Disease resistance protein (TIR-NBS-LRR class)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 540, 1172 |
| Acc16I | TGCGCA | 1 cut(s) | 474 |
| Acc36I | ACCTGC | 2 cut(s) | 2309, 3023 |
| Acc65I | GGTACC | 1 cut(s) | 944 |
| AccB1I | GGYRCC | 2 cut(s) | 592, 944 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1690 |
| AccBSI | CCGCTC | 1 cut(s) | 3163 |
| AccI | GTMKAC | 2 cut(s) | 1479, 3779 |
| AccIII | TCCGGA | 3 cut(s) | 1603, 2197, 2755 |
| AciI | CCGC | 9 cut(s) | 105, 351, 623, 766, 1069, 1593, 3060, 3163, 3521 |
| AclWI | GGATC | 8 cut(s) | 500, 1675, 1844, 1857, 2099, 2645, 3282, 3502 |
| AcoI | YGGCCR | 4 cut(s) | 127, 147, 624, 3871 |
| AcuI | CTGAAG | 6 cut(s) | 1265, 1454, 1875, 2142, 2322, 3364 |
| AcvI | CACGTG | 1 cut(s) | 3727 |
| AdeI | CACNNNGTG | 3 cut(s) | 426, 1678, 2985 |
| AfaI | GTAC | 6 cut(s) | 519, 946, 1143, 1806, 2217, 2401 |
| AfeI | AGCGCT | 1 cut(s) | 3981 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 79, 129, 1610, 1690, 2762 |
| AflII | CTTAAG | 3 cut(s) | 1879, 2045, 2852 |
| AflIII | ACRYGT | 4 cut(s) | 478, 514, 3418, 3726 |
| AjiI | CACGTC | 2 cut(s) | 1102, 4114 |
| AjnI | CCWGG | 4 cut(s) | 243, 1153, 2033, 2115 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 767, 799, 941, 973, 1131, 1163 |
| AleI | CACNNNNGTG | 1 cut(s) | 1755 |
| Alw21I | GWGCWC | 3 cut(s) | 2990, 3186, 4058 |
| AlwI | GGATC | 8 cut(s) | 500, 1675, 1844, 1857, 2099, 2645, 3282, 3502 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3015 |
| Ama87I | CYCGRG | 2 cut(s) | 1179, 2924 |
| Aor13HI | TCCGGA | 3 cut(s) | 1603, 2197, 2755 |
| Aor51HI | AGCGCT | 1 cut(s) | 3981 |
| AoxI | GGCC | 8 cut(s) | 127, 147, 241, 624, 763, 1150, 2065, 3871 |
| ApeKI | GCWGC | 5 cut(s) | 102, 281, 1355, 1586, 2821 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3253, 3285 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 810, 1278, 3903 |
| Asp718I | GGTACC | 1 cut(s) | 944 |
| AspA2I | CCTAGG | 1 cut(s) | 2239 |
| AspLEI | GCGC | 3 cut(s) | 475, 1740, 3982 |
| AspS9I | GGNCC | 5 cut(s) | 70, 347, 1151, 2523, 3303 |
| AsuC2I | CCSGG | 2 cut(s) | 1731, 3453 |
| AsuHPI | GGTGA | 6 cut(s) | 94, 3650, 3938, 3973, 4084, 4105 |
| AsuII | TTCGAA | 1 cut(s) | 903 |
| AvaI | CYCGRG | 2 cut(s) | 1179, 2924 |
| AvaII | GGWCC | 4 cut(s) | 70, 347, 2523, 3303 |
| AvrII | CCTAGG | 1 cut(s) | 2239 |
| BaeGI | GKGCMC | 2 cut(s) | 597, 2610 |
| BalI | TGGCCA | 1 cut(s) | 3873 |
| BamHI | GGATCC | 1 cut(s) | 1849 |
| BanI | GGYRCC | 2 cut(s) | 592, 944 |
| BanII | GRGCYC | 1 cut(s) | 3135 |
| BbrPI | CACGTG | 1 cut(s) | 3727 |
| BbsI | GAAGAC | 1 cut(s) | 3185 |
| Bbv12I | GWGCWC | 3 cut(s) | 2990, 3186, 4058 |
| BbvCI | CCTCAGC | 1 cut(s) | 213 |
| BbvI | GCAGC | 5 cut(s) | 89, 268, 1342, 1573, 2808 |
| BccI | CCATC | 8 cut(s) | 73, 279, 1490, 1604, 1999, 2419, 3122, 3610 |
| BceAI | ACGGC | 3 cut(s) | 152, 1056, 3726 |
| BciT130I | CCWGG | 4 cut(s) | 245, 1155, 2035, 2117 |
| BciVI | GTATCC | 1 cut(s) | 241 |
| BclI | TGATCA | 1 cut(s) | 390 |
| BcnI | CCSGG | 2 cut(s) | 1731, 3453 |
| BfaI | CTAG | 7 cut(s) | 185, 1007, 1208, 1928, 2240, 2739, 3002 |
| BfmI | CTRYAG | 4 cut(s) | 1041, 1356, 2518, 3016 |
| BfoI | RGCGCY | 1 cut(s) | 3983 |
| BfrI | CTTAAG | 3 cut(s) | 1879, 2045, 2852 |
| BfuAI | ACCTGC | 2 cut(s) | 2309, 3023 |
| BfuI | GTATCC | 1 cut(s) | 241 |
| BglII | AGATCT | 3 cut(s) | 1883, 2863, 3076 |
| BisI | GCNGC | 8 cut(s) | 103, 282, 624, 766, 1356, 1587, 2822, 3164 |
| BlnI | CCTAGG | 1 cut(s) | 2239 |
| BlsI | GCNGC | 8 cut(s) | 104, 283, 625, 767, 1357, 1588, 2823, 3165 |
| BmcAI | AGTACT | 1 cut(s) | 2401 |
| Bme1390I | CCNGG | 6 cut(s) | 245, 1155, 1731, 2035, 2117, 3453 |
| Bme18I | GGWCC | 4 cut(s) | 70, 347, 2523, 3303 |
| BmeT110I | CYCGRG | 2 cut(s) | 1179, 2924 |
| BmgBI | CACGTC | 2 cut(s) | 1102, 4114 |
| BmgT120I | GGNCC | 5 cut(s) | 70, 347, 1151, 2523, 3303 |
| BmiI | GGNNCC | 6 cut(s) | 349, 594, 946, 1067, 1851, 2769 |
| BmrFI | CCNGG | 6 cut(s) | 245, 1155, 1731, 2035, 2117, 3453 |
| BmrI | ACTGGG | 2 cut(s) | 2000, 2643 |
| BmsI | GCATC | 6 cut(s) | 862, 1558, 1659, 1860, 3361, 3874 |
| BmuI | ACTGGG | 2 cut(s) | 2000, 2643 |
| BpiI | GAAGAC | 1 cut(s) | 3185 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2918, 2950 |
| BpmI | CTGGAG | 3 cut(s) | 2056, 2696, 4042 |
| Bpu10I | CCTNAGC | 1 cut(s) | 213 |
| Bpu14I | TTCGAA | 1 cut(s) | 903 |
| BpuEI | CTTGAG | 4 cut(s) | 347, 3119, 3251, 3620 |
| BpuMI | CCSGG | 2 cut(s) | 1731, 3453 |
| Bsa29I | ATCGAT | 1 cut(s) | 2094 |
| BsaAI | YACGTR | 2 cut(s) | 2939, 3727 |
| BsaI | GGTCTC | 1 cut(s) | 2487 |
| BsaJI | CCNNGG | 6 cut(s) | 1153, 2033, 2239, 2549, 3751, 3868 |
| BsaWI | WCCGGW | 4 cut(s) | 10, 1603, 2197, 2755 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 327, 357, 3091, 3121 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 79, 129, 1610, 1690, 2762 |
| Bse118I | RCCGGY | 2 cut(s) | 129, 149 |
| Bse1I | ACTGG | 7 cut(s) | 92, 123, 748, 1841, 2006, 2638, 3179 |
| Bse3DI | GCAATG | 3 cut(s) | 1402, 2512, 3062 |
| BseAI | TCCGGA | 3 cut(s) | 1603, 2197, 2755 |
| BseBI | CCWGG | 4 cut(s) | 245, 1155, 2035, 2117 |
| BseCI | ATCGAT | 1 cut(s) | 2094 |
| BseDI | CCNNGG | 6 cut(s) | 1153, 2033, 2239, 2549, 3751, 3868 |
| BseGI | GGATG | 9 cut(s) | 439, 798, 1612, 1674, 1768, 1875, 3373, 3621, 3706 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 79, 129, 1610, 1690, 2762 |
| BseMI | GCAATG | 3 cut(s) | 1402, 2512, 3062 |
| BseMII | CTCAG | 6 cut(s) | 204, 1878, 2067, 2645, 3134, 3974 |
| BseNI | ACTGG | 7 cut(s) | 92, 123, 748, 1841, 2006, 2638, 3179 |
| BseSI | GKGCMC | 2 cut(s) | 597, 2610 |
| BseXI | GCAGC | 5 cut(s) | 89, 268, 1342, 1573, 2808 |
| BsgI | GTGCAG | 3 cut(s) | 1068, 2337, 2860 |
| Bsh1285I | CGRYCG | 1 cut(s) | 941 |
| BshFI | GGCC | 8 cut(s) | 129, 149, 243, 626, 765, 1152, 2067, 3873 |
| BshNI | GGYRCC | 2 cut(s) | 592, 944 |
| BshVI | ATCGAT | 1 cut(s) | 2094 |
| BsiEI | CGRYCG | 1 cut(s) | 941 |
| BsiHKAI | GWGCWC | 3 cut(s) | 2990, 3186, 4058 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1179, 2924 |
| BsiSI | CCGG | 8 cut(s) | 11, 130, 150, 1604, 1730, 2198, 2756, 3452 |
| BslFI | GGGAC | 4 cut(s) | 1025, 2818, 3709, 4124 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 79, 129, 1610, 1690, 2762 |
| BsmFI | GGGAC | 4 cut(s) | 1025, 2818, 3709, 4124 |
| BsmI | GAATGC | 3 cut(s) | 548, 3214, 3575 |
| BsnI | GGCC | 8 cut(s) | 129, 149, 243, 626, 765, 1152, 2067, 3873 |
| Bso31I | GGTCTC | 1 cut(s) | 2487 |
| BsoBI | CYCGRG | 2 cut(s) | 1179, 2924 |
| Bsp119I | TTCGAA | 1 cut(s) | 903 |
| Bsp1286I | GDGCHC | 6 cut(s) | 597, 2610, 2990, 3135, 3186, 4058 |
| Bsp13I | TCCGGA | 3 cut(s) | 1603, 2197, 2755 |
| Bsp1407I | TGTACA | 1 cut(s) | 2215 |
| Bsp19I | CCATGG | 3 cut(s) | 2549, 3751, 3868 |
| BspACI | CCGC | 9 cut(s) | 105, 351, 623, 766, 1069, 1593, 3060, 3163, 3521 |
| BspANI | GGCC | 8 cut(s) | 129, 149, 243, 626, 765, 1152, 2067, 3873 |
| BspCNI | CTCAG | 6 cut(s) | 205, 1877, 2068, 2646, 3135, 3975 |
| BspDI | ATCGAT | 1 cut(s) | 2094 |
| BspEI | TCCGGA | 3 cut(s) | 1603, 2197, 2755 |
| BspLI | GGNNCC | 6 cut(s) | 349, 594, 946, 1067, 1851, 2769 |
| BspMAI | CTGCAG | 2 cut(s) | 1360, 3020 |
| BspMI | ACCTGC | 2 cut(s) | 2309, 3023 |
| BspPI | GGATC | 8 cut(s) | 500, 1675, 1844, 1857, 2099, 2645, 3282, 3502 |
| BspQI | GCTCTTC | 1 cut(s) | 1292 |
| BspT104I | TTCGAA | 1 cut(s) | 903 |
| BspT107I | GGYRCC | 2 cut(s) | 592, 944 |
| BspTI | CTTAAG | 3 cut(s) | 1879, 2045, 2852 |
| BspTNI | GGTCTC | 1 cut(s) | 2487 |
| BsrBI | CCGCTC | 1 cut(s) | 3163 |
| BsrDI | GCAATG | 3 cut(s) | 1402, 2512, 3062 |
| BsrFI | RCCGGY | 2 cut(s) | 129, 149 |
| BsrGI | TGTACA | 1 cut(s) | 2215 |
| BsrI | ACTGG | 7 cut(s) | 92, 123, 748, 1841, 2006, 2638, 3179 |
| BssAI | RCCGGY | 2 cut(s) | 129, 149 |
| BssECI | CCNNGG | 6 cut(s) | 1153, 2033, 2239, 2549, 3751, 3868 |
| BssNAI | GTATAC | 1 cut(s) | 1480 |
| BssT1I | CCWWGG | 4 cut(s) | 2239, 2549, 3751, 3868 |
| Bst1107I | GTATAC | 1 cut(s) | 1480 |
| Bst2UI | CCWGG | 4 cut(s) | 245, 1155, 2035, 2117 |
| Bst4CI | ACNGT | 9 cut(s) | 661, 914, 972, 1395, 1477, 2605, 3238, 3748, 3825 |
| Bst6I | CTCTTC | 3 cut(s) | 898, 1284, 1292 |
| BstAFI | CTTAAG | 3 cut(s) | 1879, 2045, 2852 |
| BstAUI | TGTACA | 1 cut(s) | 2215 |
| BstBAI | YACGTR | 2 cut(s) | 2939, 3727 |
| BstBI | TTCGAA | 1 cut(s) | 903 |
| BstC8I | GCNNGC | 3 cut(s) | 1540, 1591, 3161 |
| BstDSI | CCRYGG | 3 cut(s) | 2549, 3751, 3868 |
| BstF5I | GGATG | 9 cut(s) | 439, 798, 1612, 1674, 1768, 1875, 3373, 3621, 3706 |
| BstH2I | RGCGCY | 1 cut(s) | 3983 |
| BstHHI | GCGC | 3 cut(s) | 475, 1740, 3982 |
| BstMCI | CGRYCG | 1 cut(s) | 941 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1818, 2029, 3051, 3520 |
| BstNI | CCWGG | 4 cut(s) | 245, 1155, 2035, 2117 |
| BstNSI | RCATGY | 4 cut(s) | 473, 482, 518, 1542 |
| BstSCI | CCNGG | 6 cut(s) | 243, 1153, 1729, 2033, 2115, 3451 |
| BstSFI | CTRYAG | 4 cut(s) | 1041, 1356, 2518, 3016 |
| BstSLI | GKGCMC | 2 cut(s) | 597, 2610 |
| BstV1I | GCAGC | 5 cut(s) | 89, 268, 1342, 1573, 2808 |
| BstV2I | GAAGAC | 1 cut(s) | 3185 |
| BstX2I | RGATCY | 6 cut(s) | 505, 1849, 1883, 2863, 3076, 3494 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2116 |
| BstYI | RGATCY | 6 cut(s) | 505, 1849, 1883, 2863, 3076, 3494 |
| BstZ17I | GTATAC | 1 cut(s) | 1480 |
| Bsu15I | ATCGAT | 1 cut(s) | 2094 |
| BsuI | GTATCC | 1 cut(s) | 241 |
| BsuRI | GGCC | 8 cut(s) | 129, 149, 243, 626, 765, 1152, 2067, 3873 |
| BsuTUI | ATCGAT | 1 cut(s) | 2094 |
| BtgI | CCRYGG | 3 cut(s) | 2549, 3751, 3868 |
| BtrI | CACGTC | 2 cut(s) | 1102, 4114 |
| BtsCI | GGATG | 9 cut(s) | 439, 798, 1612, 1674, 1768, 1875, 3373, 3621, 3706 |
| BtsIMutI | CAGTG | 7 cut(s) | 130, 910, 1391, 2610, 3186, 3255, 3586 |
| BveI | ACCTGC | 2 cut(s) | 2309, 3023 |
| Cac8I | GCNNGC | 3 cut(s) | 1540, 1591, 3161 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3015 |
| CfoI | GCGC | 3 cut(s) | 475, 1740, 3982 |
| Cfr10I | RCCGGY | 2 cut(s) | 129, 149 |
| Cfr13I | GGNCC | 5 cut(s) | 70, 347, 1151, 2523, 3303 |
| ClaI | ATCGAT | 1 cut(s) | 2094 |
| Csp6I | GTAC | 6 cut(s) | 518, 945, 1142, 1805, 2216, 2400 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 189, 224 |
| CviQI | GTAC | 6 cut(s) | 518, 945, 1142, 1805, 2216, 2400 |
| DraI | TTTAAA | 1 cut(s) | 1296 |
| DraIII | CACNNNGTG | 3 cut(s) | 426, 1678, 2985 |
| EaeI | YGGCCR | 4 cut(s) | 127, 147, 624, 3871 |
| Eam1104I | CTCTTC | 3 cut(s) | 898, 1284, 1292 |
| EarI | CTCTTC | 3 cut(s) | 898, 1284, 1292 |
| EciI | GGCGGA | 1 cut(s) | 1058 |
| Eco130I | CCWWGG | 4 cut(s) | 2239, 2549, 3751, 3868 |
| Eco24I | GRGCYC | 1 cut(s) | 3135 |
| Eco31I | GGTCTC | 1 cut(s) | 2487 |
| Eco32I | GATATC | 2 cut(s) | 1534, 2999 |
| Eco47I | GGWCC | 4 cut(s) | 70, 347, 2523, 3303 |
| Eco47III | AGCGCT | 1 cut(s) | 3981 |
| Eco57I | CTGAAG | 6 cut(s) | 1265, 1454, 1875, 2142, 2322, 3364 |
| Eco72I | CACGTG | 1 cut(s) | 3727 |
| Eco88I | CYCGRG | 2 cut(s) | 1179, 2924 |
| EcoRI | GAATTC | 2 cut(s) | 1362, 2429 |
| EcoRII | CCWGG | 4 cut(s) | 243, 1153, 2033, 2115 |
| EcoRV | GATATC | 2 cut(s) | 1534, 2999 |
| EcoT14I | CCWWGG | 4 cut(s) | 2239, 2549, 3751, 3868 |
| EcoT22I | ATGCAT | 1 cut(s) | 1875 |
| EcoT38I | GRGCYC | 1 cut(s) | 3135 |
| ErhI | CCWWGG | 4 cut(s) | 2239, 2549, 3751, 3868 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3990, 4022 |
| FaqI | GGGAC | 4 cut(s) | 1025, 2818, 3709, 4124 |
| FauI | CCCGC | 3 cut(s) | 98, 358, 3067 |
| FauNDI | CATATG | 2 cut(s) | 1664, 2028 |
| FbaI | TGATCA | 1 cut(s) | 390 |
| FblI | GTMKAC | 2 cut(s) | 1479, 3779 |
| Fnu4HI | GCNGC | 8 cut(s) | 103, 282, 624, 766, 1356, 1587, 2822, 3164 |
| FokI | GGATG | 9 cut(s) | 446, 785, 1619, 1681, 1775, 1882, 3380, 3628, 3713 |
| FriOI | GRGCYC | 1 cut(s) | 3135 |
| Fsp4HI | GCNGC | 8 cut(s) | 103, 282, 624, 766, 1356, 1587, 2822, 3164 |
| FspBI | CTAG | 7 cut(s) | 185, 1007, 1208, 1928, 2240, 2739, 3002 |
| FspI | TGCGCA | 1 cut(s) | 474 |
| GlaI | GCGC | 3 cut(s) | 474, 1739, 3981 |
| GluI | GCNGC | 8 cut(s) | 103, 282, 624, 766, 1356, 1587, 2822, 3164 |
| GsuI | CTGGAG | 3 cut(s) | 2056, 2696, 4042 |
| HaeII | RGCGCY | 1 cut(s) | 3983 |
| HaeIII | GGCC | 8 cut(s) | 129, 149, 243, 626, 765, 1152, 2067, 3873 |
| HapII | CCGG | 8 cut(s) | 11, 130, 150, 1604, 1730, 2198, 2756, 3452 |
| HhaI | GCGC | 3 cut(s) | 475, 1740, 3982 |
| Hin6I | GCGC | 3 cut(s) | 473, 1738, 3980 |
| HinP1I | GCGC | 3 cut(s) | 473, 1738, 3980 |
| HincII | GTYRAC | 1 cut(s) | 1054 |
| HindII | GTYRAC | 1 cut(s) | 1054 |
| HindIII | AAGCTT | 3 cut(s) | 609, 1857, 3512 |
| HpaII | CCGG | 8 cut(s) | 11, 130, 150, 1604, 1730, 2198, 2756, 3452 |
| HphI | GGTGA | 6 cut(s) | 94, 3650, 3938, 3973, 4084, 4105 |
| Hpy99I | CGWCG | 2 cut(s) | 1103, 3712 |
| HpyCH4III | ACNGT | 9 cut(s) | 661, 914, 972, 1395, 1477, 2605, 3238, 3748, 3825 |
| HpyCH4IV | ACGT | 7 cut(s) | 1101, 1221, 2938, 3418, 3726, 3834, 4113 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1818, 2029, 3051, 3520 |
| HpySE526I | ACGT | 7 cut(s) | 1101, 1221, 2938, 3418, 3726, 3834, 4113 |
| HspAI | GCGC | 3 cut(s) | 473, 1738, 3980 |
| Kpn2I | TCCGGA | 3 cut(s) | 1603, 2197, 2755 |
| KpnI | GGTACC | 1 cut(s) | 948 |
| Ksp22I | TGATCA | 1 cut(s) | 390 |
| LguI | GCTCTTC | 1 cut(s) | 1292 |
| Lsp1109I | GCAGC | 5 cut(s) | 89, 268, 1342, 1573, 2808 |
| LweI | GCATC | 6 cut(s) | 862, 1558, 1659, 1860, 3361, 3874 |
| MaeI | CTAG | 7 cut(s) | 185, 1007, 1208, 1928, 2240, 2739, 3002 |
| MaeII | ACGT | 7 cut(s) | 1101, 1221, 2938, 3418, 3726, 3834, 4113 |
| MaeIII | GTNAC | 2 cut(s) | 1970, 2102 |
| MbiI | CCGCTC | 1 cut(s) | 3163 |
| MfeI | CAATTG | 3 cut(s) | 1753, 2832, 3586 |
| MflI | RGATCY | 6 cut(s) | 505, 1849, 1883, 2863, 3076, 3494 |
| MhlI | GDGCHC | 6 cut(s) | 597, 2610, 2990, 3135, 3186, 4058 |
| MlsI | TGGCCA | 1 cut(s) | 3873 |
| MluNI | TGGCCA | 1 cut(s) | 3873 |
| MlyI | GAGTC | 1 cut(s) | 882 |
| MmeI | TCCRAC | 4 cut(s) | 325, 1114, 1827, 2107 |
| Mox20I | TGGCCA | 1 cut(s) | 3873 |
| Mph1103I | ATGCAT | 1 cut(s) | 1875 |
| MroI | TCCGGA | 3 cut(s) | 1603, 2197, 2755 |
| MroXI | GAANNNNTTC | 3 cut(s) | 810, 1278, 3903 |
| MscI | TGGCCA | 1 cut(s) | 3873 |
| MslI | CAYNNNNRTG | 7 cut(s) | 276, 1296, 1631, 1667, 1755, 2623, 2627 |
| Msp20I | TGGCCA | 1 cut(s) | 3873 |
| MspA1I | CMGCKG | 1 cut(s) | 2821 |
| MspCI | CTTAAG | 3 cut(s) | 1879, 2045, 2852 |
| MspI | CCGG | 8 cut(s) | 11, 130, 150, 1604, 1730, 2198, 2756, 3452 |
| MspR9I | CCNGG | 6 cut(s) | 245, 1155, 1731, 2035, 2117, 3453 |
| MunI | CAATTG | 3 cut(s) | 1753, 2832, 3586 |
| Mva1269I | GAATGC | 3 cut(s) | 548, 3214, 3575 |
| MvaI | CCWGG | 4 cut(s) | 245, 1155, 2035, 2117 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1818, 2029, 3051, 3520 |
| NciI | CCSGG | 2 cut(s) | 1731, 3453 |
| NcoI | CCATGG | 3 cut(s) | 2549, 3751, 3868 |
| NdeI | CATATG | 2 cut(s) | 1664, 2028 |
| NlaIV | GGNNCC | 6 cut(s) | 349, 594, 946, 1067, 1851, 2769 |
| NsbI | TGCGCA | 1 cut(s) | 474 |
| NsiI | ATGCAT | 1 cut(s) | 1875 |
| NspI | RCATGY | 4 cut(s) | 473, 482, 518, 1542 |
| NspV | TTCGAA | 1 cut(s) | 903 |
| OliI | CACNNNNGTG | 1 cut(s) | 1755 |
| PaeI | GCATGC | 1 cut(s) | 1542 |
| PaeR7I | CTCGAG | 2 cut(s) | 1179, 2924 |
| PciI | ACATGT | 2 cut(s) | 478, 514 |
| PciSI | GCTCTTC | 1 cut(s) | 1292 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3704 |
| PctI | GAATGC | 3 cut(s) | 548, 3214, 3575 |
| PdmI | GAANNNNTTC | 3 cut(s) | 810, 1278, 3903 |
| PflFI | GACNNNGTC | 1 cut(s) | 3238 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1690 |
| PfoI | TCCNGGA | 2 cut(s) | 1729, 3451 |
| PkrI | GCNGC | 8 cut(s) | 104, 283, 625, 767, 1357, 1588, 2823, 3165 |
| Ple19I | CGATCG | 1 cut(s) | 941 |
| PleI | GAGTC | 1 cut(s) | 882 |
| PmaCI | CACGTG | 1 cut(s) | 3727 |
| PmlI | CACGTG | 1 cut(s) | 3727 |
| PpsI | GAGTC | 1 cut(s) | 882 |
| Ppu21I | YACGTR | 2 cut(s) | 2939, 3727 |
| PscI | ACATGT | 2 cut(s) | 478, 514 |
| PsiI | TTATAA | 2 cut(s) | 540, 1172 |
| Psp6I | CCWGG | 4 cut(s) | 243, 1153, 2033, 2115 |
| PspCI | CACGTG | 1 cut(s) | 3727 |
| PspGI | CCWGG | 4 cut(s) | 243, 1153, 2033, 2115 |
| PspN4I | GGNNCC | 6 cut(s) | 349, 594, 946, 1067, 1851, 2769 |
| PspPI | GGNCC | 5 cut(s) | 70, 347, 1151, 2523, 3303 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2241, 2273 |
| PstI | CTGCAG | 2 cut(s) | 1360, 3020 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3015 |
| PsuI | RGATCY | 6 cut(s) | 505, 1849, 1883, 2863, 3076, 3494 |
| PsyI | GACNNNGTC | 1 cut(s) | 3238 |
| PvuI | CGATCG | 1 cut(s) | 941 |
| PvuII | CAGCTG | 1 cut(s) | 2821 |
| RsaI | GTAC | 6 cut(s) | 519, 946, 1143, 1806, 2217, 2401 |
| RsaNI | GTAC | 6 cut(s) | 518, 945, 1142, 1805, 2216, 2400 |
| RseI | CAYNNNNRTG | 7 cut(s) | 276, 1296, 1631, 1667, 1755, 2623, 2627 |
| SapI | GCTCTTC | 1 cut(s) | 1292 |
| SatI | GCNGC | 8 cut(s) | 103, 282, 624, 766, 1356, 1587, 2822, 3164 |
| Sau96I | GGNCC | 5 cut(s) | 70, 347, 1151, 2523, 3303 |
| ScaI | AGTACT | 1 cut(s) | 2401 |
| SchI | GAGTC | 1 cut(s) | 882 |
| ScrFI | CCNGG | 6 cut(s) | 245, 1155, 1731, 2035, 2117, 3453 |
| SduI | GDGCHC | 6 cut(s) | 597, 2610, 2990, 3135, 3186, 4058 |
| SfaNI | GCATC | 6 cut(s) | 862, 1558, 1659, 1860, 3361, 3874 |
| SfcI | CTRYAG | 4 cut(s) | 1041, 1356, 2518, 3016 |
| Sfr274I | CTCGAG | 2 cut(s) | 1179, 2924 |
| SfuI | TTCGAA | 1 cut(s) | 903 |
| SinI | GGWCC | 4 cut(s) | 70, 347, 2523, 3303 |
| SlaI | CTCGAG | 2 cut(s) | 1179, 2924 |
| SmiI | ATTTAAAT | 1 cut(s) | 1296 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 276, 1296, 1631, 1667, 1755, 2623, 2627 |
| SmlI | CTYRAG | 9 cut(s) | 326, 1179, 1879, 2045, 2852, 2924, 3134, 3230, 3599 |
| SmoI | CTYRAG | 9 cut(s) | 326, 1179, 1879, 2045, 2852, 2924, 3134, 3230, 3599 |
| SphI | GCATGC | 1 cut(s) | 1542 |
| SsiI | CCGC | 9 cut(s) | 105, 351, 623, 766, 1069, 1593, 3060, 3163, 3521 |
| SspI | AATATT | 2 cut(s) | 97, 2964 |
| SspMI | CTAG | 7 cut(s) | 185, 1007, 1208, 1928, 2240, 2739, 3002 |
| StyD4I | CCNGG | 6 cut(s) | 243, 1153, 1729, 2033, 2115, 3451 |
| StyI | CCWWGG | 4 cut(s) | 2239, 2549, 3751, 3868 |
| SwaI | ATTTAAAT | 1 cut(s) | 1296 |
| TaaI | ACNGT | 9 cut(s) | 661, 914, 972, 1395, 1477, 2605, 3238, 3748, 3825 |
| TaiI | ACGT | 7 cut(s) | 1104, 1224, 2941, 3421, 3729, 3837, 4116 |
| TaqI | TCGA | 8 cut(s) | 191, 903, 1036, 1180, 2094, 2540, 2925, 4067 |
| TaqII | GACCGA | 1 cut(s) | 3320 |
| TatI | WGTACW | 2 cut(s) | 2215, 2399 |
| TauI | GCSGC | 3 cut(s) | 626, 768, 3166 |
| TscAI | CASTG | 7 cut(s) | 130, 917, 1398, 2610, 3186, 3255, 3586 |
| TseI | GCWGC | 5 cut(s) | 102, 281, 1355, 1586, 2821 |
| TspGWI | ACGGA | 8 cut(s) | 376, 580, 900, 1356, 1697, 3503, 3713, 3797 |
| TspRI | CASTG | 7 cut(s) | 130, 917, 1398, 2610, 3186, 3255, 3586 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3238 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1690 |
| Vha464I | CTTAAG | 3 cut(s) | 1879, 2045, 2852 |
| VpaK11BI | GGWCC | 4 cut(s) | 70, 347, 2523, 3303 |
| XbaI | TCTAGA | 2 cut(s) | 1927, 3001 |
| XceI | RCATGY | 4 cut(s) | 473, 482, 518, 1542 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 427 |
| XhoI | CTCGAG | 2 cut(s) | 1179, 2924 |
| XmaJI | CCTAGG | 1 cut(s) | 2239 |
| XmiI | GTMKAC | 2 cut(s) | 1479, 3779 |
| XmnI | GAANNNNTTC | 3 cut(s) | 810, 1278, 3903 |
| XspI | CTAG | 7 cut(s) | 185, 1007, 1208, 1928, 2240, 2739, 3002 |
| ZrmI | AGTACT | 1 cut(s) | 2401 |
| Zsp2I | ATGCAT | 1 cut(s) | 1875 |