Disease resistance protein (TIR-NBS-LRR class)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 16 - 194 | 9.8e-54 | TIR domain |
| TIR_2 | PF13676 | 19 - 114 | 1.4e-14 | TIR domain |
| NB-ARC | PF00931 | 215 - 364 | 9.4e-12 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 447 - 516 | 1.5e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 727 - 816 | 1.3e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 846 - 939 | 8.6e-08 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 872 - 970 | 4.7e-13 | Leucine-rich repeat region |
| C-JID | PF20160 | 1068 - 1191 | 5e-15 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1007 |
| AarI | CACCTGC | 1 cut(s) | 1165 |
| AatII | GACGTC | 1 cut(s) | 1602 |
| Acc16I | TGCGCA | 1 cut(s) | 2083 |
| Acc36I | ACCTGC | 1 cut(s) | 1165 |
| Acc65I | GGTACC | 1 cut(s) | 779 |
| AccB1I | GGYRCC | 2 cut(s) | 779, 881 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1525 |
| AccBSI | CCGCTC | 2 cut(s) | 2421, 2929 |
| AccI | GTMKAC | 1 cut(s) | 2052 |
| AccIII | TCCGGA | 2 cut(s) | 1438, 2032 |
| AciI | CCGC | 8 cut(s) | 183, 601, 904, 1088, 2421, 2600, 2929, 3434 |
| AclI | AACGTT | 3 cut(s) | 772, 1286, 3172 |
| AclWI | GGATC | 8 cut(s) | 1510, 1679, 1692, 1934, 2286, 2480, 3048, 3256 |
| AcoI | YGGCCR | 2 cut(s) | 429, 1953 |
| AcsI | RAATTY | 9 cut(s) | 494, 612, 853, 1215, 2209, 2264, 2799, 3216, 3596 |
| AcuI | CTGAAG | 3 cut(s) | 615, 1100, 1289 |
| AcvI | CACGTG | 1 cut(s) | 1143 |
| AcyI | GRCGYC | 1 cut(s) | 1599 |
| AdeI | CACNNNGTG | 2 cut(s) | 258, 1513 |
| AfaI | GTAC | 8 cut(s) | 781, 910, 1044, 1150, 1316, 1555, 1611, 1641 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1445, 1525 |
| AflII | CTTAAG | 1 cut(s) | 1714 |
| AflIII | ACRYGT | 2 cut(s) | 1142, 3450 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3526 |
| AjiI | CACGTC | 2 cut(s) | 937, 3451 |
| AjnI | CCWGG | 6 cut(s) | 75, 988, 1542, 1564, 1868, 1950 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 602, 634, 966, 998 |
| AleI | CACNNNNGTG | 3 cut(s) | 1590, 3724, 3806 |
| Alw21I | GWGCWC | 1 cut(s) | 2952 |
| AlwI | GGATC | 8 cut(s) | 1510, 1679, 1692, 1934, 2286, 2480, 3048, 3256 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1264, 3020 |
| Ama87I | CYCGRG | 1 cut(s) | 1014 |
| Aor13HI | TCCGGA | 2 cut(s) | 1438, 2032 |
| AoxI | GGCC | 7 cut(s) | 73, 429, 463, 985, 1900, 1953, 3574 |
| ApeKI | GCWGC | 8 cut(s) | 113, 377, 458, 1190, 1421, 2079, 2656, 2709 |
| ApoI | RAATTY | 9 cut(s) | 494, 612, 853, 1215, 2209, 2264, 2799, 3216, 3596 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 3019, 3051, 3696, 3728, 3778, 3810 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 645, 1302, 1358, 2328, 2799 |
| Asp718I | GGTACC | 1 cut(s) | 779 |
| AspA2I | CCTAGG | 1 cut(s) | 2074 |
| AspLEI | GCGC | 2 cut(s) | 354, 2084 |
| AspS9I | GGNCC | 4 cut(s) | 179, 986, 1948, 3063 |
| AsuC2I | CCSGG | 2 cut(s) | 1702, 3207 |
| AsuHPI | GGTGA | 3 cut(s) | 1604, 1690, 3389 |
| AsuII | TTCGAA | 1 cut(s) | 3293 |
| AvaI | CYCGRG | 1 cut(s) | 1014 |
| AvaII | GGWCC | 3 cut(s) | 179, 1948, 3063 |
| AvrII | CCTAGG | 1 cut(s) | 2074 |
| BaeGI | GKGCMC | 1 cut(s) | 2445 |
| BalI | TGGCCA | 1 cut(s) | 431 |
| BamHI | GGATCC | 1 cut(s) | 1684 |
| BanI | GGYRCC | 2 cut(s) | 779, 881 |
| BanII | GRGCYC | 2 cut(s) | 2688, 2901 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 41, 73 |
| BbrPI | CACGTG | 1 cut(s) | 1143 |
| BbsI | GAAGAC | 3 cut(s) | 49, 603, 2951 |
| Bbv12I | GWGCWC | 1 cut(s) | 2952 |
| BbvI | GCAGC | 8 cut(s) | 100, 364, 470, 1177, 1408, 2066, 2643, 2696 |
| BccI | CCATC | 6 cut(s) | 111, 349, 1325, 1439, 1834, 2147 |
| BceAI | ACGGC | 3 cut(s) | 869, 891, 2644 |
| BciT130I | CCWGG | 6 cut(s) | 77, 990, 1544, 1566, 1870, 1952 |
| BciVI | GTATCC | 1 cut(s) | 73 |
| BclI | TGATCA | 1 cut(s) | 222 |
| BcnI | CCSGG | 2 cut(s) | 1702, 3207 |
| BfaI | CTAG | 5 cut(s) | 842, 1763, 2075, 2574, 2963 |
| BfmI | CTRYAG | 6 cut(s) | 289, 660, 876, 1191, 2011, 3021 |
| BfrI | CTTAAG | 1 cut(s) | 1714 |
| BfuAI | ACCTGC | 1 cut(s) | 1165 |
| BfuI | GTATCC | 1 cut(s) | 73 |
| BglII | AGATCT | 2 cut(s) | 1300, 2842 |
| BisI | GCNGC | 9 cut(s) | 114, 378, 459, 1191, 1422, 2080, 2657, 2710, 2930 |
| BlnI | CCTAGG | 1 cut(s) | 2074 |
| BlsI | GCNGC | 9 cut(s) | 115, 379, 460, 1192, 1423, 2081, 2658, 2711, 2931 |
| Bme1390I | CCNGG | 8 cut(s) | 77, 990, 1544, 1566, 1702, 1870, 1952, 3207 |
| Bme18I | GGWCC | 3 cut(s) | 179, 1948, 3063 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3526 |
| BmeT110I | CYCGRG | 1 cut(s) | 1014 |
| BmgBI | CACGTC | 2 cut(s) | 937, 3451 |
| BmgT120I | GGNCC | 4 cut(s) | 179, 986, 1948, 3063 |
| BmiI | GGNNCC | 8 cut(s) | 180, 181, 781, 883, 902, 1686, 2604, 3331 |
| BmrFI | CCNGG | 8 cut(s) | 77, 990, 1544, 1566, 1702, 1870, 1952, 3207 |
| BmrI | ACTGGG | 1 cut(s) | 2478 |
| BmsI | GCATC | 7 cut(s) | 693, 697, 1494, 1695, 1768, 2889, 3115 |
| BmuI | ACTGGG | 1 cut(s) | 2478 |
| BpiI | GAAGAC | 3 cut(s) | 49, 603, 2951 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2753, 2785 |
| BpmI | CTGGAG | 3 cut(s) | 179, 1891, 2639 |
| Bpu14I | TTCGAA | 1 cut(s) | 3293 |
| BpuEI | CTTGAG | 9 cut(s) | 550, 1674, 1865, 2504, 2567, 2672, 2780, 2885, 3017 |
| BpuMI | CCSGG | 2 cut(s) | 1702, 3207 |
| Bsa29I | ATCGAT | 1 cut(s) | 1929 |
| BsaAI | YACGTR | 1 cut(s) | 1143 |
| BsaHI | GRCGYC | 1 cut(s) | 1599 |
| BsaI | GGTCTC | 2 cut(s) | 2322, 2858 |
| BsaJI | CCNNGG | 7 cut(s) | 988, 1868, 1944, 2074, 2384, 3066, 3571 |
| BsaWI | WCCGGW | 4 cut(s) | 362, 1438, 2032, 2590 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 159, 189, 2857, 2887 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1445, 1525 |
| Bse1I | ACTGG | 6 cut(s) | 162, 288, 583, 2473, 2945, 3407 |
| Bse3DI | GCAATG | 1 cut(s) | 2828 |
| BseAI | TCCGGA | 2 cut(s) | 1438, 2032 |
| BseBI | CCWGG | 6 cut(s) | 77, 990, 1544, 1566, 1870, 1952 |
| BseCI | ATCGAT | 1 cut(s) | 1929 |
| BseDI | CCNNGG | 7 cut(s) | 988, 1868, 1944, 2074, 2384, 3066, 3571 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1445, 1525 |
| BseMI | GCAATG | 1 cut(s) | 2828 |
| BseMII | CTCAG | 2 cut(s) | 2480, 3148 |
| BseNI | ACTGG | 6 cut(s) | 162, 288, 583, 2473, 2945, 3407 |
| BseRI | GAGGAG | 1 cut(s) | 180 |
| BseSI | GKGCMC | 1 cut(s) | 2445 |
| BseXI | GCAGC | 8 cut(s) | 100, 364, 470, 1177, 1408, 2066, 2643, 2696 |
| BseYI | CCCAGC | 1 cut(s) | 2876 |
| BsgI | GTGCAG | 1 cut(s) | 2695 |
| BshFI | GGCC | 7 cut(s) | 75, 431, 465, 987, 1902, 1955, 3576 |
| BshNI | GGYRCC | 2 cut(s) | 779, 881 |
| BshVI | ATCGAT | 1 cut(s) | 1929 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2952 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1014 |
| BsiSI | CCGG | 6 cut(s) | 363, 1439, 1701, 2033, 2591, 3206 |
| BslFI | GGGAC | 5 cut(s) | 192, 860, 2229, 2437, 2653 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1445, 1525 |
| BsmFI | GGGAC | 5 cut(s) | 192, 860, 2229, 2437, 2653 |
| BsnI | GGCC | 7 cut(s) | 75, 431, 465, 987, 1902, 1955, 3576 |
| Bso31I | GGTCTC | 2 cut(s) | 2322, 2858 |
| BsoBI | CYCGRG | 1 cut(s) | 1014 |
| Bsp119I | TTCGAA | 1 cut(s) | 3293 |
| Bsp1286I | GDGCHC | 4 cut(s) | 2445, 2688, 2901, 2952 |
| Bsp13I | TCCGGA | 2 cut(s) | 1438, 2032 |
| Bsp1407I | TGTACA | 2 cut(s) | 1148, 1314 |
| Bsp19I | CCATGG | 2 cut(s) | 1944, 2384 |
| BspACI | CCGC | 8 cut(s) | 183, 601, 904, 1088, 2421, 2600, 2929, 3434 |
| BspANI | GGCC | 7 cut(s) | 75, 431, 465, 987, 1902, 1955, 3576 |
| BspCNI | CTCAG | 2 cut(s) | 2481, 3147 |
| BspDI | ATCGAT | 1 cut(s) | 1929 |
| BspEI | TCCGGA | 2 cut(s) | 1438, 2032 |
| BspLI | GGNNCC | 8 cut(s) | 180, 181, 781, 883, 902, 1686, 2604, 3331 |
| BspMAI | CTGCAG | 3 cut(s) | 293, 1195, 3025 |
| BspMI | ACCTGC | 1 cut(s) | 1165 |
| BspPI | GGATC | 8 cut(s) | 1510, 1679, 1692, 1934, 2286, 2480, 3048, 3256 |
| BspQI | GCTCTTC | 2 cut(s) | 1554, 2646 |
| BspT104I | TTCGAA | 1 cut(s) | 3293 |
| BspT107I | GGYRCC | 2 cut(s) | 779, 881 |
| BspTI | CTTAAG | 1 cut(s) | 1714 |
| BspTNI | GGTCTC | 2 cut(s) | 2322, 2858 |
| BsrBI | CCGCTC | 2 cut(s) | 2421, 2929 |
| BsrDI | GCAATG | 1 cut(s) | 2828 |
| BsrGI | TGTACA | 2 cut(s) | 1148, 1314 |
| BsrI | ACTGG | 6 cut(s) | 162, 288, 583, 2473, 2945, 3407 |
| BssECI | CCNNGG | 7 cut(s) | 988, 1868, 1944, 2074, 2384, 3066, 3571 |
| BssNAI | GTATAC | 1 cut(s) | 2053 |
| BssNI | GRCGYC | 1 cut(s) | 1599 |
| BssT1I | CCWWGG | 4 cut(s) | 1944, 2074, 2384, 3571 |
| Bst1107I | GTATAC | 1 cut(s) | 2053 |
| Bst2UI | CCWGG | 6 cut(s) | 77, 990, 1544, 1566, 1870, 1952 |
| Bst6I | CTCTTC | 7 cut(s) | 16, 733, 1119, 1554, 2646, 3053, 3807 |
| BstACI | GRCGYC | 1 cut(s) | 1599 |
| BstAFI | CTTAAG | 1 cut(s) | 1714 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1187 |
| BstAUI | TGTACA | 2 cut(s) | 1148, 1314 |
| BstBAI | YACGTR | 1 cut(s) | 1143 |
| BstBI | TTCGAA | 1 cut(s) | 3293 |
| BstC8I | GCNNGC | 5 cut(s) | 463, 702, 1138, 2927, 3130 |
| BstDEI | CTNAG | 6 cut(s) | 1730, 1911, 1934, 2489, 2846, 3134 |
| BstDSI | CCRYGG | 2 cut(s) | 1944, 2384 |
| BstHHI | GCGC | 2 cut(s) | 354, 2084 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1187, 1653, 1864, 2715, 2817, 3274 |
| BstNI | CCWGG | 6 cut(s) | 77, 990, 1544, 1566, 1870, 1952 |
| BstNSI | RCATGY | 1 cut(s) | 1377 |
| BstSCI | CCNGG | 8 cut(s) | 75, 988, 1542, 1564, 1700, 1868, 1950, 3205 |
| BstSFI | CTRYAG | 6 cut(s) | 289, 660, 876, 1191, 2011, 3021 |
| BstSLI | GKGCMC | 1 cut(s) | 2445 |
| BstV1I | GCAGC | 8 cut(s) | 100, 364, 470, 1177, 1408, 2066, 2643, 2696 |
| BstV2I | GAAGAC | 3 cut(s) | 49, 603, 2951 |
| BstX2I | RGATCY | 4 cut(s) | 1300, 1684, 2842, 3248 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1951 |
| BstYI | RGATCY | 4 cut(s) | 1300, 1684, 2842, 3248 |
| BstZ17I | GTATAC | 1 cut(s) | 2053 |
| Bsu15I | ATCGAT | 1 cut(s) | 1929 |
| BsuI | GTATCC | 1 cut(s) | 73 |
| BsuRI | GGCC | 7 cut(s) | 75, 431, 465, 987, 1902, 1955, 3576 |
| BsuTUI | ATCGAT | 1 cut(s) | 1929 |
| BtgI | CCRYGG | 2 cut(s) | 1944, 2384 |
| BtrI | CACGTC | 2 cut(s) | 937, 3451 |
| BtsIMutI | CAGTG | 6 cut(s) | 745, 873, 2445, 2952, 3021, 3414 |
| BveI | ACCTGC | 1 cut(s) | 1165 |
| Cac8I | GCNNGC | 5 cut(s) | 463, 702, 1138, 2927, 3130 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1264, 3020 |
| CfoI | GCGC | 2 cut(s) | 354, 2084 |
| Cfr13I | GGNCC | 4 cut(s) | 179, 986, 1948, 3063 |
| ClaI | ATCGAT | 1 cut(s) | 1929 |
| CseI | GACGC | 2 cut(s) | 749, 3596 |
| Csp6I | GTAC | 8 cut(s) | 780, 909, 1043, 1149, 1315, 1554, 1610, 1640 |
| CviQI | GTAC | 8 cut(s) | 780, 909, 1043, 1149, 1315, 1554, 1610, 1640 |
| DdeI | CTNAG | 6 cut(s) | 1730, 1911, 1934, 2489, 2846, 3134 |
| DraI | TTTAAA | 2 cut(s) | 192, 2751 |
| DraIII | CACNNNGTG | 2 cut(s) | 258, 1513 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3526 |
| EaeI | YGGCCR | 2 cut(s) | 429, 1953 |
| Eam1104I | CTCTTC | 7 cut(s) | 16, 733, 1119, 1554, 2646, 3053, 3807 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3526 |
| EarI | CTCTTC | 7 cut(s) | 16, 733, 1119, 1554, 2646, 3053, 3807 |
| EciI | GGCGGA | 2 cut(s) | 893, 1103 |
| Eco130I | CCWWGG | 4 cut(s) | 1944, 2074, 2384, 3571 |
| Eco24I | GRGCYC | 2 cut(s) | 2688, 2901 |
| Eco31I | GGTCTC | 2 cut(s) | 2322, 2858 |
| Eco47I | GGWCC | 3 cut(s) | 179, 1948, 3063 |
| Eco57I | CTGAAG | 3 cut(s) | 615, 1100, 1289 |
| Eco72I | CACGTG | 1 cut(s) | 1143 |
| Eco88I | CYCGRG | 1 cut(s) | 1014 |
| EcoO109I | RGGNCCY | 1 cut(s) | 179 |
| EcoRI | GAATTC | 1 cut(s) | 2264 |
| EcoRII | CCWGG | 6 cut(s) | 75, 988, 1542, 1564, 1868, 1950 |
| EcoT14I | CCWWGG | 4 cut(s) | 1944, 2074, 2384, 3571 |
| EcoT22I | ATGCAT | 1 cut(s) | 1710 |
| EcoT38I | GRGCYC | 2 cut(s) | 2688, 2901 |
| ErhI | CCWWGG | 4 cut(s) | 1944, 2074, 2384, 3571 |
| FaqI | GGGAC | 5 cut(s) | 192, 860, 2229, 2437, 2653 |
| FauI | CCCGC | 2 cut(s) | 190, 2414 |
| FauNDI | CATATG | 2 cut(s) | 1499, 1863 |
| FbaI | TGATCA | 1 cut(s) | 222 |
| FblI | GTMKAC | 1 cut(s) | 2052 |
| Fnu4HI | GCNGC | 9 cut(s) | 114, 378, 459, 1191, 1422, 2080, 2657, 2710, 2930 |
| FriOI | GRGCYC | 2 cut(s) | 2688, 2901 |
| Fsp4HI | GCNGC | 9 cut(s) | 114, 378, 459, 1191, 1422, 2080, 2657, 2710, 2930 |
| FspBI | CTAG | 5 cut(s) | 842, 1763, 2075, 2574, 2963 |
| FspI | TGCGCA | 1 cut(s) | 2083 |
| GlaI | GCGC | 2 cut(s) | 353, 2083 |
| GluI | GCNGC | 9 cut(s) | 114, 378, 459, 1191, 1422, 2080, 2657, 2710, 2930 |
| GsaI | CCCAGC | 1 cut(s) | 2880 |
| GsuI | CTGGAG | 3 cut(s) | 179, 1891, 2639 |
| HaeIII | GGCC | 7 cut(s) | 75, 431, 465, 987, 1902, 1955, 3576 |
| HapII | CCGG | 6 cut(s) | 363, 1439, 1701, 2033, 2591, 3206 |
| HgaI | GACGC | 2 cut(s) | 749, 3596 |
| HhaI | GCGC | 2 cut(s) | 354, 2084 |
| Hin1I | GRCGYC | 1 cut(s) | 1599 |
| Hin6I | GCGC | 2 cut(s) | 352, 2082 |
| HinP1I | GCGC | 2 cut(s) | 352, 2082 |
| HincII | GTYRAC | 2 cut(s) | 889, 1669 |
| HindII | GTYRAC | 2 cut(s) | 889, 1669 |
| HindIII | AAGCTT | 4 cut(s) | 444, 1692, 2818, 3266 |
| HpaII | CCGG | 6 cut(s) | 363, 1439, 1701, 2033, 2591, 3206 |
| HphI | GGTGA | 3 cut(s) | 1604, 1690, 3389 |
| Hpy166II | GTNNAC | 9 cut(s) | 889, 940, 1315, 1669, 1984, 2053, 2122, 3170, 3614 |
| Hpy8I | GTNNAC | 9 cut(s) | 889, 940, 1315, 1669, 1984, 2053, 2122, 3170, 3614 |
| Hpy99I | CGWCG | 5 cut(s) | 743, 938, 2505, 3377, 3424 |
| HpyAV | CCTTC | 6 cut(s) | 151, 400, 1244, 1793, 2181, 2313 |
| HpyCH4IV | ACGT | 8 cut(s) | 772, 936, 1142, 1286, 1599, 3172, 3450, 3610 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1187, 1653, 1864, 2715, 2817, 3274 |
| HpyF3I | CTNAG | 6 cut(s) | 1730, 1911, 1934, 2489, 2846, 3134 |
| HpySE526I | ACGT | 8 cut(s) | 772, 936, 1142, 1286, 1599, 3172, 3450, 3610 |
| Hsp92I | GRCGYC | 1 cut(s) | 1599 |
| HspAI | GCGC | 2 cut(s) | 352, 2082 |
| KflI | GGGWCCC | 1 cut(s) | 179 |
| Kpn2I | TCCGGA | 2 cut(s) | 1438, 2032 |
| KpnI | GGTACC | 1 cut(s) | 783 |
| Ksp22I | TGATCA | 1 cut(s) | 222 |
| LguI | GCTCTTC | 2 cut(s) | 1554, 2646 |
| LmnI | GCTCC | 6 cut(s) | 590, 788, 906, 1872, 2602, 2955 |
| Lsp1109I | GCAGC | 8 cut(s) | 100, 364, 470, 1177, 1408, 2066, 2643, 2696 |
| LweI | GCATC | 7 cut(s) | 693, 697, 1494, 1695, 1768, 2889, 3115 |
| MaeI | CTAG | 5 cut(s) | 842, 1763, 2075, 2574, 2963 |
| MaeII | ACGT | 8 cut(s) | 772, 936, 1142, 1286, 1599, 3172, 3450, 3610 |
| MaeIII | GTNAC | 8 cut(s) | 1805, 1937, 3016, 3622, 3638, 3680, 3717, 3762 |
| MbiI | CCGCTC | 2 cut(s) | 2421, 2929 |
| MflI | RGATCY | 4 cut(s) | 1300, 1684, 2842, 3248 |
| MhlI | GDGCHC | 4 cut(s) | 2445, 2688, 2901, 2952 |
| MlsI | TGGCCA | 1 cut(s) | 431 |
| MluNI | TGGCCA | 1 cut(s) | 431 |
| MlyI | GAGTC | 6 cut(s) | 717, 1020, 1118, 3720, 3765, 3802 |
| MmeI | TCCRAC | 3 cut(s) | 949, 1662, 1942 |
| Mox20I | TGGCCA | 1 cut(s) | 431 |
| Mph1103I | ATGCAT | 1 cut(s) | 1710 |
| MroI | TCCGGA | 2 cut(s) | 1438, 2032 |
| MroXI | GAANNNNTTC | 5 cut(s) | 645, 1302, 1358, 2328, 2799 |
| MscI | TGGCCA | 1 cut(s) | 431 |
| Msp20I | TGGCCA | 1 cut(s) | 431 |
| MspA1I | CMGCKG | 3 cut(s) | 461, 1120, 3434 |
| MspCI | CTTAAG | 1 cut(s) | 1714 |
| MspI | CCGG | 6 cut(s) | 363, 1439, 1701, 2033, 2591, 3206 |
| MspR9I | CCNGG | 8 cut(s) | 77, 990, 1544, 1566, 1702, 1870, 1952, 3207 |
| MvaI | CCWGG | 6 cut(s) | 77, 990, 1544, 1566, 1870, 1952 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1187, 1653, 1864, 2715, 2817, 3274 |
| NciI | CCSGG | 2 cut(s) | 1702, 3207 |
| NcoI | CCATGG | 2 cut(s) | 1944, 2384 |
| NdeI | CATATG | 2 cut(s) | 1499, 1863 |
| NlaIV | GGNNCC | 8 cut(s) | 180, 181, 781, 883, 902, 1686, 2604, 3331 |
| NmuCI | GTSAC | 6 cut(s) | 1937, 3016, 3638, 3680, 3717, 3762 |
| NsbI | TGCGCA | 1 cut(s) | 2083 |
| NsiI | ATGCAT | 1 cut(s) | 1710 |
| NspI | RCATGY | 1 cut(s) | 1377 |
| NspV | TTCGAA | 1 cut(s) | 3293 |
| OliI | CACNNNNGTG | 3 cut(s) | 1590, 3724, 3806 |
| PaeR7I | CTCGAG | 1 cut(s) | 1014 |
| PaqCI | CACCTGC | 1 cut(s) | 1165 |
| PciSI | GCTCTTC | 2 cut(s) | 1554, 2646 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1021 |
| PdmI | GAANNNNTTC | 5 cut(s) | 645, 1302, 1358, 2328, 2799 |
| PflFI | GACNNNGTC | 2 cut(s) | 2220, 3004 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1525 |
| PfoI | TCCNGGA | 2 cut(s) | 1542, 3205 |
| PkrI | GCNGC | 9 cut(s) | 115, 379, 460, 1192, 1423, 2081, 2658, 2711, 2931 |
| PleI | GAGTC | 6 cut(s) | 717, 1020, 1117, 3719, 3764, 3801 |
| PmaCI | CACGTG | 1 cut(s) | 1143 |
| PmlI | CACGTG | 1 cut(s) | 1143 |
| PpsI | GAGTC | 6 cut(s) | 717, 1020, 1117, 3719, 3764, 3801 |
| Ppu21I | YACGTR | 1 cut(s) | 1143 |
| PpuMI | RGGWCCY | 1 cut(s) | 179 |
| PsiI | TTATAA | 1 cut(s) | 1007 |
| Psp1406I | AACGTT | 3 cut(s) | 772, 1286, 3172 |
| Psp5II | RGGWCCY | 1 cut(s) | 179 |
| Psp6I | CCWGG | 6 cut(s) | 75, 988, 1542, 1564, 1868, 1950 |
| PspCI | CACGTG | 1 cut(s) | 1143 |
| PspFI | CCCAGC | 1 cut(s) | 2876 |
| PspGI | CCWGG | 6 cut(s) | 75, 988, 1542, 1564, 1868, 1950 |
| PspN4I | GGNNCC | 8 cut(s) | 180, 181, 781, 883, 902, 1686, 2604, 3331 |
| PspPI | GGNCC | 4 cut(s) | 179, 986, 1948, 3063 |
| PspPPI | RGGWCCY | 1 cut(s) | 179 |
| PstI | CTGCAG | 3 cut(s) | 293, 1195, 3025 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1264, 3020 |
| PsuI | RGATCY | 4 cut(s) | 1300, 1684, 2842, 3248 |
| PsyI | GACNNNGTC | 2 cut(s) | 2220, 3004 |
| PvuII | CAGCTG | 2 cut(s) | 461, 1120 |
| RsaI | GTAC | 8 cut(s) | 781, 910, 1044, 1150, 1316, 1555, 1611, 1641 |
| RsaNI | GTAC | 8 cut(s) | 780, 909, 1043, 1149, 1315, 1554, 1610, 1640 |
| SapI | GCTCTTC | 2 cut(s) | 1554, 2646 |
| SatI | GCNGC | 9 cut(s) | 114, 378, 459, 1191, 1422, 2080, 2657, 2710, 2930 |
| Sau96I | GGNCC | 4 cut(s) | 179, 986, 1948, 3063 |
| SchI | GAGTC | 6 cut(s) | 717, 1020, 1118, 3720, 3765, 3802 |
| ScrFI | CCNGG | 8 cut(s) | 77, 990, 1544, 1566, 1702, 1870, 1952, 3207 |
| SduI | GDGCHC | 4 cut(s) | 2445, 2688, 2901, 2952 |
| SfaNI | GCATC | 7 cut(s) | 693, 697, 1494, 1695, 1768, 2889, 3115 |
| SfcI | CTRYAG | 6 cut(s) | 289, 660, 876, 1191, 2011, 3021 |
| Sfr274I | CTCGAG | 1 cut(s) | 1014 |
| SfuI | TTCGAA | 1 cut(s) | 3293 |
| SinI | GGWCC | 3 cut(s) | 179, 1948, 3063 |
| SlaI | CTCGAG | 1 cut(s) | 1014 |
| SsiI | CCGC | 8 cut(s) | 183, 601, 904, 1088, 2421, 2600, 2929, 3434 |
| SspI | AATATT | 2 cut(s) | 3141, 3262 |
| SspMI | CTAG | 5 cut(s) | 842, 1763, 2075, 2574, 2963 |
| StyD4I | CCNGG | 8 cut(s) | 75, 988, 1542, 1564, 1700, 1868, 1950, 3205 |
| StyI | CCWWGG | 4 cut(s) | 1944, 2074, 2384, 3571 |
| TaiI | ACGT | 8 cut(s) | 775, 939, 1145, 1289, 1602, 3175, 3453, 3613 |
| TaqI | TCGA | 6 cut(s) | 233, 738, 1015, 1929, 2095, 3293 |
| TaqII | GACCGA | 1 cut(s) | 3080 |
| TatI | WGTACW | 4 cut(s) | 1148, 1314, 1609, 1639 |
| TauI | GCSGC | 1 cut(s) | 2932 |
| TscAI | CASTG | 6 cut(s) | 752, 880, 2445, 2952, 3021, 3414 |
| TseFI | GTSAC | 6 cut(s) | 1937, 3016, 3638, 3680, 3717, 3762 |
| TseI | GCWGC | 8 cut(s) | 113, 377, 458, 1190, 1421, 2079, 2656, 2709 |
| Tsp45I | GTSAC | 6 cut(s) | 1937, 3016, 3638, 3680, 3717, 3762 |
| TspGWI | ACGGA | 6 cut(s) | 208, 1115, 3257, 3326, 3437, 3521 |
| TspRI | CASTG | 6 cut(s) | 752, 880, 2445, 2952, 3021, 3414 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2220, 3004 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1525 |
| Vha464I | CTTAAG | 1 cut(s) | 1714 |
| VpaK11BI | GGWCC | 3 cut(s) | 179, 1948, 3063 |
| XapI | RAATTY | 9 cut(s) | 494, 612, 853, 1215, 2209, 2264, 2799, 3216, 3596 |
| XbaI | TCTAGA | 2 cut(s) | 1762, 2962 |
| XceI | RCATGY | 1 cut(s) | 1377 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 259, 2891 |
| XhoI | CTCGAG | 1 cut(s) | 1014 |
| XmaJI | CCTAGG | 1 cut(s) | 2074 |
| XmiI | GTMKAC | 1 cut(s) | 2052 |
| XmnI | GAANNNNTTC | 5 cut(s) | 645, 1302, 1358, 2328, 2799 |
| XspI | CTAG | 5 cut(s) | 842, 1763, 2075, 2574, 2963 |
| ZraI | GACGTC | 1 cut(s) | 1600 |
| Zsp2I | ATGCAT | 1 cut(s) | 1710 |