Disease resistance protein (TIR-NBS-LRR class)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 12 - 191 | 1.8e-50 | TIR domain |
| TIR_2 | PF13676 | 15 - 110 | 1.8e-13 | TIR domain |
| NB-ARC | PF00931 | 213 - 376 | 2.1e-12 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 481 - 550 | 9.8e-20 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 691 - 794 | 5.6e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 787 - 947 | 8.8e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 807 - 891 | 5e-06 | Leucine-rich repeat region |
| C-JID | PF20160 | 1011 - 1163 | 1.7e-16 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 995, 1907 |
| Acc16I | TGCGCA | 1 cut(s) | 2949 |
| Acc65I | GGTACC | 1 cut(s) | 767 |
| AccB1I | GGYRCC | 1 cut(s) | 767 |
| AccBSI | CCGCTC | 1 cut(s) | 3567 |
| AccII | CGCG | 2 cut(s) | 242, 3561 |
| AccIII | TCCGGA | 1 cut(s) | 1540 |
| AclWI | GGATC | 4 cut(s) | 1658, 2975, 3085, 3431 |
| AcoI | YGGCCR | 3 cut(s) | 417, 973, 3562 |
| AcuI | CTGAAG | 6 cut(s) | 1097, 1149, 1391, 2133, 2747, 3339 |
| AfaI | GTAC | 8 cut(s) | 769, 862, 898, 1199, 1688, 1785, 2265, 3299 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1400, 1547, 1765, 3571 |
| AhlI | ACTAGT | 2 cut(s) | 1015, 1042 |
| AjnI | CCWGG | 2 cut(s) | 63, 2983 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 590, 622, 764, 796, 954, 986, 2843, 2875 |
| Alw26I | GTCTC | 8 cut(s) | 356, 468, 1028, 1565, 1578, 2373, 2579, 2699 |
| AlwI | GGATC | 4 cut(s) | 1658, 2975, 3085, 3431 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2577 |
| Ama87I | CYCGRG | 2 cut(s) | 486, 1002 |
| Aor13HI | TCCGGA | 1 cut(s) | 1540 |
| AoxI | GGCC | 8 cut(s) | 61, 417, 586, 973, 1913, 2635, 2987, 3562 |
| ApeKI | GCWGC | 7 cut(s) | 446, 1301, 1523, 2503, 2931, 2972, 3328 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3586, 3618 |
| AseI | ATTAAT | 2 cut(s) | 2112, 3528 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 633, 1110, 1404, 1884, 2304 |
| Asp718I | GGTACC | 1 cut(s) | 767 |
| AspLEI | GCGC | 5 cut(s) | 342, 1677, 2760, 2950, 3367 |
| AspS9I | GGNCC | 5 cut(s) | 167, 1024, 1358, 2987, 3111 |
| AsuC2I | CCSGG | 2 cut(s) | 1668, 3036 |
| AsuHPI | GGTGA | 4 cut(s) | 881, 1300, 3224, 3469 |
| AsuII | TTCGAA | 1 cut(s) | 726 |
| AvaI | CYCGRG | 2 cut(s) | 486, 1002 |
| AvaII | GGWCC | 4 cut(s) | 167, 1024, 1358, 3111 |
| BalI | TGGCCA | 1 cut(s) | 419 |
| BanI | GGYRCC | 1 cut(s) | 767 |
| BanII | GRGCYC | 1 cut(s) | 2730 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 29, 61 |
| BbsI | GAAGAC | 4 cut(s) | 37, 1877, 2312, 2834 |
| BbvI | GCAGC | 7 cut(s) | 458, 1288, 1510, 2490, 2943, 2959, 3340 |
| BccI | CCATC | 9 cut(s) | 99, 337, 861, 1328, 1541, 1948, 2230, 2717, 2804 |
| BceAI | ACGGC | 1 cut(s) | 2650 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2786, 2820 |
| BciT130I | CCWGG | 2 cut(s) | 65, 2985 |
| BciVI | GTATCC | 2 cut(s) | 61, 3032 |
| BclI | TGATCA | 1 cut(s) | 210 |
| BcnI | CCSGG | 2 cut(s) | 1668, 3036 |
| BcoDI | GTCTC | 8 cut(s) | 356, 468, 1028, 1565, 1578, 2373, 2579, 2699 |
| BcuI | ACTAGT | 2 cut(s) | 1015, 1042 |
| BfaI | CTAG | 9 cut(s) | 830, 1016, 1043, 1917, 2267, 2594, 3441, 3552, 3582 |
| BfmI | CTRYAG | 5 cut(s) | 648, 864, 1423, 1659, 3399 |
| BfoI | RGCGCY | 1 cut(s) | 2761 |
| BfuI | GTATCC | 2 cut(s) | 61, 3032 |
| BglII | AGATCT | 2 cut(s) | 1074, 1873 |
| Bme1390I | CCNGG | 4 cut(s) | 65, 1668, 2985, 3036 |
| Bme18I | GGWCC | 4 cut(s) | 167, 1024, 1358, 3111 |
| BmeT110I | CYCGRG | 2 cut(s) | 486, 1002 |
| BmgT120I | GGNCC | 5 cut(s) | 167, 1024, 1358, 2987, 3111 |
| BmiI | GGNNCC | 5 cut(s) | 168, 169, 769, 890, 2360 |
| BmrFI | CCNGG | 4 cut(s) | 65, 1668, 2985, 3036 |
| BmrI | ACTGGG | 1 cut(s) | 2778 |
| BmuI | ACTGGG | 1 cut(s) | 2778 |
| BpiI | GAAGAC | 4 cut(s) | 37, 1877, 2312, 2834 |
| BpmI | CTGGAG | 2 cut(s) | 167, 978 |
| Bpu14I | TTCGAA | 1 cut(s) | 726 |
| BpuEI | CTTGAG | 6 cut(s) | 1049, 1853, 2053, 2330, 2495, 2534 |
| BpuMI | CCSGG | 2 cut(s) | 1668, 3036 |
| Bsa29I | ATCGAT | 1 cut(s) | 2420 |
| BsaAI | YACGTR | 1 cut(s) | 2675 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1854 |
| BsaI | GGTCTC | 2 cut(s) | 468, 2699 |
| BsaJI | CCNNGG | 7 cut(s) | 976, 1146, 1260, 1982, 2354, 2984, 3050 |
| BsaWI | WCCGGW | 2 cut(s) | 1360, 1540 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 147, 177, 2763, 2793 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1400, 1547, 1765, 3571 |
| Bse1I | ACTGG | 6 cut(s) | 150, 276, 355, 571, 2571, 2784 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1854 |
| BseAI | TCCGGA | 1 cut(s) | 1540 |
| BseBI | CCWGG | 2 cut(s) | 65, 2985 |
| BseCI | ATCGAT | 1 cut(s) | 2420 |
| BseDI | CCNNGG | 7 cut(s) | 976, 1146, 1260, 1982, 2354, 2984, 3050 |
| BseJI | GATNNNNATC | 1 cut(s) | 1854 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1400, 1547, 1765, 3571 |
| BseMII | CTCAG | 5 cut(s) | 1814, 2180, 2694, 3116, 3561 |
| BseNI | ACTGG | 6 cut(s) | 150, 276, 355, 571, 2571, 2784 |
| BseRI | GAGGAG | 3 cut(s) | 168, 1046, 1184 |
| BseX3I | CGGCCG | 1 cut(s) | 3562 |
| BseXI | GCAGC | 7 cut(s) | 458, 1288, 1510, 2490, 2943, 2959, 3340 |
| BsgI | GTGCAG | 1 cut(s) | 2489 |
| Bsh1236I | CGCG | 2 cut(s) | 242, 3561 |
| Bsh1285I | CGRYCG | 2 cut(s) | 3339, 3565 |
| BshFI | GGCC | 8 cut(s) | 63, 419, 588, 975, 1915, 2637, 2989, 3564 |
| BshNI | GGYRCC | 1 cut(s) | 767 |
| BshVI | ATCGAT | 1 cut(s) | 2420 |
| BsiEI | CGRYCG | 2 cut(s) | 3339, 3565 |
| BsiHKCI | CYCGRG | 2 cut(s) | 486, 1002 |
| BsiSI | CCGG | 5 cut(s) | 1361, 1541, 1667, 1739, 3035 |
| BslFI | GGGAC | 6 cut(s) | 180, 848, 1683, 2336, 2407, 2468 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1400, 1547, 1765, 3571 |
| BsmAI | GTCTC | 8 cut(s) | 356, 468, 1028, 1565, 1578, 2373, 2579, 2699 |
| BsmFI | GGGAC | 6 cut(s) | 180, 848, 1683, 2336, 2407, 2468 |
| BsmI | GAATGC | 3 cut(s) | 281, 1308, 2809 |
| BsnI | GGCC | 8 cut(s) | 63, 419, 588, 975, 1915, 2637, 2989, 3564 |
| Bso31I | GGTCTC | 2 cut(s) | 468, 2699 |
| BsoBI | CYCGRG | 2 cut(s) | 486, 1002 |
| Bsp119I | TTCGAA | 1 cut(s) | 726 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2730 |
| Bsp13I | TCCGGA | 1 cut(s) | 1540 |
| Bsp1407I | TGTACA | 1 cut(s) | 1686 |
| BspANI | GGCC | 8 cut(s) | 63, 419, 588, 975, 1915, 2637, 2989, 3564 |
| BspCNI | CTCAG | 5 cut(s) | 1815, 2181, 2695, 3115, 3562 |
| BspDI | ATCGAT | 1 cut(s) | 2420 |
| BspEI | TCCGGA | 1 cut(s) | 1540 |
| BspFNI | CGCG | 2 cut(s) | 242, 3561 |
| BspHI | TCATGA | 1 cut(s) | 1183 |
| BspLI | GGNNCC | 5 cut(s) | 168, 169, 769, 890, 2360 |
| BspPI | GGATC | 4 cut(s) | 1658, 2975, 3085, 3431 |
| BspQI | GCTCTTC | 1 cut(s) | 1124 |
| BspT104I | TTCGAA | 1 cut(s) | 726 |
| BspT107I | GGYRCC | 1 cut(s) | 767 |
| BspTNI | GGTCTC | 2 cut(s) | 468, 2699 |
| BsrBI | CCGCTC | 1 cut(s) | 3567 |
| BsrGI | TGTACA | 1 cut(s) | 1686 |
| BsrI | ACTGG | 6 cut(s) | 150, 276, 355, 571, 2571, 2784 |
| BssECI | CCNNGG | 7 cut(s) | 976, 1146, 1260, 1982, 2354, 2984, 3050 |
| BssT1I | CCWWGG | 3 cut(s) | 1982, 2354, 3050 |
| Bst2UI | CCWGG | 2 cut(s) | 65, 2985 |
| Bst4CI | ACNGT | 7 cut(s) | 737, 795, 1368, 1788, 2263, 2537, 2833 |
| Bst6I | CTCTTC | 5 cut(s) | 16, 721, 1116, 1124, 1773 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2524 |
| BstAUI | TGTACA | 1 cut(s) | 1686 |
| BstBAI | YACGTR | 1 cut(s) | 2675 |
| BstBI | TTCGAA | 1 cut(s) | 726 |
| BstC8I | GCNNGC | 6 cut(s) | 593, 690, 1306, 1913, 2756, 3333 |
| BstDEI | CTNAG | 8 cut(s) | 1823, 2025, 2189, 2245, 2703, 2738, 3102, 3570 |
| BstDSI | CCRYGG | 2 cut(s) | 1146, 1260 |
| BstFNI | CGCG | 2 cut(s) | 242, 3561 |
| BstH2I | RGCGCY | 1 cut(s) | 2761 |
| BstHHI | GCGC | 5 cut(s) | 342, 1677, 2760, 2950, 3367 |
| BstMAI | GTCTC | 8 cut(s) | 356, 468, 1028, 1565, 1578, 2373, 2579, 2699 |
| BstMCI | CGRYCG | 2 cut(s) | 3339, 3565 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 239, 1681, 2524, 2643, 3341, 3371, 3380 |
| BstNI | CCWGG | 2 cut(s) | 65, 2985 |
| BstNSI | RCATGY | 2 cut(s) | 595, 1479 |
| BstSCI | CCNGG | 4 cut(s) | 63, 1666, 2983, 3034 |
| BstSFI | CTRYAG | 5 cut(s) | 648, 864, 1423, 1659, 3399 |
| BstUI | CGCG | 2 cut(s) | 242, 3561 |
| BstV1I | GCAGC | 7 cut(s) | 458, 1288, 1510, 2490, 2943, 2959, 3340 |
| BstV2I | GAAGAC | 4 cut(s) | 37, 1877, 2312, 2834 |
| BstX2I | RGATCY | 4 cut(s) | 1074, 1663, 1873, 3077 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2538 |
| BstYI | RGATCY | 4 cut(s) | 1074, 1663, 1873, 3077 |
| BstZI | CGGCCG | 1 cut(s) | 3562 |
| Bsu15I | ATCGAT | 1 cut(s) | 2420 |
| BsuI | GTATCC | 2 cut(s) | 61, 3032 |
| BsuRI | GGCC | 8 cut(s) | 63, 419, 588, 975, 1915, 2637, 2989, 3564 |
| BsuTUI | ATCGAT | 1 cut(s) | 2420 |
| BtgI | CCRYGG | 2 cut(s) | 1146, 1260 |
| BtsI | GCAGTG | 1 cut(s) | 3374 |
| BtsIMutI | CAGTG | 3 cut(s) | 733, 2533, 3374 |
| Cac8I | GCNNGC | 6 cut(s) | 593, 690, 1306, 1913, 2756, 3333 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2577 |
| CciI | TCATGA | 1 cut(s) | 1183 |
| CciNI | GCGGCCGC | 1 cut(s) | 3562 |
| CfoI | GCGC | 5 cut(s) | 342, 1677, 2760, 2950, 3367 |
| Cfr13I | GGNCC | 5 cut(s) | 167, 1024, 1358, 2987, 3111 |
| ClaI | ATCGAT | 1 cut(s) | 2420 |
| Csp6I | GTAC | 8 cut(s) | 768, 861, 897, 1198, 1687, 1784, 2264, 3298 |
| CviAII | CATG | 9 cut(s) | 290, 380, 592, 707, 1064, 1184, 1476, 2229, 2365 |
| CviQI | GTAC | 8 cut(s) | 768, 861, 897, 1198, 1687, 1784, 2264, 3298 |
| DdeI | CTNAG | 8 cut(s) | 1823, 2025, 2189, 2245, 2703, 2738, 3102, 3570 |
| DraI | TTTAAA | 4 cut(s) | 1128, 1219, 2253, 3417 |
| EaeI | YGGCCR | 3 cut(s) | 417, 973, 3562 |
| EagI | CGGCCG | 1 cut(s) | 3562 |
| Eam1104I | CTCTTC | 5 cut(s) | 16, 721, 1116, 1124, 1773 |
| EarI | CTCTTC | 5 cut(s) | 16, 721, 1116, 1124, 1773 |
| EciI | GGCGGA | 1 cut(s) | 3284 |
| EclXI | CGGCCG | 1 cut(s) | 3562 |
| Eco130I | CCWWGG | 3 cut(s) | 1982, 2354, 3050 |
| Eco24I | GRGCYC | 1 cut(s) | 2730 |
| Eco31I | GGTCTC | 2 cut(s) | 468, 2699 |
| Eco47I | GGWCC | 4 cut(s) | 167, 1024, 1358, 3111 |
| Eco52I | CGGCCG | 1 cut(s) | 3562 |
| Eco57I | CTGAAG | 6 cut(s) | 1097, 1149, 1391, 2133, 2747, 3339 |
| Eco88I | CYCGRG | 2 cut(s) | 486, 1002 |
| EcoO109I | RGGNCCY | 2 cut(s) | 167, 1024 |
| EcoRI | GAATTC | 3 cut(s) | 2240, 3274, 3306 |
| EcoRII | CCWGG | 2 cut(s) | 63, 2983 |
| EcoT14I | CCWWGG | 3 cut(s) | 1982, 2354, 3050 |
| EcoT38I | GRGCYC | 1 cut(s) | 2730 |
| ErhI | CCWWGG | 3 cut(s) | 1982, 2354, 3050 |
| FaeI | CATG | 9 cut(s) | 293, 383, 595, 710, 1067, 1187, 1479, 2232, 2368 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 191, 223, 2959, 2991, 3610, 3642 |
| FaqI | GGGAC | 6 cut(s) | 180, 848, 1683, 2336, 2407, 2468 |
| FatI | CATG | 9 cut(s) | 289, 379, 591, 706, 1063, 1183, 1475, 2228, 2364 |
| FauI | CCCGC | 2 cut(s) | 178, 3324 |
| FauNDI | CATATG | 2 cut(s) | 1601, 1977 |
| FbaI | TGATCA | 1 cut(s) | 210 |
| FriOI | GRGCYC | 1 cut(s) | 2730 |
| FspBI | CTAG | 9 cut(s) | 830, 1016, 1043, 1917, 2267, 2594, 3441, 3552, 3582 |
| FspI | TGCGCA | 1 cut(s) | 2949 |
| GlaI | GCGC | 5 cut(s) | 341, 1676, 2759, 2949, 3366 |
| GsuI | CTGGAG | 2 cut(s) | 167, 978 |
| HaeII | RGCGCY | 1 cut(s) | 2761 |
| HaeIII | GGCC | 8 cut(s) | 63, 419, 588, 975, 1915, 2637, 2989, 3564 |
| HapII | CCGG | 5 cut(s) | 1361, 1541, 1667, 1739, 3035 |
| HhaI | GCGC | 5 cut(s) | 342, 1677, 2760, 2950, 3367 |
| Hin1II | CATG | 9 cut(s) | 293, 383, 595, 710, 1067, 1187, 1479, 2232, 2368 |
| Hin6I | GCGC | 5 cut(s) | 340, 1675, 2758, 2948, 3365 |
| HinP1I | GCGC | 5 cut(s) | 340, 1675, 2758, 2948, 3365 |
| HincII | GTYRAC | 1 cut(s) | 531 |
| HindII | GTYRAC | 1 cut(s) | 531 |
| HindIII | AAGCTT | 5 cut(s) | 432, 2171, 3095, 3342, 3381 |
| HpaII | CCGG | 5 cut(s) | 1361, 1541, 1667, 1739, 3035 |
| HphI | GGTGA | 4 cut(s) | 881, 1300, 3224, 3469 |
| Hpy166II | GTNNAC | 4 cut(s) | 531, 877, 1645, 1689 |
| Hpy8I | GTNNAC | 4 cut(s) | 531, 877, 1645, 1689 |
| Hpy99I | CGWCG | 3 cut(s) | 923, 1865, 2636 |
| HpyCH4III | ACNGT | 7 cut(s) | 737, 795, 1368, 1788, 2263, 2537, 2833 |
| HpyCH4IV | ACGT | 1 cut(s) | 2674 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 239, 1681, 2524, 2643, 3341, 3371, 3380 |
| HpyF3I | CTNAG | 8 cut(s) | 1823, 2025, 2189, 2245, 2703, 2738, 3102, 3570 |
| HpySE526I | ACGT | 1 cut(s) | 2674 |
| Hsp92II | CATG | 9 cut(s) | 293, 383, 595, 710, 1067, 1187, 1479, 2232, 2368 |
| HspAI | GCGC | 5 cut(s) | 340, 1675, 2758, 2948, 3365 |
| KflI | GGGWCCC | 1 cut(s) | 167 |
| Kpn2I | TCCGGA | 1 cut(s) | 1540 |
| KpnI | GGTACC | 1 cut(s) | 771 |
| Ksp22I | TGATCA | 1 cut(s) | 210 |
| LguI | GCTCTTC | 1 cut(s) | 1124 |
| LmnI | GCTCC | 7 cut(s) | 776, 894, 1138, 1252, 1986, 2062, 2928 |
| Lsp1109I | GCAGC | 7 cut(s) | 458, 1288, 1510, 2490, 2943, 2959, 3340 |
| MaeI | CTAG | 9 cut(s) | 830, 1016, 1043, 1917, 2267, 2594, 3441, 3552, 3582 |
| MaeII | ACGT | 1 cut(s) | 2674 |
| MaeIII | GTNAC | 4 cut(s) | 2692, 3148, 3541, 3602 |
| MbiI | CCGCTC | 1 cut(s) | 3567 |
| MflI | RGATCY | 4 cut(s) | 1074, 1663, 1873, 3077 |
| MhlI | GDGCHC | 1 cut(s) | 2730 |
| MlsI | TGGCCA | 1 cut(s) | 419 |
| MluNI | TGGCCA | 1 cut(s) | 419 |
| MlyI | GAGTC | 5 cut(s) | 705, 1030, 1801, 2326, 2433 |
| MmeI | TCCRAC | 4 cut(s) | 1185, 1613, 2416, 2598 |
| Mox20I | TGGCCA | 1 cut(s) | 419 |
| MroI | TCCGGA | 1 cut(s) | 1540 |
| MroXI | GAANNNNTTC | 5 cut(s) | 633, 1110, 1404, 1884, 2304 |
| MscI | TGGCCA | 1 cut(s) | 419 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1128, 1242, 1568, 1604, 3290 |
| Msp20I | TGGCCA | 1 cut(s) | 419 |
| MspA1I | CMGCKG | 2 cut(s) | 3063, 3331 |
| MspI | CCGG | 5 cut(s) | 1361, 1541, 1667, 1739, 3035 |
| MspR9I | CCNGG | 4 cut(s) | 65, 1668, 2985, 3036 |
| Mva1269I | GAATGC | 3 cut(s) | 281, 1308, 2809 |
| MvaI | CCWGG | 2 cut(s) | 65, 2985 |
| MvnI | CGCG | 2 cut(s) | 242, 3561 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 239, 1681, 2524, 2643, 3341, 3371, 3380 |
| NciI | CCSGG | 2 cut(s) | 1668, 3036 |
| NdeI | CATATG | 2 cut(s) | 1601, 1977 |
| NlaIII | CATG | 9 cut(s) | 293, 383, 595, 710, 1067, 1187, 1479, 2232, 2368 |
| NlaIV | GGNNCC | 5 cut(s) | 168, 169, 769, 890, 2360 |
| NmeAIII | GCCGAG | 1 cut(s) | 1001 |
| NmuCI | GTSAC | 2 cut(s) | 2692, 3602 |
| NotI | GCGGCCGC | 1 cut(s) | 3562 |
| NsbI | TGCGCA | 1 cut(s) | 2949 |
| NspI | RCATGY | 2 cut(s) | 595, 1479 |
| NspV | TTCGAA | 1 cut(s) | 726 |
| PaeI | GCATGC | 1 cut(s) | 595 |
| PaeR7I | CTCGAG | 1 cut(s) | 1002 |
| PagI | TCATGA | 1 cut(s) | 1183 |
| PciSI | GCTCTTC | 1 cut(s) | 1124 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1009, 3138 |
| PctI | GAATGC | 3 cut(s) | 281, 1308, 2809 |
| PdmI | GAANNNNTTC | 5 cut(s) | 633, 1110, 1404, 1884, 2304 |
| PfoI | TCCNGGA | 2 cut(s) | 1666, 3034 |
| PleI | GAGTC | 5 cut(s) | 705, 1030, 1800, 2325, 2433 |
| PpsI | GAGTC | 5 cut(s) | 705, 1030, 1800, 2325, 2433 |
| Ppu21I | YACGTR | 1 cut(s) | 2675 |
| PpuMI | RGGWCCY | 2 cut(s) | 167, 1024 |
| PshBI | ATTAAT | 2 cut(s) | 2112, 3528 |
| PsiI | TTATAA | 2 cut(s) | 995, 1907 |
| Psp5II | RGGWCCY | 2 cut(s) | 167, 1024 |
| Psp6I | CCWGG | 2 cut(s) | 63, 2983 |
| PspGI | CCWGG | 2 cut(s) | 63, 2983 |
| PspN4I | GGNNCC | 5 cut(s) | 168, 169, 769, 890, 2360 |
| PspPI | GGNCC | 5 cut(s) | 167, 1024, 1358, 2987, 3111 |
| PspPPI | RGGWCCY | 2 cut(s) | 167, 1024 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2577 |
| PsuI | RGATCY | 4 cut(s) | 1074, 1663, 1873, 3077 |
| PvuII | CAGCTG | 1 cut(s) | 3063 |
| RsaI | GTAC | 8 cut(s) | 769, 862, 898, 1199, 1688, 1785, 2265, 3299 |
| RsaNI | GTAC | 8 cut(s) | 768, 861, 897, 1198, 1687, 1784, 2264, 3298 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1128, 1242, 1568, 1604, 3290 |
| SapI | GCTCTTC | 1 cut(s) | 1124 |
| Sau96I | GGNCC | 5 cut(s) | 167, 1024, 1358, 2987, 3111 |
| SchI | GAGTC | 5 cut(s) | 705, 1030, 1801, 2326, 2433 |
| ScrFI | CCNGG | 4 cut(s) | 65, 1668, 2985, 3036 |
| SduI | GDGCHC | 1 cut(s) | 2730 |
| SfcI | CTRYAG | 5 cut(s) | 648, 864, 1423, 1659, 3399 |
| Sfr274I | CTCGAG | 1 cut(s) | 1002 |
| SfuI | TTCGAA | 1 cut(s) | 726 |
| SinI | GGWCC | 4 cut(s) | 167, 1024, 1358, 3111 |
| SlaI | CTCGAG | 1 cut(s) | 1002 |
| SmiI | ATTTAAAT | 3 cut(s) | 1128, 1219, 2253 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1128, 1242, 1568, 1604, 3290 |
| SmlI | CTYRAG | 7 cut(s) | 1002, 1028, 1832, 2032, 2309, 2474, 2513 |
| SmoI | CTYRAG | 7 cut(s) | 1002, 1028, 1832, 2032, 2309, 2474, 2513 |
| SpeI | ACTAGT | 2 cut(s) | 1015, 1042 |
| SphI | GCATGC | 1 cut(s) | 595 |
| SspI | AATATT | 5 cut(s) | 1518, 2101, 2341, 2431, 3091 |
| SspMI | CTAG | 9 cut(s) | 830, 1016, 1043, 1917, 2267, 2594, 3441, 3552, 3582 |
| StyD4I | CCNGG | 4 cut(s) | 63, 1666, 2983, 3034 |
| StyI | CCWWGG | 3 cut(s) | 1982, 2354, 3050 |
| SwaI | ATTTAAAT | 3 cut(s) | 1128, 1219, 2253 |
| TaaI | ACNGT | 7 cut(s) | 737, 795, 1368, 1788, 2263, 2537, 2833 |
| TaiI | ACGT | 1 cut(s) | 2677 |
| TaqII | GACCGA | 1 cut(s) | 3353 |
| TatI | WGTACW | 3 cut(s) | 896, 1686, 2263 |
| TauI | GCSGC | 4 cut(s) | 591, 3365, 3564, 3567 |
| TscAI | CASTG | 3 cut(s) | 740, 2540, 3374 |
| TseFI | GTSAC | 2 cut(s) | 2692, 3602 |
| TseI | GCWGC | 7 cut(s) | 446, 1301, 1523, 2503, 2931, 2972, 3328 |
| Tsp45I | GTSAC | 2 cut(s) | 2692, 3602 |
| TspGWI | ACGGA | 3 cut(s) | 422, 1163, 1249 |
| TspRI | CASTG | 3 cut(s) | 740, 2540, 3374 |
| VpaK11BI | GGWCC | 4 cut(s) | 167, 1024, 1358, 3111 |
| VspI | ATTAAT | 2 cut(s) | 2112, 3528 |
| XbaI | TCTAGA | 1 cut(s) | 2593 |
| XceI | RCATGY | 2 cut(s) | 595, 1479 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1258 |
| XhoI | CTCGAG | 1 cut(s) | 1002 |
| XmnI | GAANNNNTTC | 5 cut(s) | 633, 1110, 1404, 1884, 2304 |
| XspI | CTAG | 9 cut(s) | 830, 1016, 1043, 1917, 2267, 2594, 3441, 3552, 3582 |