TIR domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 627 |
| AciI | CCGC | 1 cut(s) | 749 |
| AclWI | GGATC | 2 cut(s) | 451, 503 |
| AcsI | RAATTY | 4 cut(s) | 524, 543, 646, 869 |
| AcyI | GRCGYC | 1 cut(s) | 22 |
| AfaI | GTAC | 3 cut(s) | 235, 709, 828 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 478 |
| AgsI | TTSAA | 8 cut(s) | 154, 173, 194, 311, 406, 674, 679, 773 |
| AjnI | CCWGG | 2 cut(s) | 14, 556 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 510, 516, 542, 548 |
| AluBI | AGCT | 7 cut(s) | 29, 71, 228, 320, 581, 659, 767 |
| AluI | AGCT | 7 cut(s) | 29, 71, 228, 320, 581, 659, 767 |
| Alw26I | GTCTC | 1 cut(s) | 457 |
| AlwI | GGATC | 2 cut(s) | 451, 503 |
| ApeKI | GCWGC | 1 cut(s) | 41 |
| ApoI | RAATTY | 4 cut(s) | 524, 543, 646, 869 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 660 |
| AspS9I | GGNCC | 2 cut(s) | 251, 481 |
| AsuC2I | CCSGG | 1 cut(s) | 472 |
| AsuII | TTCGAA | 1 cut(s) | 315 |
| AvaII | GGWCC | 2 cut(s) | 251, 481 |
| BaeGI | GKGCMC | 1 cut(s) | 883 |
| BbvI | GCAGC | 1 cut(s) | 53 |
| BccI | CCATC | 2 cut(s) | 686, 730 |
| BceAI | ACGGC | 1 cut(s) | 608 |
| BciT130I | CCWGG | 2 cut(s) | 16, 558 |
| BciVI | GTATCC | 1 cut(s) | 360 |
| BclI | TGATCA | 1 cut(s) | 742 |
| BcnI | CCSGG | 1 cut(s) | 472 |
| BcoDI | GTCTC | 1 cut(s) | 457 |
| BfaI | CTAG | 4 cut(s) | 582, 687, 702, 779 |
| BfmI | CTRYAG | 1 cut(s) | 438 |
| BfuI | GTATCC | 1 cut(s) | 360 |
| BisI | GCNGC | 1 cut(s) | 42 |
| BlsI | GCNGC | 1 cut(s) | 43 |
| Bme1390I | CCNGG | 3 cut(s) | 16, 472, 558 |
| Bme18I | GGWCC | 2 cut(s) | 251, 481 |
| BmgT120I | GGNCC | 2 cut(s) | 251, 481 |
| BmiI | GGNNCC | 1 cut(s) | 252 |
| BmrFI | CCNGG | 3 cut(s) | 16, 472, 558 |
| BmsI | GCATC | 1 cut(s) | 274 |
| BoxI | GACNNNNGTC | 1 cut(s) | 479 |
| Bpu14I | TTCGAA | 1 cut(s) | 315 |
| BpuMI | CCSGG | 1 cut(s) | 472 |
| BsaHI | GRCGYC | 1 cut(s) | 22 |
| BsaJI | CCNNGG | 1 cut(s) | 556 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 478 |
| BseBI | CCWGG | 2 cut(s) | 16, 558 |
| BseDI | CCNNGG | 1 cut(s) | 556 |
| BseGI | GGATG | 1 cut(s) | 415 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 478 |
| BseSI | GKGCMC | 1 cut(s) | 883 |
| BseXI | GCAGC | 1 cut(s) | 53 |
| BseYI | CCCAGC | 1 cut(s) | 816 |
| BsiSI | CCGG | 1 cut(s) | 472 |
| BslFI | GGGAC | 1 cut(s) | 171 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 478 |
| BsmAI | GTCTC | 1 cut(s) | 457 |
| BsmFI | GGGAC | 1 cut(s) | 171 |
| BsmI | GAATGC | 2 cut(s) | 180, 685 |
| Bsp119I | TTCGAA | 1 cut(s) | 315 |
| Bsp1286I | GDGCHC | 1 cut(s) | 883 |
| Bsp143I | GATC | 5 cut(s) | 46, 434, 443, 508, 742 |
| BspACI | CCGC | 1 cut(s) | 749 |
| BspLI | GGNNCC | 1 cut(s) | 252 |
| BspPI | GGATC | 2 cut(s) | 451, 503 |
| BspQI | GCTCTTC | 4 cut(s) | 602, 666, 703, 774 |
| BspT104I | TTCGAA | 1 cut(s) | 315 |
| BssECI | CCNNGG | 1 cut(s) | 556 |
| BssMI | GATC | 5 cut(s) | 46, 434, 443, 508, 742 |
| BssNAI | GTATAC | 1 cut(s) | 628 |
| BssNI | GRCGYC | 1 cut(s) | 22 |
| Bst1107I | GTATAC | 1 cut(s) | 628 |
| Bst2UI | CCWGG | 2 cut(s) | 16, 558 |
| Bst4CI | ACNGT | 3 cut(s) | 131, 300, 800 |
| Bst6I | CTCTTC | 4 cut(s) | 602, 666, 703, 774 |
| BstACI | GRCGYC | 1 cut(s) | 22 |
| BstBI | TTCGAA | 1 cut(s) | 315 |
| BstC8I | GCNNGC | 1 cut(s) | 141 |
| BstDEI | CTNAG | 2 cut(s) | 419, 875 |
| BstF5I | GGATG | 1 cut(s) | 415 |
| BstKTI | GATC | 5 cut(s) | 49, 437, 446, 511, 745 |
| BstMAI | GTCTC | 1 cut(s) | 457 |
| BstMBI | GATC | 5 cut(s) | 46, 434, 443, 508, 742 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 41, 385, 813 |
| BstNI | CCWGG | 2 cut(s) | 16, 558 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 479 |
| BstSCI | CCNGG | 3 cut(s) | 14, 470, 556 |
| BstSFI | CTRYAG | 1 cut(s) | 438 |
| BstSLI | GKGCMC | 1 cut(s) | 883 |
| BstV1I | GCAGC | 1 cut(s) | 53 |
| BstZ17I | GTATAC | 1 cut(s) | 628 |
| BsuI | GTATCC | 1 cut(s) | 360 |
| BtsCI | GGATG | 1 cut(s) | 415 |
| BtsIMutI | CAGTG | 1 cut(s) | 796 |
| Cac8I | GCNNGC | 1 cut(s) | 141 |
| Cfr13I | GGNCC | 2 cut(s) | 251, 481 |
| CseI | GACGC | 1 cut(s) | 11 |
| Csp6I | GTAC | 3 cut(s) | 234, 708, 827 |
| CviAII | CATG | 3 cut(s) | 362, 746, 836 |
| CviQI | GTAC | 3 cut(s) | 234, 708, 827 |
| DdeI | CTNAG | 2 cut(s) | 419, 875 |
| DpnI | GATC | 5 cut(s) | 48, 436, 445, 510, 744 |
| DpnII | GATC | 5 cut(s) | 46, 434, 443, 508, 742 |
| Eam1104I | CTCTTC | 4 cut(s) | 602, 666, 703, 774 |
| EarI | CTCTTC | 4 cut(s) | 602, 666, 703, 774 |
| Eco47I | GGWCC | 2 cut(s) | 251, 481 |
| EcoO109I | RGGNCCY | 1 cut(s) | 481 |
| EcoRII | CCWGG | 2 cut(s) | 14, 556 |
| FaeI | CATG | 3 cut(s) | 365, 749, 839 |
| FaiI | YATR | 9 cut(s) | 239, 290, 292, 363, 440, 615, 628, 747, 837 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 813, 845 |
| FaqI | GGGAC | 1 cut(s) | 171 |
| FatI | CATG | 3 cut(s) | 361, 745, 835 |
| FbaI | TGATCA | 1 cut(s) | 742 |
| FblI | GTMKAC | 1 cut(s) | 627 |
| Fnu4HI | GCNGC | 1 cut(s) | 42 |
| FokI | GGATG | 1 cut(s) | 422 |
| Fsp4HI | GCNGC | 1 cut(s) | 42 |
| FspBI | CTAG | 4 cut(s) | 582, 687, 702, 779 |
| GluI | GCNGC | 1 cut(s) | 42 |
| GsaI | CCCAGC | 1 cut(s) | 820 |
| HapII | CCGG | 1 cut(s) | 472 |
| HgaI | GACGC | 1 cut(s) | 11 |
| Hin1I | GRCGYC | 1 cut(s) | 22 |
| Hin1II | CATG | 3 cut(s) | 365, 749, 839 |
| HindIII | AAGCTT | 2 cut(s) | 27, 318 |
| HinfI | GANTC | 4 cut(s) | 194, 350, 465, 567 |
| HpaII | CCGG | 1 cut(s) | 472 |
| Hpy166II | GTNNAC | 1 cut(s) | 628 |
| Hpy188III | TCNNGA | 6 cut(s) | 118, 395, 494, 601, 702, 729 |
| Hpy8I | GTNNAC | 1 cut(s) | 628 |
| HpyAV | CCTTC | 3 cut(s) | 148, 400, 746 |
| HpyCH4III | ACNGT | 3 cut(s) | 131, 300, 800 |
| HpyCH4V | TGCA | 3 cut(s) | 335, 613, 854 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 41, 385, 813 |
| HpyF3I | CTNAG | 2 cut(s) | 419, 875 |
| Hsp92I | GRCGYC | 1 cut(s) | 22 |
| Hsp92II | CATG | 3 cut(s) | 365, 749, 839 |
| Ksp22I | TGATCA | 1 cut(s) | 742 |
| Kzo9I | GATC | 5 cut(s) | 46, 434, 443, 508, 742 |
| LguI | GCTCTTC | 4 cut(s) | 602, 666, 703, 774 |
| LpnPI | CCDG | 9 cut(s) | 28, 35, 153, 231, 485, 543, 570, 802, 879 |
| Lsp1109I | GCAGC | 1 cut(s) | 53 |
| LweI | GCATC | 1 cut(s) | 274 |
| MaeI | CTAG | 4 cut(s) | 582, 687, 702, 779 |
| MaeIII | GTNAC | 2 cut(s) | 131, 800 |
| MalI | GATC | 5 cut(s) | 48, 436, 445, 510, 744 |
| MboI | GATC | 5 cut(s) | 46, 434, 443, 508, 742 |
| MboII | GAAGA | 8 cut(s) | 359, 383, 589, 653, 690, 761, 777, 833 |
| MfeI | CAATTG | 1 cut(s) | 674 |
| MhlI | GDGCHC | 1 cut(s) | 883 |
| MlyI | GAGTC | 1 cut(s) | 459 |
| MnlI | CCTC | 5 cut(s) | 76, 251, 287, 494, 625 |
| MroXI | GAANNNNTTC | 1 cut(s) | 660 |
| MseI | TTAA | 3 cut(s) | 456, 644, 889 |
| MslI | CAYNNNNRTG | 1 cut(s) | 840 |
| MspI | CCGG | 1 cut(s) | 472 |
| MspR9I | CCNGG | 3 cut(s) | 16, 472, 558 |
| MunI | CAATTG | 1 cut(s) | 674 |
| Mva1269I | GAATGC | 2 cut(s) | 180, 685 |
| MvaI | CCWGG | 2 cut(s) | 16, 558 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 41, 385, 813 |
| NciI | CCSGG | 1 cut(s) | 472 |
| NdeII | GATC | 5 cut(s) | 46, 434, 443, 508, 742 |
| NlaIII | CATG | 3 cut(s) | 365, 749, 839 |
| NlaIV | GGNNCC | 1 cut(s) | 252 |
| NmuCI | GTSAC | 1 cut(s) | 800 |
| NspV | TTCGAA | 1 cut(s) | 315 |
| PciSI | GCTCTTC | 4 cut(s) | 602, 666, 703, 774 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 114 |
| PctI | GAATGC | 2 cut(s) | 180, 685 |
| PdmI | GAANNNNTTC | 1 cut(s) | 660 |
| PfeI | GAWTC | 3 cut(s) | 194, 350, 567 |
| PfoI | TCCNGGA | 1 cut(s) | 470 |
| PkrI | GCNGC | 1 cut(s) | 43 |
| PleI | GAGTC | 1 cut(s) | 459 |
| PpsI | GAGTC | 1 cut(s) | 459 |
| PpuMI | RGGWCCY | 1 cut(s) | 481 |
| PshAI | GACNNNNGTC | 1 cut(s) | 479 |
| Psp5II | RGGWCCY | 1 cut(s) | 481 |
| Psp6I | CCWGG | 2 cut(s) | 14, 556 |
| PspFI | CCCAGC | 1 cut(s) | 816 |
| PspGI | CCWGG | 2 cut(s) | 14, 556 |
| PspN4I | GGNNCC | 1 cut(s) | 252 |
| PspPI | GGNCC | 2 cut(s) | 251, 481 |
| PspPPI | RGGWCCY | 1 cut(s) | 481 |
| RsaI | GTAC | 3 cut(s) | 235, 709, 828 |
| RsaNI | GTAC | 3 cut(s) | 234, 708, 827 |
| RseI | CAYNNNNRTG | 1 cut(s) | 840 |
| SapI | GCTCTTC | 4 cut(s) | 602, 666, 703, 774 |
| SaqAI | TTAA | 3 cut(s) | 456, 644, 889 |
| SatI | GCNGC | 1 cut(s) | 42 |
| Sau3AI | GATC | 5 cut(s) | 46, 434, 443, 508, 742 |
| Sau96I | GGNCC | 2 cut(s) | 251, 481 |
| SchI | GAGTC | 1 cut(s) | 459 |
| ScrFI | CCNGG | 3 cut(s) | 16, 472, 558 |
| SduI | GDGCHC | 1 cut(s) | 883 |
| SfaNI | GCATC | 1 cut(s) | 274 |
| SfcI | CTRYAG | 1 cut(s) | 438 |
| SfuI | TTCGAA | 1 cut(s) | 315 |
| SinI | GGWCC | 2 cut(s) | 251, 481 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 840 |
| SsiI | CCGC | 1 cut(s) | 749 |
| SspMI | CTAG | 4 cut(s) | 582, 687, 702, 779 |
| StyD4I | CCNGG | 3 cut(s) | 14, 470, 556 |
| TaaI | ACNGT | 3 cut(s) | 131, 300, 800 |
| TaqI | TCGA | 5 cut(s) | 108, 315, 433, 600, 728 |
| TatI | WGTACW | 2 cut(s) | 707, 826 |
| TfiI | GAWTC | 3 cut(s) | 194, 350, 567 |
| Tru1I | TTAA | 3 cut(s) | 456, 644, 889 |
| Tru9I | TTAA | 3 cut(s) | 456, 644, 889 |
| TscAI | CASTG | 1 cut(s) | 803 |
| TseFI | GTSAC | 1 cut(s) | 800 |
| TseI | GCWGC | 1 cut(s) | 41 |
| Tsp45I | GTSAC | 1 cut(s) | 800 |
| TspDTI | ATGAA | 6 cut(s) | 426, 536, 555, 777, 781, 858 |
| TspGWI | ACGGA | 1 cut(s) | 293 |
| TspRI | CASTG | 1 cut(s) | 803 |
| VpaK11BI | GGWCC | 2 cut(s) | 251, 481 |
| XapI | RAATTY | 4 cut(s) | 524, 543, 646, 869 |
| XbaI | TCTAGA | 1 cut(s) | 701 |
| XmiI | GTMKAC | 1 cut(s) | 627 |
| XmnI | GAANNNNTTC | 1 cut(s) | 660 |
| XspI | CTAG | 4 cut(s) | 582, 687, 702, 779 |