| BfmI | CTRYAG | 3 cut(s) | 343, 645, 2226 |
| BfrI | CTTAAG | 4 cut(s) | 1670, 2063, 2408, 3167 |
| BfuI | GTATCC | 1 cut(s) | 1425 |
| BglII | AGATCT | 5 cut(s) | 1056, 1726, 1759, 2678, 3722 |
| BisI | GCNGC | 4 cut(s) | 33, 55, 495, 1194 |
| BlpI | GCTNAGC | 1 cut(s) | 3479 |
| BlsI | GCNGC | 4 cut(s) | 34, 56, 496, 1195 |
| BmcAI | AGTACT | 1 cut(s) | 1511 |
| Bme1390I | CCNGG | 5 cut(s) | 66, 310, 765, 3429, 3747 |
| Bme18I | GGWCC | 2 cut(s) | 62, 688 |
| BmeT110I | CYCGRG | 1 cut(s) | 93 |
| BmgT120I | GGNCC | 4 cut(s) | 62, 688, 761, 1660 |
| BmrFI | CCNGG | 5 cut(s) | 66, 310, 765, 3429, 3747 |
| BmrI | ACTGGG | 1 cut(s) | 555 |
| BmsI | GCATC | 8 cut(s) | 308, 421, 1248, 1717, 1860, 3363, 3446, 3571 |
| BmuI | ACTGGG | 1 cut(s) | 555 |
| BoxI | GACNNNNGTC | 1 cut(s) | 390 |
| BpmI | CTGGAG | 2 cut(s) | 161, 3711 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3479 |
| Bpu14I | TTCGAA | 1 cut(s) | 1455 |
| BpuMI | CCSGG | 1 cut(s) | 3747 |
| BsaAI | YACGTR | 1 cut(s) | 4012 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1356, 3460 |
| BsaJI | CCNNGG | 6 cut(s) | 273, 763, 3427, 3428, 3808, 4071 |
| BsaWI | WCCGGW | 1 cut(s) | 1600 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 3408, 3438, 3883, 3913 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 71, 460, 3399, 3975, 4118 |
| Bse1I | ACTGG | 3 cut(s) | 550, 579, 3728 |
| Bse3DI | GCAATG | 1 cut(s) | 2580 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1356, 3460 |
| BseAI | TCCGGA | 1 cut(s) | 1600 |
| BseBI | CCWGG | 4 cut(s) | 66, 310, 765, 3429 |
| BseDI | CCNNGG | 6 cut(s) | 273, 763, 3427, 3428, 3808, 4071 |
| BseGI | GGATG | 6 cut(s) | 325, 1033, 1357, 3461, 3517, 3586 |
| BseJI | GATNNNNATC | 2 cut(s) | 1356, 3460 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 71, 460, 3399, 3975, 4118 |
| BseMI | GCAATG | 1 cut(s) | 2580 |
| BseNI | ACTGG | 3 cut(s) | 550, 579, 3728 |
| BseSI | GKGCMC | 1 cut(s) | 483 |
| BseXI | GCAGC | 3 cut(s) | 19, 481, 1205 |
| BseYI | CCCAGC | 1 cut(s) | 1557 |
| BsgI | GTGCAG | 5 cut(s) | 1212, 1828, 3264, 3477, 3777 |
| Bsh1236I | CGCG | 1 cut(s) | 2849 |
| Bsh1285I | CGRYCG | 1 cut(s) | 255 |
| BshFI | GGCC | 3 cut(s) | 762, 1662, 4076 |
| BshNI | GGYRCC | 1 cut(s) | 167 |
| BsiEI | CGRYCG | 1 cut(s) | 255 |
| BsiHKAI | GWGCWC | 3 cut(s) | 483, 3426, 3485 |
| BsiHKCI | CYCGRG | 1 cut(s) | 93 |
| BsiSI | CCGG | 3 cut(s) | 741, 1601, 3746 |
| BslFI | GGGAC | 1 cut(s) | 433 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 71, 460, 3399, 3975, 4118 |
| BsmAI | GTCTC | 5 cut(s) | 344, 1227, 1814, 2036, 2064 |
| BsmFI | GGGAC | 1 cut(s) | 433 |
| BsmI | GAATGC | 3 cut(s) | 960, 2008, 3866 |
| BsnI | GGCC | 3 cut(s) | 762, 1662, 4076 |
| BsoBI | CYCGRG | 1 cut(s) | 93 |
| Bsp119I | TTCGAA | 1 cut(s) | 1455 |
| Bsp1286I | GDGCHC | 3 cut(s) | 483, 3426, 3485 |
| Bsp13I | TCCGGA | 1 cut(s) | 1600 |
| Bsp1407I | TGTACA | 1 cut(s) | 920 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3479 |
| BspANI | GGCC | 3 cut(s) | 762, 1662, 4076 |
| BspEI | TCCGGA | 1 cut(s) | 1600 |
| BspFNI | CGCG | 1 cut(s) | 2849 |
| BspMAI | CTGCAG | 2 cut(s) | 347, 2230 |
| BspPI | GGATC | 7 cut(s) | 585, 658, 740, 1698, 3929, 4113, 4169 |
| BspQI | GCTCTTC | 3 cut(s) | 873, 978, 1308 |
| BspT104I | TTCGAA | 1 cut(s) | 1455 |
| BspT107I | GGYRCC | 1 cut(s) | 167 |
| BspTI | CTTAAG | 4 cut(s) | 1670, 2063, 2408, 3167 |
| BsrDI | GCAATG | 1 cut(s) | 2580 |
| BsrGI | TGTACA | 1 cut(s) | 920 |
| BsrI | ACTGG | 3 cut(s) | 550, 579, 3728 |
| BssECI | CCNNGG | 6 cut(s) | 273, 763, 3427, 3428, 3808, 4071 |
| BssT1I | CCWWGG | 2 cut(s) | 273, 3808 |
| Bst2UI | CCWGG | 4 cut(s) | 66, 310, 765, 3429 |
| Bst4CI | ACNGT | 7 cut(s) | 167, 355, 467, 508, 1004, 1393, 1634 |
| Bst6I | CTCTTC | 5 cut(s) | 662, 873, 978, 1308, 1536 |
| BstAFI | CTTAAG | 4 cut(s) | 1670, 2063, 2408, 3167 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1267 |
| BstAUI | TGTACA | 1 cut(s) | 920 |
| BstBAI | YACGTR | 1 cut(s) | 4012 |
| BstBI | TTCGAA | 1 cut(s) | 1455 |
| BstEII | GGTNACC | 1 cut(s) | 1565 |
| BstF5I | GGATG | 6 cut(s) | 325, 1033, 1357, 3461, 3517, 3586 |
| BstFNI | CGCG | 1 cut(s) | 2849 |
| BstHHI | GCGC | 2 cut(s) | 331, 1629 |
| BstMAI | GTCTC | 5 cut(s) | 344, 1227, 1814, 2036, 2064 |
| BstMCI | CGRYCG | 1 cut(s) | 255 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 38, 1267, 1624, 3379, 3541, 4062 |
| BstNI | CCWGG | 4 cut(s) | 66, 310, 765, 3429 |
| BstNSI | RCATGY | 2 cut(s) | 1131, 2522 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 390 |
| BstPI | GGTNACC | 1 cut(s) | 1565 |
| BstSCI | CCNGG | 5 cut(s) | 64, 308, 763, 3427, 3745 |
| BstSFI | CTRYAG | 3 cut(s) | 343, 645, 2226 |
| BstSLI | GKGCMC | 1 cut(s) | 483 |
| BstUI | CGCG | 1 cut(s) | 2849 |
| BstV1I | GCAGC | 3 cut(s) | 19, 481, 1205 |
| BstX2I | RGATCY | 8 cut(s) | 745, 1056, 1690, 1726, 1759, 2678, 3722, 4161 |
| BstYI | RGATCY | 8 cut(s) | 745, 1056, 1690, 1726, 1759, 2678, 3722, 4161 |
| BsuI | GTATCC | 1 cut(s) | 1425 |
| BsuRI | GGCC | 3 cut(s) | 762, 1662, 4076 |
| BtsCI | GGATG | 6 cut(s) | 325, 1033, 1357, 3461, 3517, 3586 |
| BtsI | GCAGTG | 1 cut(s) | 1905 |
| BtsIMutI | CAGTG | 2 cut(s) | 1000, 1905 |
| CfoI | GCGC | 2 cut(s) | 331, 1629 |
| Cfr13I | GGNCC | 4 cut(s) | 62, 688, 761, 1660 |
| CsiI | ACCWGGT | 2 cut(s) | 64, 308 |
| Csp6I | GTAC | 7 cut(s) | 404, 681, 921, 1394, 1510, 3434, 3753 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 921, 956, 3910, 3945 |
| CviAII | CATG | 8 cut(s) | 1128, 1445, 1806, 2519, 3452, 3590, 3961, 4040 |
| CviQI | GTAC | 7 cut(s) | 404, 681, 921, 1394, 1510, 3434, 3753 |
| DraI | TTTAAA | 1 cut(s) | 2854 |
| DraIII | CACNNNGTG | 1 cut(s) | 312 |
| Eam1104I | CTCTTC | 5 cut(s) | 662, 873, 978, 1308, 1536 |
| EarI | CTCTTC | 5 cut(s) | 662, 873, 978, 1308, 1536 |
| Ecl136II | GAGCTC | 2 cut(s) | 3424, 3483 |
| Eco130I | CCWWGG | 2 cut(s) | 273, 3808 |
| Eco24I | GRGCYC | 2 cut(s) | 3426, 3485 |
| Eco32I | GATATC | 1 cut(s) | 555 |
| Eco47I | GGWCC | 2 cut(s) | 62, 688 |
| Eco53kI | GAGCTC | 2 cut(s) | 3424, 3483 |
| Eco57I | CTGAAG | 2 cut(s) | 791, 2531 |
| Eco72I | CACGTG | 1 cut(s) | 4012 |
| Eco88I | CYCGRG | 1 cut(s) | 93 |
| Eco91I | GGTNACC | 1 cut(s) | 1565 |
| EcoICRI | GAGCTC | 2 cut(s) | 3424, 3483 |
| EcoO109I | RGGNCCY | 1 cut(s) | 688 |
| EcoO65I | GGTNACC | 1 cut(s) | 1565 |
| EcoRI | GAATTC | 1 cut(s) | 2815 |
| EcoRII | CCWGG | 4 cut(s) | 64, 308, 763, 3427 |
| EcoRV | GATATC | 1 cut(s) | 555 |
| EcoT14I | CCWWGG | 2 cut(s) | 273, 3808 |
| EcoT22I | ATGCAT | 3 cut(s) | 301, 436, 1263 |
| EcoT38I | GRGCYC | 2 cut(s) | 3426, 3485 |
| ErhI | CCWWGG | 2 cut(s) | 273, 3808 |
| FaeI | CATG | 8 cut(s) | 1131, 1448, 1809, 2522, 3455, 3593, 3964, 4043 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1515, 1547, 2710, 2742, 3531, 3563 |
| FaqI | GGGAC | 1 cut(s) | 433 |
| FatI | CATG | 8 cut(s) | 1127, 1444, 1805, 2518, 3451, 3589, 3960, 4039 |
| FauI | CCCGC | 1 cut(s) | 146 |
| FbaI | TGATCA | 2 cut(s) | 358, 820 |
| FblI | GTMKAC | 1 cut(s) | 2446 |
| Fnu4HI | GCNGC | 4 cut(s) | 33, 55, 495, 1194 |
| FokI | GGATG | 6 cut(s) | 332, 1040, 1364, 3468, 3524, 3593 |
| FriOI | GRGCYC | 2 cut(s) | 3426, 3485 |
| Fsp4HI | GCNGC | 4 cut(s) | 33, 55, 495, 1194 |
| FspI | TGCGCA | 2 cut(s) | 330, 1628 |
| GlaI | GCGC | 2 cut(s) | 330, 1628 |
| GluI | GCNGC | 4 cut(s) | 33, 55, 495, 1194 |
| GsaI | CCCAGC | 1 cut(s) | 1561 |
| GsuI | CTGGAG | 2 cut(s) | 161, 3711 |
| HaeIII | GGCC | 3 cut(s) | 762, 1662, 4076 |
| HapII | CCGG | 3 cut(s) | 741, 1601, 3746 |
| HhaI | GCGC | 2 cut(s) | 331, 1629 |
| Hin1II | CATG | 8 cut(s) | 1131, 1448, 1809, 2522, 3455, 3593, 3964, 4043 |
| Hin6I | GCGC | 2 cut(s) | 329, 1627 |
| HinP1I | GCGC | 2 cut(s) | 329, 1627 |
| HincII | GTYRAC | 1 cut(s) | 3390 |
| HindII | GTYRAC | 1 cut(s) | 3390 |
| HindIII | AAGCTT | 4 cut(s) | 1817, 2800, 2857, 3363 |
| HpaI | GTTAAC | 1 cut(s) | 3390 |
| HpaII | CCGG | 3 cut(s) | 741, 1601, 3746 |
| HphI | GGTGA | 4 cut(s) | 140, 514, 3944, 4159 |
| Hpy166II | GTNNAC | 8 cut(s) | 62, 85, 481, 572, 1153, 1297, 2447, 3390 |
| Hpy8I | GTNNAC | 8 cut(s) | 62, 85, 481, 572, 1153, 1297, 2447, 3390 |
| HpyAV | CCTTC | 9 cut(s) | 99, 251, 679, 1007, 1099, 1803, 1935, 2366, 2736 |
| HpyCH4III | ACNGT | 7 cut(s) | 167, 355, 467, 508, 1004, 1393, 1634 |
| HpyCH4IV | ACGT | 4 cut(s) | 10, 1485, 3436, 4011 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 38, 1267, 1624, 3379, 3541, 4062 |
| HpySE526I | ACGT | 4 cut(s) | 10, 1485, 3436, 4011 |
| Hsp92II | CATG | 8 cut(s) | 1131, 1448, 1809, 2522, 3455, 3593, 3964, 4043 |
| HspAI | GCGC | 2 cut(s) | 329, 1627 |
| Kpn2I | TCCGGA | 1 cut(s) | 1600 |
| Ksp22I | TGATCA | 2 cut(s) | 358, 820 |
| KspAI | GTTAAC | 1 cut(s) | 3390 |
| LguI | GCTCTTC | 3 cut(s) | 873, 978, 1308 |
| LmnI | GCTCC | 5 cut(s) | 1963, 3402, 3429, 4121, 4183 |
| Lsp1109I | GCAGC | 3 cut(s) | 19, 481, 1205 |
| LweI | GCATC | 8 cut(s) | 308, 421, 1248, 1717, 1860, 3363, 3446, 3571 |
| MabI | ACCWGGT | 2 cut(s) | 64, 308 |
| MaeII | ACGT | 4 cut(s) | 10, 1485, 3436, 4011 |
| MaeIII | GTNAC | 7 cut(s) | 502, 1502, 1565, 1823, 2117, 4066, 4147 |
| MfeI | CAATTG | 9 cut(s) | 1290, 2367, 2436, 2712, 2781, 2919, 3126, 3195, 3394 |
| MflI | RGATCY | 8 cut(s) | 745, 1056, 1690, 1726, 1759, 2678, 3722, 4161 |
| MhlI | GDGCHC | 3 cut(s) | 483, 3426, 3485 |
| MlyI | GAGTC | 3 cut(s) | 921, 2038, 3907 |
| MmeI | TCCRAC | 1 cut(s) | 3865 |
| Mph1103I | ATGCAT | 3 cut(s) | 301, 436, 1263 |
| MroI | TCCGGA | 1 cut(s) | 1600 |
| MroXI | GAANNNNTTC | 3 cut(s) | 867, 1067, 1950 |
| MslI | CAYNNNNRTG | 2 cut(s) | 3454, 3569 |
| MspA1I | CMGCKG | 1 cut(s) | 2987 |
| MspCI | CTTAAG | 4 cut(s) | 1670, 2063, 2408, 3167 |
| MspI | CCGG | 3 cut(s) | 741, 1601, 3746 |
| MspR9I | CCNGG | 5 cut(s) | 66, 310, 765, 3429, 3747 |
| MunI | CAATTG | 9 cut(s) | 1290, 2367, 2436, 2712, 2781, 2919, 3126, 3195, 3394 |
| Mva1269I | GAATGC | 3 cut(s) | 960, 2008, 3866 |
| MvaI | CCWGG | 4 cut(s) | 66, 310, 765, 3429 |
| MvnI | CGCG | 1 cut(s) | 2849 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 38, 1267, 1624, 3379, 3541, 4062 |
| NciI | CCSGG | 1 cut(s) | 3747 |
| NlaIII | CATG | 8 cut(s) | 1131, 1448, 1809, 2522, 3455, 3593, 3964, 4043 |
| NmeAIII | GCCGAG | 1 cut(s) | 3349 |
| NmuCI | GTSAC | 2 cut(s) | 502, 4147 |
| NsbI | TGCGCA | 2 cut(s) | 330, 1628 |
| NsiI | ATGCAT | 3 cut(s) | 301, 436, 1263 |
| NspI | RCATGY | 2 cut(s) | 1131, 2522 |
| NspV | TTCGAA | 1 cut(s) | 1455 |
| PaeR7I | CTCGAG | 1 cut(s) | 93 |
| PaqCI | CACCTGC | 1 cut(s) | 244 |
| PasI | CCCWGGG | 1 cut(s) | 3428 |
| PciSI | GCTCTTC | 3 cut(s) | 873, 978, 1308 |
| PctI | GAATGC | 3 cut(s) | 960, 2008, 3866 |
| PdmI | GAANNNNTTC | 3 cut(s) | 867, 1067, 1950 |
| PfoI | TCCNGGA | 1 cut(s) | 3745 |
| PkrI | GCNGC | 4 cut(s) | 34, 56, 496, 1195 |
| Ple19I | CGATCG | 1 cut(s) | 255 |
| PleI | GAGTC | 3 cut(s) | 920, 2037, 3906 |
| PmaCI | CACGTG | 1 cut(s) | 4012 |
| PmlI | CACGTG | 1 cut(s) | 4012 |
| PpsI | GAGTC | 3 cut(s) | 920, 2037, 3906 |
| Ppu21I | YACGTR | 1 cut(s) | 4012 |
| PpuMI | RGGWCCY | 1 cut(s) | 688 |
| PshAI | GACNNNNGTC | 1 cut(s) | 390 |
| PsiI | TTATAA | 3 cut(s) | 782, 1491, 3879 |
| Psp124BI | GAGCTC | 2 cut(s) | 3426, 3485 |
| Psp5II | RGGWCCY | 1 cut(s) | 688 |
| Psp6I | CCWGG | 4 cut(s) | 64, 308, 763, 3427 |
| PspCI | CACGTG | 1 cut(s) | 4012 |
| PspEI | GGTNACC | 1 cut(s) | 1565 |
| PspFI | CCCAGC | 1 cut(s) | 1557 |
| PspGI | CCWGG | 4 cut(s) | 64, 308, 763, 3427 |
| PspPI | GGNCC | 4 cut(s) | 62, 688, 761, 1660 |
| PspPPI | RGGWCCY | 1 cut(s) | 688 |
| PstI | CTGCAG | 2 cut(s) | 347, 2230 |
| PsuI | RGATCY | 8 cut(s) | 745, 1056, 1690, 1726, 1759, 2678, 3722, 4161 |
| PvuI | CGATCG | 1 cut(s) | 255 |
| RsaI | GTAC | 7 cut(s) | 405, 682, 922, 1395, 1511, 3435, 3754 |
| RsaNI | GTAC | 7 cut(s) | 404, 681, 921, 1394, 1510, 3434, 3753 |
| RseI | CAYNNNNRTG | 2 cut(s) | 3454, 3569 |
| SacI | GAGCTC | 2 cut(s) | 3426, 3485 |
| SapI | GCTCTTC | 3 cut(s) | 873, 978, 1308 |
| SatI | GCNGC | 4 cut(s) | 33, 55, 495, 1194 |
| Sau96I | GGNCC | 4 cut(s) | 62, 688, 761, 1660 |
| ScaI | AGTACT | 1 cut(s) | 1511 |
| SchI | GAGTC | 3 cut(s) | 921, 2038, 3907 |
| ScrFI | CCNGG | 5 cut(s) | 66, 310, 765, 3429, 3747 |
| SduI | GDGCHC | 3 cut(s) | 483, 3426, 3485 |
| SexAI | ACCWGGT | 2 cut(s) | 64, 308 |
| SfaNI | GCATC | 8 cut(s) | 308, 421, 1248, 1717, 1860, 3363, 3446, 3571 |
| SfcI | CTRYAG | 3 cut(s) | 343, 645, 2226 |
| Sfr274I | CTCGAG | 1 cut(s) | 93 |
| SfuI | TTCGAA | 1 cut(s) | 1455 |
| SinI | GGWCC | 2 cut(s) | 62, 688 |
| SlaI | CTCGAG | 1 cut(s) | 93 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 3454, 3569 |
| SpeI | ACTAGT | 1 cut(s) | 3830 |
| SspI | AATATT | 3 cut(s) | 631, 1986, 4141 |
| SstI | GAGCTC | 2 cut(s) | 3426, 3485 |
| StyD4I | CCNGG | 5 cut(s) | 64, 308, 763, 3427, 3745 |
| StyI | CCWWGG | 2 cut(s) | 273, 3808 |
| TaaI | ACNGT | 7 cut(s) | 167, 355, 467, 508, 1004, 1393, 1634 |
| TaiI | ACGT | 4 cut(s) | 13, 1488, 3439, 4014 |
| TaqI | TCGA | 9 cut(s) | 94, 255, 471, 528, 915, 1203, 1455, 1812, 3870 |
| TatI | WGTACW | 3 cut(s) | 920, 1509, 3752 |
| TauI | GCSGC | 1 cut(s) | 57 |
| TscAI | CASTG | 2 cut(s) | 1007, 1912 |
| TseFI | GTSAC | 2 cut(s) | 502, 4147 |
| TseI | GCWGC | 3 cut(s) | 32, 494, 1193 |
| Tsp45I | GTSAC | 2 cut(s) | 502, 4147 |
| TspDTI | ATGAA | 7 cut(s) | 336, 876, 1044, 1917, 3528, 3671, 3723 |
| TspGWI | ACGGA | 3 cut(s) | 443, 954, 4134 |
| TspRI | CASTG | 2 cut(s) | 1007, 1912 |
| Vha464I | CTTAAG | 4 cut(s) | 1670, 2063, 2408, 3167 |
| VneI | GTGCAC | 1 cut(s) | 479 |
| VpaK11BI | GGWCC | 2 cut(s) | 62, 688 |
| XbaI | TCTAGA | 2 cut(s) | 244, 908 |
| XceI | RCATGY | 2 cut(s) | 1131, 2522 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 313, 3435 |
| XhoI | CTCGAG | 1 cut(s) | 93 |
| XmiI | GTMKAC | 1 cut(s) | 2446 |
| XmnI | GAANNNNTTC | 3 cut(s) | 867, 1067, 1950 |
| ZrmI | AGTACT | 1 cut(s) | 1511 |
| Zsp2I | ATGCAT | 3 cut(s) | 301, 436, 1263 |