RESISTANCE protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 20 - 193 | 4.1e-48 | TIR domain |
| TIR_2 | PF13676 | 23 - 117 | 5.4e-13 | TIR domain |
| AAA_16 | PF13191 | 194 - 312 | 2.5e-06 | AAA ATPase domain |
| NB-ARC | PF00931 | 214 - 373 | 1e-15 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 439 - 508 | 2.6e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 754 - 860 | 9.3e-11 | Leucine-rich repeat region |
| LRR_Zer-1 | PF25013 | 779 - 904 | 6.7e-06 | Zer-1-like, Leucine-rich repeats |
| LRR_13 | PF23286 | 829 - 1017 | 8.6e-12 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 929 - 999 | 4.4e-06 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 3516 |
| Acc36I | ACCTGC | 2 cut(s) | 90, 1121 |
| AccB1I | GGYRCC | 2 cut(s) | 270, 2136 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1585, 2478 |
| AccBSI | CCGCTC | 3 cut(s) | 175, 378, 1548 |
| AccII | CGCG | 1 cut(s) | 1506 |
| AciI | CCGC | 9 cut(s) | 97, 175, 378, 458, 892, 1399, 1419, 1504, 1546 |
| AclI | AACGTT | 1 cut(s) | 400 |
| AclWI | GGATC | 4 cut(s) | 2238, 2301, 3078, 3328 |
| AcoI | YGGCCR | 1 cut(s) | 1790 |
| AcsI | RAATTY | 7 cut(s) | 1159, 1795, 2181, 2475, 2543, 2997, 3288 |
| AcuI | CTGAAG | 6 cut(s) | 64, 1058, 1551, 1764, 2150, 2882 |
| AcyI | GRCGYC | 1 cut(s) | 3513 |
| AdeI | CACNNNGTG | 1 cut(s) | 1968 |
| AfaI | GTAC | 6 cut(s) | 314, 871, 1035, 1685, 2867, 3601 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1585, 2478, 2661, 3584, 3596 |
| AflII | CTTAAG | 2 cut(s) | 1565, 2273 |
| AflIII | ACRYGT | 2 cut(s) | 325, 3098 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 426 |
| AjiI | CACGTC | 1 cut(s) | 959 |
| AjnI | CCWGG | 7 cut(s) | 273, 1537, 1550, 1787, 3277, 3595, 3705 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1787, 1819, 2613, 2645, 3710, 3742 |
| AlwI | GGATC | 4 cut(s) | 2238, 2301, 3078, 3328 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 422, 2808 |
| Ama87I | CYCGRG | 1 cut(s) | 1754 |
| AoxI | GGCC | 8 cut(s) | 3, 86, 126, 1203, 1501, 1747, 1790, 3708 |
| ApaI | GGGCCC | 1 cut(s) | 90 |
| ApeKI | GCWGC | 4 cut(s) | 744, 1187, 2331, 2808 |
| ApoI | RAATTY | 7 cut(s) | 1159, 1795, 2181, 2475, 2543, 2997, 3288 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1332, 2103, 2825 |
| AspS9I | GGNCC | 7 cut(s) | 86, 87, 1204, 1501, 2797, 3587, 3681 |
| AsuC2I | CCSGG | 2 cut(s) | 2540, 3585 |
| AsuHPI | GGTGA | 2 cut(s) | 3526, 3781 |
| AvaI | CYCGRG | 1 cut(s) | 1754 |
| AvaII | GGWCC | 3 cut(s) | 2797, 3587, 3681 |
| AxyI | CCTNAGG | 1 cut(s) | 3249 |
| BaeGI | GKGCMC | 1 cut(s) | 90 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 339, 372 |
| BanI | GGYRCC | 2 cut(s) | 270, 2136 |
| BanII | GRGCYC | 1 cut(s) | 90 |
| BauI | CACGAG | 1 cut(s) | 559 |
| BbsI | GAAGAC | 5 cut(s) | 422, 695, 1278, 2576, 3789 |
| BbvI | GCAGC | 4 cut(s) | 731, 1174, 2343, 2795 |
| BceAI | ACGGC | 1 cut(s) | 1734 |
| BciT130I | CCWGG | 7 cut(s) | 275, 1539, 1552, 1789, 3279, 3597, 3707 |
| BciVI | GTATCC | 1 cut(s) | 142 |
| BclI | TGATCA | 1 cut(s) | 450 |
| BcnI | CCSGG | 2 cut(s) | 2540, 3585 |
| BfaI | CTAG | 6 cut(s) | 905, 1002, 1665, 1700, 2418, 2993 |
| BfmI | CTRYAG | 6 cut(s) | 657, 861, 873, 1128, 1188, 1861 |
| BfrI | CTTAAG | 2 cut(s) | 1565, 2273 |
| BfuAI | ACCTGC | 2 cut(s) | 90, 1121 |
| BfuI | GTATCC | 1 cut(s) | 142 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3707 |
| BglII | AGATCT | 2 cut(s) | 218, 1702 |
| BisI | GCNGC | 8 cut(s) | 459, 745, 892, 1188, 1399, 1504, 2332, 2809 |
| BlsI | GCNGC | 8 cut(s) | 460, 746, 893, 1189, 1400, 1505, 2333, 2810 |
| BmcAI | AGTACT | 3 cut(s) | 314, 1035, 2867 |
| Bme1390I | CCNGG | 9 cut(s) | 275, 1539, 1552, 1789, 2540, 3279, 3585, 3597, 3707 |
| Bme18I | GGWCC | 3 cut(s) | 2797, 3587, 3681 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 426 |
| BmeT110I | CYCGRG | 1 cut(s) | 1754 |
| BmgBI | CACGTC | 1 cut(s) | 959 |
| BmgT120I | GGNCC | 7 cut(s) | 86, 87, 1204, 1501, 2797, 3587, 3681 |
| BmiI | GGNNCC | 6 cut(s) | 88, 272, 1907, 2085, 2138, 2666 |
| BmrFI | CCNGG | 9 cut(s) | 275, 1539, 1552, 1789, 2540, 3279, 3585, 3597, 3707 |
| BmrI | ACTGGG | 1 cut(s) | 2650 |
| BmsI | GCATC | 9 cut(s) | 32, 490, 727, 1467, 2154, 2919, 2995, 3160, 3358 |
| BmuI | ACTGGG | 1 cut(s) | 2650 |
| BpiI | GAAGAC | 5 cut(s) | 422, 695, 1278, 2576, 3789 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2399, 2431, 3242, 3274 |
| BpmI | CTGGAG | 6 cut(s) | 1237, 1534, 1856, 2683, 3047, 3072 |
| Bpu10I | CCTNAGC | 1 cut(s) | 976 |
| BpuEI | CTTGAG | 6 cut(s) | 191, 621, 1330, 1994, 2516, 2693 |
| BpuMI | CCSGG | 2 cut(s) | 2540, 3585 |
| Bsa29I | ATCGAT | 2 cut(s) | 1920, 2402 |
| BsaAI | YACGTR | 2 cut(s) | 3101, 3122 |
| BsaBI | GATNNNNATC | 2 cut(s) | 165, 335 |
| BsaHI | GRCGYC | 1 cut(s) | 3513 |
| BsaI | GGTCTC | 2 cut(s) | 1449, 2274 |
| BsaJI | CCNNGG | 7 cut(s) | 129, 231, 1200, 1880, 1901, 2226, 3802 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2964, 2994, 3020, 3050 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1585, 2478, 2661, 3584, 3596 |
| Bse1I | ACTGG | 7 cut(s) | 300, 2656, 2814, 3055, 3464, 3683, 3684 |
| Bse21I | CCTNAGG | 1 cut(s) | 3249 |
| Bse3DI | GCAATG | 2 cut(s) | 2249, 3703 |
| Bse8I | GATNNNNATC | 2 cut(s) | 165, 335 |
| BseBI | CCWGG | 7 cut(s) | 275, 1539, 1552, 1789, 3279, 3597, 3707 |
| BseCI | ATCGAT | 2 cut(s) | 1920, 2402 |
| BseDI | CCNNGG | 7 cut(s) | 129, 231, 1200, 1880, 1901, 2226, 3802 |
| BseGI | GGATG | 7 cut(s) | 42, 139, 502, 1252, 1482, 3010, 3349 |
| BseJI | GATNNNNATC | 2 cut(s) | 165, 335 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1585, 2478, 2661, 3584, 3596 |
| BseMI | GCAATG | 2 cut(s) | 2249, 3703 |
| BseNI | ACTGG | 7 cut(s) | 300, 2656, 2814, 3055, 3464, 3683, 3684 |
| BseSI | GKGCMC | 1 cut(s) | 90 |
| BseXI | GCAGC | 4 cut(s) | 731, 1174, 2343, 2795 |
| BsgI | GTGCAG | 1 cut(s) | 2794 |
| Bsh1236I | CGCG | 1 cut(s) | 1506 |
| Bsh1285I | CGRYCG | 2 cut(s) | 2406, 3760 |
| BshFI | GGCC | 8 cut(s) | 5, 88, 128, 1205, 1503, 1749, 1792, 3710 |
| BshNI | GGYRCC | 2 cut(s) | 270, 2136 |
| BshVI | ATCGAT | 2 cut(s) | 1920, 2402 |
| BsiEI | CGRYCG | 2 cut(s) | 2406, 3760 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1754 |
| BsiSI | CCGG | 2 cut(s) | 2540, 3585 |
| BslFI | GGGAC | 2 cut(s) | 845, 1182 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1585, 2478, 2661, 3584, 3596 |
| BsmBI | CGTCTC | 2 cut(s) | 1757, 3360 |
| BsmFI | GGGAC | 2 cut(s) | 845, 1182 |
| BsmI | GAATGC | 1 cut(s) | 305 |
| BsnI | GGCC | 8 cut(s) | 5, 88, 128, 1205, 1503, 1749, 1792, 3710 |
| Bso31I | GGTCTC | 2 cut(s) | 1449, 2274 |
| BsoBI | CYCGRG | 1 cut(s) | 1754 |
| Bsp120I | GGGCCC | 1 cut(s) | 86 |
| Bsp1286I | GDGCHC | 1 cut(s) | 90 |
| Bsp1407I | TGTACA | 1 cut(s) | 1683 |
| Bsp19I | CCATGG | 1 cut(s) | 1880 |
| BspACI | CCGC | 9 cut(s) | 97, 175, 378, 458, 892, 1399, 1419, 1504, 1546 |
| BspANI | GGCC | 8 cut(s) | 5, 88, 128, 1205, 1503, 1749, 1792, 3710 |
| BspDI | ATCGAT | 2 cut(s) | 1920, 2402 |
| BspFNI | CGCG | 1 cut(s) | 1506 |
| BspHI | TCATGA | 2 cut(s) | 817, 2841 |
| BspLI | GGNNCC | 6 cut(s) | 88, 272, 1907, 2085, 2138, 2666 |
| BspMAI | CTGCAG | 2 cut(s) | 1132, 1192 |
| BspMI | ACCTGC | 2 cut(s) | 90, 1121 |
| BspPI | GGATC | 4 cut(s) | 2238, 2301, 3078, 3328 |
| BspQI | GCTCTTC | 2 cut(s) | 1115, 1527 |
| BspT107I | GGYRCC | 2 cut(s) | 270, 2136 |
| BspTI | CTTAAG | 2 cut(s) | 1565, 2273 |
| BspTNI | GGTCTC | 2 cut(s) | 1449, 2274 |
| BsrBI | CCGCTC | 3 cut(s) | 175, 378, 1548 |
| BsrDI | GCAATG | 2 cut(s) | 2249, 3703 |
| BsrGI | TGTACA | 1 cut(s) | 1683 |
| BsrI | ACTGG | 7 cut(s) | 300, 2656, 2814, 3055, 3464, 3683, 3684 |
| BssECI | CCNNGG | 7 cut(s) | 129, 231, 1200, 1880, 1901, 2226, 3802 |
| BssNI | GRCGYC | 1 cut(s) | 3513 |
| BssSI | CACGAG | 1 cut(s) | 559 |
| BssT1I | CCWWGG | 6 cut(s) | 129, 1200, 1880, 1901, 2226, 3802 |
| Bst2BI | CACGAG | 1 cut(s) | 559 |
| Bst2UI | CCWGG | 7 cut(s) | 275, 1539, 1552, 1789, 3279, 3597, 3707 |
| Bst4CI | ACNGT | 8 cut(s) | 317, 352, 869, 1722, 2119, 3406, 3471, 3639 |
| Bst6I | CTCTTC | 6 cut(s) | 16, 1115, 1527, 1767, 3579, 3819 |
| BstACI | GRCGYC | 1 cut(s) | 3513 |
| BstAFI | CTTAAG | 2 cut(s) | 1565, 2273 |
| BstAUI | TGTACA | 1 cut(s) | 1683 |
| BstBAI | YACGTR | 2 cut(s) | 3101, 3122 |
| BstC8I | GCNNGC | 5 cut(s) | 742, 1192, 2141, 3703, 3791 |
| BstDSI | CCRYGG | 2 cut(s) | 231, 1880 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3594 |
| BstF5I | GGATG | 7 cut(s) | 42, 139, 502, 1252, 1482, 3010, 3349 |
| BstFNI | CGCG | 1 cut(s) | 1506 |
| BstMCI | CGRYCG | 2 cut(s) | 2406, 3760 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 808, 1187, 1855, 2110, 3346, 3702, 3707 |
| BstNI | CCWGG | 7 cut(s) | 275, 1539, 1552, 1789, 3279, 3597, 3707 |
| BstNSI | RCATGY | 1 cut(s) | 329 |
| BstSCI | CCNGG | 9 cut(s) | 273, 1537, 1550, 1787, 2538, 3277, 3583, 3595, 3705 |
| BstSFI | CTRYAG | 6 cut(s) | 657, 861, 873, 1128, 1188, 1861 |
| BstSLI | GKGCMC | 1 cut(s) | 90 |
| BstUI | CGCG | 1 cut(s) | 1506 |
| BstV1I | GCAGC | 4 cut(s) | 731, 1174, 2343, 2795 |
| BstV2I | GAAGAC | 5 cut(s) | 422, 695, 1278, 2576, 3789 |
| BstX2I | RGATCY | 5 cut(s) | 218, 1702, 2230, 2293, 3320 |
| BstYI | RGATCY | 5 cut(s) | 218, 1702, 2230, 2293, 3320 |
| Bsu15I | ATCGAT | 2 cut(s) | 1920, 2402 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3249 |
| BsuI | GTATCC | 1 cut(s) | 142 |
| BsuRI | GGCC | 8 cut(s) | 5, 88, 128, 1205, 1503, 1749, 1792, 3710 |
| BsuTUI | ATCGAT | 2 cut(s) | 1920, 2402 |
| BtgI | CCRYGG | 2 cut(s) | 231, 1880 |
| BtgZI | GCGATG | 1 cut(s) | 1327 |
| BtrI | CACGTC | 1 cut(s) | 959 |
| BtsCI | GGATG | 7 cut(s) | 42, 139, 502, 1252, 1482, 3010, 3349 |
| BtsI | GCAGTG | 1 cut(s) | 885 |
| BtsIMutI | CAGTG | 7 cut(s) | 885, 2663, 2809, 2858, 2884, 3476, 3676 |
| BveI | ACCTGC | 2 cut(s) | 90, 1121 |
| Cac8I | GCNNGC | 5 cut(s) | 742, 1192, 2141, 3703, 3791 |
| CaiI | CAGNNNCTG | 2 cut(s) | 422, 2808 |
| CciI | TCATGA | 2 cut(s) | 817, 2841 |
| Cfr13I | GGNCC | 7 cut(s) | 86, 87, 1204, 1501, 2797, 3587, 3681 |
| ClaI | ATCGAT | 2 cut(s) | 1920, 2402 |
| CseI | GACGC | 1 cut(s) | 416 |
| CsiI | ACCWGGT | 1 cut(s) | 3595 |
| Csp6I | GTAC | 6 cut(s) | 313, 870, 1034, 1684, 2866, 3600 |
| CviQI | GTAC | 6 cut(s) | 313, 870, 1034, 1684, 2866, 3600 |
| DraI | TTTAAA | 2 cut(s) | 1392, 1653 |
| DraIII | CACNNNGTG | 1 cut(s) | 1968 |
| DriI | GACNNNNNGTC | 1 cut(s) | 426 |
| EaeI | YGGCCR | 1 cut(s) | 1790 |
| Eam1104I | CTCTTC | 6 cut(s) | 16, 1115, 1527, 1767, 3579, 3819 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 426 |
| EarI | CTCTTC | 6 cut(s) | 16, 1115, 1527, 1767, 3579, 3819 |
| Eco130I | CCWWGG | 6 cut(s) | 129, 1200, 1880, 1901, 2226, 3802 |
| Eco147I | AGGCCT | 2 cut(s) | 128, 3710 |
| Eco24I | GRGCYC | 1 cut(s) | 90 |
| Eco31I | GGTCTC | 2 cut(s) | 1449, 2274 |
| Eco32I | GATATC | 3 cut(s) | 847, 1781, 3334 |
| Eco47I | GGWCC | 3 cut(s) | 2797, 3587, 3681 |
| Eco57I | CTGAAG | 6 cut(s) | 64, 1058, 1551, 1764, 2150, 2882 |
| Eco81I | CCTNAGG | 1 cut(s) | 3249 |
| Eco88I | CYCGRG | 1 cut(s) | 1754 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3594 |
| EcoO109I | RGGNCCY | 1 cut(s) | 86 |
| EcoRII | CCWGG | 7 cut(s) | 273, 1537, 1550, 1787, 3277, 3595, 3705 |
| EcoRV | GATATC | 3 cut(s) | 847, 1781, 3334 |
| EcoT14I | CCWWGG | 6 cut(s) | 129, 1200, 1880, 1901, 2226, 3802 |
| EcoT22I | ATGCAT | 2 cut(s) | 1482, 3175 |
| EcoT38I | GRGCYC | 1 cut(s) | 90 |
| ErhI | CCWWGG | 6 cut(s) | 129, 1200, 1880, 1901, 2226, 3802 |
| Esp3I | CGTCTC | 2 cut(s) | 1757, 3360 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 113, 145 |
| FaqI | GGGAC | 2 cut(s) | 845, 1182 |
| FauI | CCCGC | 3 cut(s) | 104, 168, 371 |
| FauNDI | CATATG | 2 cut(s) | 1854, 2945 |
| FbaI | TGATCA | 1 cut(s) | 450 |
| Fnu4HI | GCNGC | 8 cut(s) | 459, 745, 892, 1188, 1399, 1504, 2332, 2809 |
| FokI | GGATG | 7 cut(s) | 29, 146, 509, 1259, 1489, 3017, 3336 |
| FriOI | GRGCYC | 1 cut(s) | 90 |
| Fsp4HI | GCNGC | 8 cut(s) | 459, 745, 892, 1188, 1399, 1504, 2332, 2809 |
| FspBI | CTAG | 6 cut(s) | 905, 1002, 1665, 1700, 2418, 2993 |
| GluI | GCNGC | 8 cut(s) | 459, 745, 892, 1188, 1399, 1504, 2332, 2809 |
| GsuI | CTGGAG | 6 cut(s) | 1237, 1534, 1856, 2683, 3047, 3072 |
| HaeIII | GGCC | 8 cut(s) | 5, 88, 128, 1205, 1503, 1749, 1792, 3710 |
| HapII | CCGG | 2 cut(s) | 2540, 3585 |
| HgaI | GACGC | 1 cut(s) | 416 |
| Hin1I | GRCGYC | 1 cut(s) | 3513 |
| HincII | GTYRAC | 4 cut(s) | 925, 1659, 3380, 3409 |
| HindII | GTYRAC | 4 cut(s) | 925, 1659, 3380, 3409 |
| HindIII | AAGCTT | 6 cut(s) | 809, 1171, 2102, 2111, 2279, 3338 |
| HpaII | CCGG | 2 cut(s) | 2540, 3585 |
| HphI | GGTGA | 2 cut(s) | 3526, 3781 |
| Hpy166II | GTNNAC | 9 cut(s) | 320, 558, 925, 1267, 1414, 1659, 3380, 3409, 3467 |
| Hpy8I | GTNNAC | 9 cut(s) | 320, 558, 925, 1267, 1414, 1659, 3380, 3409, 3467 |
| Hpy99I | CGWCG | 1 cut(s) | 3515 |
| HpyCH4III | ACNGT | 8 cut(s) | 317, 352, 869, 1722, 2119, 3406, 3471, 3639 |
| HpyCH4IV | ACGT | 7 cut(s) | 400, 921, 958, 968, 3100, 3121, 3513 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 808, 1187, 1855, 2110, 3346, 3702, 3707 |
| HpySE526I | ACGT | 7 cut(s) | 400, 921, 958, 968, 3100, 3121, 3513 |
| Hsp92I | GRCGYC | 1 cut(s) | 3513 |
| Ksp22I | TGATCA | 1 cut(s) | 450 |
| LguI | GCTCTTC | 2 cut(s) | 1115, 1527 |
| LmnI | GCTCC | 6 cut(s) | 587, 1281, 1553, 1637, 2664, 2985 |
| Lsp1109I | GCAGC | 4 cut(s) | 731, 1174, 2343, 2795 |
| LweI | GCATC | 9 cut(s) | 32, 490, 727, 1467, 2154, 2919, 2995, 3160, 3358 |
| MabI | ACCWGGT | 1 cut(s) | 3595 |
| MaeI | CTAG | 6 cut(s) | 905, 1002, 1665, 1700, 2418, 2993 |
| MaeII | ACGT | 7 cut(s) | 400, 921, 958, 968, 3100, 3121, 3513 |
| MaeIII | GTNAC | 9 cut(s) | 964, 1049, 1165, 2306, 2879, 3055, 3094, 3101, 3442 |
| MbiI | CCGCTC | 3 cut(s) | 175, 378, 1548 |
| MfeI | CAATTG | 3 cut(s) | 1611, 2211, 2950 |
| MflI | RGATCY | 5 cut(s) | 218, 1702, 2230, 2293, 3320 |
| MhlI | GDGCHC | 1 cut(s) | 90 |
| MlyI | GAGTC | 7 cut(s) | 563, 909, 1766, 2041, 2470, 2566, 2606 |
| MmeI | TCCRAC | 2 cut(s) | 565, 3823 |
| Mph1103I | ATGCAT | 2 cut(s) | 1482, 3175 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1332, 2103, 2825 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2339, 3435, 3767 |
| MspA1I | CMGCKG | 1 cut(s) | 1419 |
| MspCI | CTTAAG | 2 cut(s) | 1565, 2273 |
| MspI | CCGG | 2 cut(s) | 2540, 3585 |
| MspR9I | CCNGG | 9 cut(s) | 275, 1539, 1552, 1789, 2540, 3279, 3585, 3597, 3707 |
| MunI | CAATTG | 3 cut(s) | 1611, 2211, 2950 |
| Mva1269I | GAATGC | 1 cut(s) | 305 |
| MvaI | CCWGG | 7 cut(s) | 275, 1539, 1552, 1789, 3279, 3597, 3707 |
| MvnI | CGCG | 1 cut(s) | 1506 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 808, 1187, 1855, 2110, 3346, 3702, 3707 |
| NciI | CCSGG | 2 cut(s) | 2540, 3585 |
| NcoI | CCATGG | 1 cut(s) | 1880 |
| NdeI | CATATG | 2 cut(s) | 1854, 2945 |
| NlaIV | GGNNCC | 6 cut(s) | 88, 272, 1907, 2085, 2138, 2666 |
| NmuCI | GTSAC | 3 cut(s) | 2879, 3094, 3442 |
| NsiI | ATGCAT | 2 cut(s) | 1482, 3175 |
| NspI | RCATGY | 1 cut(s) | 329 |
| PaeR7I | CTCGAG | 1 cut(s) | 1754 |
| PagI | TCATGA | 2 cut(s) | 817, 2841 |
| PceI | AGGCCT | 2 cut(s) | 128, 3710 |
| PciI | ACATGT | 1 cut(s) | 325 |
| PciSI | GCTCTTC | 2 cut(s) | 1115, 1527 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2616, 3390 |
| PctI | GAATGC | 1 cut(s) | 305 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1332, 2103, 2825 |
| PfeI | GAWTC | 9 cut(s) | 479, 614, 987, 1151, 2320, 2826, 2838, 3022, 3525 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1585, 2478 |
| PfoI | TCCNGGA | 2 cut(s) | 2538, 3277 |
| PkrI | GCNGC | 8 cut(s) | 460, 746, 893, 1189, 1400, 1505, 2333, 2810 |
| Ple19I | CGATCG | 2 cut(s) | 2406, 3760 |
| PleI | GAGTC | 7 cut(s) | 562, 908, 1765, 2040, 2469, 2566, 2606 |
| PpsI | GAGTC | 7 cut(s) | 562, 908, 1765, 2040, 2469, 2566, 2606 |
| Ppu21I | YACGTR | 2 cut(s) | 3101, 3122 |
| PscI | ACATGT | 1 cut(s) | 325 |
| Psp1406I | AACGTT | 1 cut(s) | 400 |
| Psp6I | CCWGG | 7 cut(s) | 273, 1537, 1550, 1787, 3277, 3595, 3705 |
| PspGI | CCWGG | 7 cut(s) | 273, 1537, 1550, 1787, 3277, 3595, 3705 |
| PspN4I | GGNNCC | 6 cut(s) | 88, 272, 1907, 2085, 2138, 2666 |
| PspOMI | GGGCCC | 1 cut(s) | 86 |
| PspPI | GGNCC | 7 cut(s) | 86, 87, 1204, 1501, 2797, 3587, 3681 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3457, 3489 |
| PstI | CTGCAG | 2 cut(s) | 1132, 1192 |
| PstNI | CAGNNNCTG | 2 cut(s) | 422, 2808 |
| PsuI | RGATCY | 5 cut(s) | 218, 1702, 2230, 2293, 3320 |
| PvuI | CGATCG | 2 cut(s) | 2406, 3760 |
| RsaI | GTAC | 6 cut(s) | 314, 871, 1035, 1685, 2867, 3601 |
| RsaNI | GTAC | 6 cut(s) | 313, 870, 1034, 1684, 2866, 3600 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2339, 3435, 3767 |
| SapI | GCTCTTC | 2 cut(s) | 1115, 1527 |
| SatI | GCNGC | 8 cut(s) | 459, 745, 892, 1188, 1399, 1504, 2332, 2809 |
| Sau96I | GGNCC | 7 cut(s) | 86, 87, 1204, 1501, 2797, 3587, 3681 |
| ScaI | AGTACT | 3 cut(s) | 314, 1035, 2867 |
| SchI | GAGTC | 7 cut(s) | 563, 909, 1766, 2041, 2470, 2566, 2606 |
| ScrFI | CCNGG | 9 cut(s) | 275, 1539, 1552, 1789, 2540, 3279, 3585, 3597, 3707 |
| SduI | GDGCHC | 1 cut(s) | 90 |
| SexAI | ACCWGGT | 1 cut(s) | 3595 |
| SfaNI | GCATC | 9 cut(s) | 32, 490, 727, 1467, 2154, 2919, 2995, 3160, 3358 |
| SfcI | CTRYAG | 6 cut(s) | 657, 861, 873, 1128, 1188, 1861 |
| Sfr274I | CTCGAG | 1 cut(s) | 1754 |
| SinI | GGWCC | 3 cut(s) | 2797, 3587, 3681 |
| SlaI | CTCGAG | 1 cut(s) | 1754 |
| SmiI | ATTTAAAT | 1 cut(s) | 1392 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2339, 3435, 3767 |
| SmlI | CTYRAG | 9 cut(s) | 170, 636, 1309, 1565, 1754, 1973, 2273, 2495, 2708 |
| SmoI | CTYRAG | 9 cut(s) | 170, 636, 1309, 1565, 1754, 1973, 2273, 2495, 2708 |
| SseBI | AGGCCT | 2 cut(s) | 128, 3710 |
| SsiI | CCGC | 9 cut(s) | 97, 175, 378, 458, 892, 1399, 1419, 1504, 1546 |
| SspI | AATATT | 4 cut(s) | 1332, 2729, 3091, 3619 |
| SspMI | CTAG | 6 cut(s) | 905, 1002, 1665, 1700, 2418, 2993 |
| StuI | AGGCCT | 2 cut(s) | 128, 3710 |
| StyD4I | CCNGG | 9 cut(s) | 273, 1537, 1550, 1787, 2538, 3277, 3583, 3595, 3705 |
| StyI | CCWWGG | 6 cut(s) | 129, 1200, 1880, 1901, 2226, 3802 |
| SwaI | ATTTAAAT | 1 cut(s) | 1392 |
| TaaI | ACNGT | 8 cut(s) | 317, 352, 869, 1722, 2119, 3406, 3471, 3639 |
| TaiI | ACGT | 7 cut(s) | 403, 924, 961, 971, 3103, 3124, 3516 |
| TatI | WGTACW | 4 cut(s) | 312, 1033, 1683, 2865 |
| TauI | GCSGC | 4 cut(s) | 461, 894, 1401, 1506 |
| TfiI | GAWTC | 9 cut(s) | 479, 614, 987, 1151, 2320, 2826, 2838, 3022, 3525 |
| TscAI | CASTG | 7 cut(s) | 885, 2663, 2809, 2865, 2884, 3476, 3683 |
| TseFI | GTSAC | 3 cut(s) | 2879, 3094, 3442 |
| TseI | GCWGC | 4 cut(s) | 744, 1187, 2331, 2808 |
| Tsp45I | GTSAC | 3 cut(s) | 2879, 3094, 3442 |
| TspGWI | ACGGA | 8 cut(s) | 220, 707, 1505, 2567, 2708, 2850, 3250, 3342 |
| TspRI | CASTG | 7 cut(s) | 885, 2663, 2809, 2865, 2884, 3476, 3683 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1585, 2478 |
| Vha464I | CTTAAG | 2 cut(s) | 1565, 2273 |
| VpaK11BI | GGWCC | 3 cut(s) | 2797, 3587, 3681 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3594 |
| XapI | RAATTY | 7 cut(s) | 1159, 1795, 2181, 2475, 2543, 2997, 3288 |
| XbaI | TCTAGA | 1 cut(s) | 2992 |
| XceI | RCATGY | 1 cut(s) | 329 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2233 |
| XhoI | CTCGAG | 1 cut(s) | 1754 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1332, 2103, 2825 |
| XspI | CTAG | 6 cut(s) | 905, 1002, 1665, 1700, 2418, 2993 |
| ZraI | GACGTC | 1 cut(s) | 3514 |
| ZrmI | AGTACT | 3 cut(s) | 314, 1035, 2867 |
| Zsp2I | ATGCAT | 2 cut(s) | 1482, 3175 |