TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 24 - 97 | 2.1e-10 | TIR domain |
| NB-ARC | PF00931 | 114 - 269 | 5.3e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 337 - 405 | 5.3e-21 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 513 - 532 | 2.4e-06 | Leucine Rich Repeat |
| LRR_13 | PF23286 | 581 - 662 | 2.3e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1050, 1398, 2237 |
| AccI | GTMKAC | 1 cut(s) | 2275 |
| AccII | CGCG | 2 cut(s) | 306, 1212 |
| AccIII | TCCGGA | 1 cut(s) | 1654 |
| AciI | CCGC | 6 cut(s) | 65, 304, 589, 1095, 1112, 1210 |
| AclI | AACGTT | 1 cut(s) | 112 |
| AclWI | GGATC | 3 cut(s) | 45, 623, 1665 |
| AcsI | RAATTY | 8 cut(s) | 431, 969, 1392, 1412, 1523, 1688, 1956, 2186 |
| AcuI | CTGAAG | 2 cut(s) | 761, 1608 |
| AfaI | GTAC | 5 cut(s) | 829, 1297, 1702, 1901, 2055 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 148, 310, 598 |
| AflII | CTTAAG | 2 cut(s) | 881, 1913 |
| AflIII | ACRYGT | 2 cut(s) | 59, 1134 |
| AjnI | CCWGG | 4 cut(s) | 285, 670, 1941, 2006 |
| Alw21I | GWGCWC | 2 cut(s) | 141, 661 |
| Alw26I | GTCTC | 3 cut(s) | 1143, 1464, 2155 |
| AlwI | GGATC | 3 cut(s) | 45, 623, 1665 |
| Ama87I | CYCGRG | 1 cut(s) | 2156 |
| Aor13HI | TCCGGA | 1 cut(s) | 1654 |
| AoxI | GGCC | 2 cut(s) | 283, 1450 |
| ApoI | RAATTY | 8 cut(s) | 431, 969, 1392, 1412, 1523, 1688, 1956, 2186 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 774, 954 |
| AspS9I | GGNCC | 4 cut(s) | 283, 601, 668, 1866 |
| AsuHPI | GGTGA | 1 cut(s) | 1521 |
| AvaI | CYCGRG | 1 cut(s) | 2156 |
| AvaII | GGWCC | 3 cut(s) | 601, 668, 1866 |
| AxyI | CCTNAGG | 1 cut(s) | 1218 |
| BaeGI | GKGCMC | 2 cut(s) | 551, 815 |
| BanII | GRGCYC | 1 cut(s) | 2085 |
| BauI | CACGAG | 1 cut(s) | 402 |
| BbsI | GAAGAC | 1 cut(s) | 1596 |
| Bbv12I | GWGCWC | 2 cut(s) | 141, 661 |
| BbvCI | CCTCAGC | 1 cut(s) | 1254 |
| BccI | CCATC | 6 cut(s) | 62, 426, 857, 992, 1487, 1525 |
| BceAI | ACGGC | 1 cut(s) | 576 |
| BciT130I | CCWGG | 4 cut(s) | 287, 672, 1943, 2008 |
| BciVI | GTATCC | 1 cut(s) | 1081 |
| BcoDI | GTCTC | 3 cut(s) | 1143, 1464, 2155 |
| BfaI | CTAG | 3 cut(s) | 344, 696, 2287 |
| BfmI | CTRYAG | 1 cut(s) | 357 |
| BfrI | CTTAAG | 2 cut(s) | 881, 1913 |
| BfuI | GTATCC | 1 cut(s) | 1081 |
| BglII | AGATCT | 1 cut(s) | 1123 |
| Bme1390I | CCNGG | 4 cut(s) | 287, 672, 1943, 2008 |
| Bme18I | GGWCC | 3 cut(s) | 601, 668, 1866 |
| BmeT110I | CYCGRG | 1 cut(s) | 2156 |
| BmgT120I | GGNCC | 4 cut(s) | 283, 601, 668, 1866 |
| BmiI | GGNNCC | 6 cut(s) | 587, 895, 930, 1291, 1868, 2214 |
| BmrFI | CCNGG | 4 cut(s) | 287, 672, 1943, 2008 |
| BmrI | ACTGGG | 2 cut(s) | 1498, 2043 |
| BmsI | GCATC | 7 cut(s) | 9, 142, 1099, 1161, 1418, 1459, 1865 |
| BmuI | ACTGGG | 2 cut(s) | 1498, 2043 |
| BpiI | GAAGAC | 1 cut(s) | 1596 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2152, 2184 |
| BpmI | CTGGAG | 2 cut(s) | 741, 2249 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1254 |
| BpuEI | CTTGAG | 2 cut(s) | 1052, 1759 |
| BsaAI | YACGTR | 2 cut(s) | 47, 1829 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1497 |
| BsaI | GGTCTC | 1 cut(s) | 1464 |
| BsaJI | CCNNGG | 1 cut(s) | 2006 |
| BsaWI | WCCGGW | 2 cut(s) | 1531, 1654 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 570, 600 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 148, 310, 598 |
| Bse1I | ACTGG | 8 cut(s) | 270, 724, 951, 1293, 1493, 1802, 2038, 2103 |
| Bse21I | CCTNAGG | 1 cut(s) | 1218 |
| Bse3DI | GCAATG | 1 cut(s) | 1511 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1497 |
| BseAI | TCCGGA | 1 cut(s) | 1654 |
| BseBI | CCWGG | 4 cut(s) | 287, 672, 1943, 2008 |
| BseDI | CCNNGG | 1 cut(s) | 2006 |
| BseGI | GGATG | 7 cut(s) | 24, 157, 266, 300, 982, 1176, 1498 |
| BseJI | GATNNNNATC | 1 cut(s) | 1497 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 148, 310, 598 |
| BseMI | GCAATG | 1 cut(s) | 1511 |
| BseMII | CTCAG | 5 cut(s) | 198, 674, 1245, 1410, 1679 |
| BseNI | ACTGG | 8 cut(s) | 270, 724, 951, 1293, 1493, 1802, 2038, 2103 |
| BseRI | GAGGAG | 1 cut(s) | 738 |
| BseSI | GKGCMC | 2 cut(s) | 551, 815 |
| BsgI | GTGCAG | 1 cut(s) | 1374 |
| Bsh1236I | CGCG | 2 cut(s) | 306, 1212 |
| BshFI | GGCC | 2 cut(s) | 285, 1452 |
| BsiHKAI | GWGCWC | 2 cut(s) | 141, 661 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2156 |
| BsiSI | CCGG | 2 cut(s) | 1532, 1655 |
| BslFI | GGGAC | 3 cut(s) | 1703, 1852, 2050 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 148, 310, 598 |
| BsmAI | GTCTC | 3 cut(s) | 1143, 1464, 2155 |
| BsmFI | GGGAC | 3 cut(s) | 1703, 1852, 2050 |
| BsmI | GAATGC | 1 cut(s) | 867 |
| BsnI | GGCC | 2 cut(s) | 285, 1452 |
| Bso31I | GGTCTC | 1 cut(s) | 1464 |
| BsoBI | CYCGRG | 1 cut(s) | 2156 |
| Bsp1286I | GDGCHC | 5 cut(s) | 141, 551, 661, 815, 2085 |
| Bsp13I | TCCGGA | 1 cut(s) | 1654 |
| Bsp1407I | TGTACA | 2 cut(s) | 827, 1700 |
| Bsp143I | GATC | 7 cut(s) | 50, 263, 563, 628, 643, 1123, 1657 |
| BspACI | CCGC | 6 cut(s) | 65, 304, 589, 1095, 1112, 1210 |
| BspANI | GGCC | 2 cut(s) | 285, 1452 |
| BspCNI | CTCAG | 5 cut(s) | 199, 673, 1246, 1411, 1678 |
| BspEI | TCCGGA | 1 cut(s) | 1654 |
| BspFNI | CGCG | 2 cut(s) | 306, 1212 |
| BspLI | GGNNCC | 6 cut(s) | 587, 895, 930, 1291, 1868, 2214 |
| BspPI | GGATC | 3 cut(s) | 45, 623, 1665 |
| BspQI | GCTCTTC | 1 cut(s) | 2255 |
| BspTI | CTTAAG | 2 cut(s) | 881, 1913 |
| BspTNI | GGTCTC | 1 cut(s) | 1464 |
| BsrDI | GCAATG | 1 cut(s) | 1511 |
| BsrGI | TGTACA | 2 cut(s) | 827, 1700 |
| BsrI | ACTGG | 8 cut(s) | 270, 724, 951, 1293, 1493, 1802, 2038, 2103 |
| BssECI | CCNNGG | 1 cut(s) | 2006 |
| BssMI | GATC | 7 cut(s) | 50, 263, 563, 628, 643, 1123, 1657 |
| BssSI | CACGAG | 1 cut(s) | 402 |
| Bst2BI | CACGAG | 1 cut(s) | 402 |
| Bst2UI | CCWGG | 4 cut(s) | 287, 672, 1943, 2008 |
| Bst4CI | ACNGT | 2 cut(s) | 1700, 1904 |
| Bst6I | CTCTTC | 3 cut(s) | 1467, 1839, 2255 |
| BstAFI | CTTAAG | 2 cut(s) | 881, 1913 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1437, 1935 |
| BstAUI | TGTACA | 2 cut(s) | 827, 1700 |
| BstBAI | YACGTR | 2 cut(s) | 47, 1829 |
| BstC8I | GCNNGC | 1 cut(s) | 1854 |
| BstF5I | GGATG | 7 cut(s) | 24, 157, 266, 300, 982, 1176, 1498 |
| BstFNI | CGCG | 2 cut(s) | 306, 1212 |
| BstKTI | GATC | 7 cut(s) | 53, 266, 566, 631, 646, 1126, 1660 |
| BstMAI | GTCTC | 3 cut(s) | 1143, 1464, 2155 |
| BstMBI | GATC | 7 cut(s) | 50, 263, 563, 628, 643, 1123, 1657 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 95, 1437, 1555, 1935, 2221 |
| BstNI | CCWGG | 4 cut(s) | 287, 672, 1943, 2008 |
| BstNSI | RCATGY | 5 cut(s) | 63, 1044, 1138, 1346, 1372 |
| BstSCI | CCNGG | 4 cut(s) | 285, 670, 1941, 2006 |
| BstSFI | CTRYAG | 1 cut(s) | 357 |
| BstSLI | GKGCMC | 2 cut(s) | 551, 815 |
| BstUI | CGCG | 2 cut(s) | 306, 1212 |
| BstV2I | GAAGAC | 1 cut(s) | 1596 |
| BstX2I | RGATCY | 3 cut(s) | 50, 1123, 1657 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1601, 1961 |
| BstYI | RGATCY | 3 cut(s) | 50, 1123, 1657 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1218 |
| BsuI | GTATCC | 1 cut(s) | 1081 |
| BsuRI | GGCC | 2 cut(s) | 285, 1452 |
| BtgZI | GCGATG | 1 cut(s) | 1441 |
| BtsCI | GGATG | 7 cut(s) | 24, 157, 266, 300, 982, 1176, 1498 |
| BtsI | GCAGTG | 1 cut(s) | 904 |
| BtsIMutI | CAGTG | 4 cut(s) | 277, 717, 904, 1809 |
| Cac8I | GCNNGC | 1 cut(s) | 1854 |
| Cfr13I | GGNCC | 4 cut(s) | 283, 601, 668, 1866 |
| CseI | GACGC | 2 cut(s) | 1242, 2131 |
| Csp6I | GTAC | 5 cut(s) | 828, 1296, 1701, 1900, 2054 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 828, 863 |
| CviAII | CATG | 9 cut(s) | 60, 127, 788, 1041, 1135, 1175, 1343, 1369, 2271 |
| CviQI | GTAC | 5 cut(s) | 828, 1296, 1701, 1900, 2054 |
| DpnI | GATC | 7 cut(s) | 52, 265, 565, 630, 645, 1125, 1659 |
| DpnII | GATC | 7 cut(s) | 50, 263, 563, 628, 643, 1123, 1657 |
| Eam1104I | CTCTTC | 3 cut(s) | 1467, 1839, 2255 |
| EarI | CTCTTC | 3 cut(s) | 1467, 1839, 2255 |
| EciI | GGCGGA | 1 cut(s) | 578 |
| Eco147I | AGGCCT | 1 cut(s) | 1452 |
| Eco24I | GRGCYC | 1 cut(s) | 2085 |
| Eco31I | GGTCTC | 1 cut(s) | 1464 |
| Eco32I | GATATC | 2 cut(s) | 1261, 1499 |
| Eco47I | GGWCC | 3 cut(s) | 601, 668, 1866 |
| Eco57I | CTGAAG | 2 cut(s) | 761, 1608 |
| Eco81I | CCTNAGG | 1 cut(s) | 1218 |
| Eco88I | CYCGRG | 1 cut(s) | 2156 |
| EcoO109I | RGGNCCY | 2 cut(s) | 283, 601 |
| EcoRI | GAATTC | 1 cut(s) | 969 |
| EcoRII | CCWGG | 4 cut(s) | 285, 670, 1941, 2006 |
| EcoRV | GATATC | 2 cut(s) | 1261, 1499 |
| EcoT22I | ATGCAT | 2 cut(s) | 1176, 1374 |
| EcoT38I | GRGCYC | 1 cut(s) | 2085 |
| FaeI | CATG | 9 cut(s) | 63, 130, 791, 1044, 1138, 1178, 1346, 1372, 2274 |
| FaqI | GGGAC | 3 cut(s) | 1703, 1852, 2050 |
| FatI | CATG | 9 cut(s) | 59, 126, 787, 1040, 1134, 1174, 1342, 1368, 2270 |
| FauI | CCCGC | 1 cut(s) | 1105 |
| FauNDI | CATATG | 3 cut(s) | 365, 702, 1554 |
| FblI | GTMKAC | 1 cut(s) | 2275 |
| FokI | GGATG | 7 cut(s) | 31, 164, 253, 307, 989, 1183, 1505 |
| FriOI | GRGCYC | 1 cut(s) | 2085 |
| FspBI | CTAG | 3 cut(s) | 344, 696, 2287 |
| GsuI | CTGGAG | 2 cut(s) | 741, 2249 |
| HaeIII | GGCC | 2 cut(s) | 285, 1452 |
| HapII | CCGG | 2 cut(s) | 1532, 1655 |
| HgaI | GACGC | 2 cut(s) | 1242, 2131 |
| Hin1II | CATG | 9 cut(s) | 63, 130, 791, 1044, 1138, 1178, 1346, 1372, 2274 |
| HincII | GTYRAC | 3 cut(s) | 638, 2031, 2276 |
| HindII | GTYRAC | 3 cut(s) | 638, 2031, 2276 |
| HindIII | AAGCTT | 3 cut(s) | 438, 1745, 1877 |
| HpaII | CCGG | 2 cut(s) | 1532, 1655 |
| HphI | GGTGA | 1 cut(s) | 1521 |
| Hpy166II | GTNNAC | 4 cut(s) | 638, 2031, 2249, 2276 |
| Hpy8I | GTNNAC | 4 cut(s) | 638, 2031, 2249, 2276 |
| HpyAV | CCTTC | 7 cut(s) | 274, 592, 785, 1369, 1442, 1451, 1608 |
| HpyCH4III | ACNGT | 2 cut(s) | 1700, 1904 |
| HpyCH4IV | ACGT | 3 cut(s) | 46, 112, 1828 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 95, 1437, 1555, 1935, 2221 |
| HpySE526I | ACGT | 3 cut(s) | 46, 112, 1828 |
| Hsp92II | CATG | 9 cut(s) | 63, 130, 791, 1044, 1138, 1178, 1346, 1372, 2274 |
| Kpn2I | TCCGGA | 1 cut(s) | 1654 |
| Kzo9I | GATC | 7 cut(s) | 50, 263, 563, 628, 643, 1123, 1657 |
| LguI | GCTCTTC | 1 cut(s) | 2255 |
| LmnI | GCTCC | 6 cut(s) | 144, 591, 725, 1222, 2212, 2221 |
| LweI | GCATC | 7 cut(s) | 9, 142, 1099, 1161, 1418, 1459, 1865 |
| MaeI | CTAG | 3 cut(s) | 344, 696, 2287 |
| MaeII | ACGT | 3 cut(s) | 46, 112, 1828 |
| MaeIII | GTNAC | 1 cut(s) | 2119 |
| MalI | GATC | 7 cut(s) | 52, 265, 565, 630, 645, 1125, 1659 |
| MboI | GATC | 7 cut(s) | 50, 263, 563, 628, 643, 1123, 1657 |
| MfeI | CAATTG | 3 cut(s) | 1203, 1299, 2043 |
| MflI | RGATCY | 3 cut(s) | 50, 1123, 1657 |
| MhlI | GDGCHC | 5 cut(s) | 141, 551, 661, 815, 2085 |
| MlyI | GAGTC | 3 cut(s) | 218, 332, 1678 |
| MmeI | TCCRAC | 1 cut(s) | 1065 |
| Mph1103I | ATGCAT | 2 cut(s) | 1176, 1374 |
| MroI | TCCGGA | 1 cut(s) | 1654 |
| MroXI | GAANNNNTTC | 2 cut(s) | 774, 954 |
| MslI | CAYNNNNRTG | 2 cut(s) | 792, 823 |
| MspA1I | CMGCKG | 1 cut(s) | 89 |
| MspCI | CTTAAG | 2 cut(s) | 881, 1913 |
| MspI | CCGG | 2 cut(s) | 1532, 1655 |
| MspR9I | CCNGG | 4 cut(s) | 287, 672, 1943, 2008 |
| MunI | CAATTG | 3 cut(s) | 1203, 1299, 2043 |
| Mva1269I | GAATGC | 1 cut(s) | 867 |
| MvaI | CCWGG | 4 cut(s) | 287, 672, 1943, 2008 |
| MvnI | CGCG | 2 cut(s) | 306, 1212 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 95, 1437, 1555, 1935, 2221 |
| NdeI | CATATG | 3 cut(s) | 365, 702, 1554 |
| NdeII | GATC | 7 cut(s) | 50, 263, 563, 628, 643, 1123, 1657 |
| NlaIII | CATG | 9 cut(s) | 63, 130, 791, 1044, 1138, 1178, 1346, 1372, 2274 |
| NlaIV | GGNNCC | 6 cut(s) | 587, 895, 930, 1291, 1868, 2214 |
| NmuCI | GTSAC | 1 cut(s) | 2119 |
| NsiI | ATGCAT | 2 cut(s) | 1176, 1374 |
| NspI | RCATGY | 5 cut(s) | 63, 1044, 1138, 1346, 1372 |
| PaeR7I | CTCGAG | 1 cut(s) | 2156 |
| PceI | AGGCCT | 1 cut(s) | 1452 |
| PciI | ACATGT | 2 cut(s) | 59, 1134 |
| PciSI | GCTCTTC | 1 cut(s) | 2255 |
| PctI | GAATGC | 1 cut(s) | 867 |
| PdmI | GAANNNNTTC | 2 cut(s) | 774, 954 |
| PfeI | GAWTC | 9 cut(s) | 188, 256, 467, 681, 955, 1597, 1759, 1918, 1946 |
| PfoI | TCCNGGA | 1 cut(s) | 670 |
| PleI | GAGTC | 3 cut(s) | 217, 332, 1677 |
| PpsI | GAGTC | 3 cut(s) | 217, 332, 1677 |
| Ppu21I | YACGTR | 2 cut(s) | 47, 1829 |
| PpuMI | RGGWCCY | 1 cut(s) | 601 |
| PscI | ACATGT | 2 cut(s) | 59, 1134 |
| PsiI | TTATAA | 3 cut(s) | 1050, 1398, 2237 |
| Psp1406I | AACGTT | 1 cut(s) | 112 |
| Psp5II | RGGWCCY | 1 cut(s) | 601 |
| Psp6I | CCWGG | 4 cut(s) | 285, 670, 1941, 2006 |
| PspGI | CCWGG | 4 cut(s) | 285, 670, 1941, 2006 |
| PspN4I | GGNNCC | 6 cut(s) | 587, 895, 930, 1291, 1868, 2214 |
| PspPI | GGNCC | 4 cut(s) | 283, 601, 668, 1866 |
| PspPPI | RGGWCCY | 1 cut(s) | 601 |
| PsuI | RGATCY | 3 cut(s) | 50, 1123, 1657 |
| PvuII | CAGCTG | 1 cut(s) | 89 |
| RsaI | GTAC | 5 cut(s) | 829, 1297, 1702, 1901, 2055 |
| RsaNI | GTAC | 5 cut(s) | 828, 1296, 1701, 1900, 2054 |
| RseI | CAYNNNNRTG | 2 cut(s) | 792, 823 |
| SalI | GTCGAC | 1 cut(s) | 2274 |
| SapI | GCTCTTC | 1 cut(s) | 2255 |
| Sau3AI | GATC | 7 cut(s) | 50, 263, 563, 628, 643, 1123, 1657 |
| Sau96I | GGNCC | 4 cut(s) | 283, 601, 668, 1866 |
| SchI | GAGTC | 3 cut(s) | 218, 332, 1678 |
| ScrFI | CCNGG | 4 cut(s) | 287, 672, 1943, 2008 |
| SduI | GDGCHC | 5 cut(s) | 141, 551, 661, 815, 2085 |
| SfaNI | GCATC | 7 cut(s) | 9, 142, 1099, 1161, 1418, 1459, 1865 |
| SfcI | CTRYAG | 1 cut(s) | 357 |
| Sfr274I | CTCGAG | 1 cut(s) | 2156 |
| SinI | GGWCC | 3 cut(s) | 601, 668, 1866 |
| SlaI | CTCGAG | 1 cut(s) | 2156 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 792, 823 |
| SmlI | CTYRAG | 5 cut(s) | 881, 1031, 1774, 1913, 2156 |
| SmoI | CTYRAG | 5 cut(s) | 881, 1031, 1774, 1913, 2156 |
| SseBI | AGGCCT | 1 cut(s) | 1452 |
| SsiI | CCGC | 6 cut(s) | 65, 304, 589, 1095, 1112, 1210 |
| SspI | AATATT | 2 cut(s) | 199, 2105 |
| SspMI | CTAG | 3 cut(s) | 344, 696, 2287 |
| StuI | AGGCCT | 1 cut(s) | 1452 |
| StyD4I | CCNGG | 4 cut(s) | 285, 670, 1941, 2006 |
| TaaI | ACNGT | 2 cut(s) | 1700, 1904 |
| TaiI | ACGT | 3 cut(s) | 49, 115, 1831 |
| TaqI | TCGA | 2 cut(s) | 2157, 2275 |
| TatI | WGTACW | 4 cut(s) | 827, 1295, 1700, 1899 |
| TauI | GCSGC | 2 cut(s) | 306, 1098 |
| TfiI | GAWTC | 9 cut(s) | 188, 256, 467, 681, 955, 1597, 1759, 1918, 1946 |
| TscAI | CASTG | 4 cut(s) | 277, 724, 911, 1809 |
| TseFI | GTSAC | 1 cut(s) | 2119 |
| Tsp45I | GTSAC | 1 cut(s) | 2119 |
| TspDTI | ATGAA | 7 cut(s) | 311, 611, 759, 776, 777, 783, 1425 |
| TspGWI | ACGGA | 2 cut(s) | 595, 861 |
| TspRI | CASTG | 4 cut(s) | 277, 724, 911, 1809 |
| Vha464I | CTTAAG | 2 cut(s) | 881, 1913 |
| VpaK11BI | GGWCC | 3 cut(s) | 601, 668, 1866 |
| XapI | RAATTY | 8 cut(s) | 431, 969, 1392, 1412, 1523, 1688, 1956, 2186 |
| XbaI | TCTAGA | 1 cut(s) | 343 |
| XceI | RCATGY | 5 cut(s) | 63, 1044, 1138, 1346, 1372 |
| XhoI | CTCGAG | 1 cut(s) | 2156 |
| XmiI | GTMKAC | 1 cut(s) | 2275 |
| XmnI | GAANNNNTTC | 2 cut(s) | 774, 954 |
| XspI | CTAG | 3 cut(s) | 344, 696, 2287 |
| Zsp2I | ATGCAT | 2 cut(s) | 1176, 1374 |