TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 15 - 193 | 3.2e-57 | TIR domain |
| TIR_2 | PF13676 | 18 - 125 | 2.3e-13 | TIR domain |
| NB-ARC | PF00931 | 195 - 368 | 3.4e-23 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 436 - 506 | 1.5e-23 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 706 - 888 | 2.6e-07 | Leucine-rich repeat region |
| C-JID | PF20160 | 1033 - 1190 | 1.2e-17 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 187 |
| Acc36I | ACCTGC | 1 cut(s) | 187 |
| AccBSI | CCGCTC | 2 cut(s) | 2286, 2607 |
| AccI | GTMKAC | 1 cut(s) | 1718 |
| AciI | CCGC | 3 cut(s) | 6, 2284, 2607 |
| AclI | AACGTT | 1 cut(s) | 391 |
| AclWI | GGATC | 6 cut(s) | 323, 1511, 1641, 2205, 2937, 3000 |
| AcoI | YGGCCR | 3 cut(s) | 3, 831, 1620 |
| AcsI | RAATTY | 9 cut(s) | 605, 1253, 1380, 1422, 2091, 2251, 2954, 3111, 3389 |
| AcuI | CTGAAG | 9 cut(s) | 830, 1623, 1818, 2345, 2411, 2477, 2543, 2675, 2807 |
| AcvI | CACGTG | 1 cut(s) | 1523 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 883, 2921, 3494, 3522 |
| AflII | CTTAAG | 3 cut(s) | 1070, 1469, 2219 |
| AflIII | ACRYGT | 1 cut(s) | 1522 |
| AjiI | CACGTC | 2 cut(s) | 2877, 3062 |
| AjnI | CCWGG | 9 cut(s) | 570, 964, 1534, 1721, 1750, 1944, 2107, 2595, 2727 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1981, 2013, 3462, 3494, 3561, 3593 |
| Alw21I | GWGCWC | 4 cut(s) | 276, 420, 1944, 3004 |
| Alw44I | GTGCAC | 2 cut(s) | 272, 3000 |
| AlwI | GGATC | 6 cut(s) | 323, 1511, 1641, 2205, 2937, 3000 |
| Ama87I | CYCGRG | 3 cut(s) | 1111, 1982, 2177 |
| AoxI | GGCC | 9 cut(s) | 3, 482, 568, 831, 885, 961, 1620, 1773, 3444 |
| ApaI | GGGCCC | 1 cut(s) | 889 |
| ApaLI | GTGCAC | 2 cut(s) | 272, 3000 |
| ApeKI | GCWGC | 6 cut(s) | 446, 729, 2235, 2280, 2836, 2871 |
| ApoI | RAATTY | 9 cut(s) | 605, 1253, 1380, 1422, 2091, 2251, 2954, 3111, 3389 |
| AseI | ATTAAT | 1 cut(s) | 3087 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 89, 392, 1509 |
| AspLEI | GCGC | 1 cut(s) | 2323 |
| AspS9I | GGNCC | 5 cut(s) | 568, 885, 886, 962, 1774 |
| AsuC2I | CCSGG | 4 cut(s) | 82, 1112, 1113, 3102 |
| AsuHPI | GGTGA | 7 cut(s) | 85, 168, 956, 1127, 1244, 1466, 3538 |
| AsuII | TTCGAA | 2 cut(s) | 720, 1671 |
| AvaI | CYCGRG | 3 cut(s) | 1111, 1982, 2177 |
| AxyI | CCTNAGG | 2 cut(s) | 36, 1770 |
| BaeGI | GKGCMC | 3 cut(s) | 276, 889, 3004 |
| BalI | TGGCCA | 2 cut(s) | 833, 1622 |
| BanII | GRGCYC | 2 cut(s) | 889, 1190 |
| BarI | GAAGNNNNNNTAC | 8 cut(s) | 820, 852, 2318, 2350, 2648, 2680, 2780, 2812 |
| BbrPI | CACGTG | 1 cut(s) | 1523 |
| BbsI | GAAGAC | 3 cut(s) | 1227, 1611, 2219 |
| Bbv12I | GWGCWC | 4 cut(s) | 276, 420, 1944, 3004 |
| BbvCI | CCTCAGC | 1 cut(s) | 687 |
| BbvI | GCAGC | 6 cut(s) | 458, 716, 2247, 2267, 2823, 2858 |
| BccI | CCATC | 7 cut(s) | 108, 246, 340, 1292, 1624, 1828, 3288 |
| BceAI | ACGGC | 2 cut(s) | 337, 861 |
| BciT130I | CCWGG | 9 cut(s) | 572, 966, 1536, 1723, 1752, 1946, 2109, 2597, 2729 |
| BcnI | CCSGG | 4 cut(s) | 82, 1112, 1113, 3102 |
| BfaI | CTAG | 6 cut(s) | 939, 1697, 2451, 2849, 2882, 3185 |
| BfrI | CTTAAG | 3 cut(s) | 1070, 1469, 2219 |
| BfuAI | ACCTGC | 1 cut(s) | 187 |
| BglII | AGATCT | 1 cut(s) | 1699 |
| BisI | GCNGC | 8 cut(s) | 6, 447, 730, 2236, 2281, 2284, 2837, 2872 |
| BlsI | GCNGC | 8 cut(s) | 7, 448, 731, 2237, 2282, 2285, 2838, 2873 |
| BmeT110I | CYCGRG | 3 cut(s) | 1111, 1982, 2177 |
| BmgBI | CACGTC | 2 cut(s) | 2877, 3062 |
| BmgT120I | GGNCC | 5 cut(s) | 568, 885, 886, 962, 1774 |
| BmiI | GGNNCC | 3 cut(s) | 887, 1189, 3609 |
| BmrI | ACTGGG | 2 cut(s) | 1234, 3072 |
| BmuI | ACTGGG | 2 cut(s) | 1234, 3072 |
| BpiI | GAAGAC | 3 cut(s) | 1227, 1611, 2219 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2459, 2491, 2876, 2908 |
| BpmI | CTGGAG | 8 cut(s) | 176, 1176, 1734, 2420, 2486, 2552, 2609, 2741 |
| Bpu10I | CCTNAGC | 2 cut(s) | 419, 687 |
| Bpu14I | TTCGAA | 2 cut(s) | 720, 1671 |
| BpuEI | CTTGAG | 7 cut(s) | 1895, 2312, 2359, 2623, 2689, 2755, 2878 |
| BpuMI | CCSGG | 4 cut(s) | 82, 1112, 1113, 3102 |
| Bsa29I | ATCGAT | 1 cut(s) | 1923 |
| BsaAI | YACGTR | 2 cut(s) | 1523, 1654 |
| BsaBI | GATNNNNATC | 2 cut(s) | 951, 3155 |
| BsaI | GGTCTC | 1 cut(s) | 2178 |
| BsaJI | CCNNGG | 7 cut(s) | 964, 1110, 1111, 1722, 2840, 3193, 3441 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 883, 2921, 3494, 3522 |
| Bse1I | ACTGG | 7 cut(s) | 159, 633, 1229, 2403, 2469, 2535, 3078 |
| Bse21I | CCTNAGG | 2 cut(s) | 36, 1770 |
| Bse3DI | GCAATG | 3 cut(s) | 681, 735, 1204 |
| Bse8I | GATNNNNATC | 2 cut(s) | 951, 3155 |
| BseBI | CCWGG | 9 cut(s) | 572, 966, 1536, 1723, 1752, 1946, 2109, 2597, 2729 |
| BseCI | ATCGAT | 1 cut(s) | 1923 |
| BseDI | CCNNGG | 7 cut(s) | 964, 1110, 1111, 1722, 2840, 3193, 3441 |
| BseGI | GGATG | 8 cut(s) | 30, 172, 257, 637, 1664, 3129, 3149, 3437 |
| BseJI | GATNNNNATC | 2 cut(s) | 951, 3155 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 883, 2921, 3494, 3522 |
| BseMI | GCAATG | 3 cut(s) | 681, 735, 1204 |
| BseMII | CTCAG | 6 cut(s) | 50, 433, 678, 1761, 1778, 3691 |
| BseNI | ACTGG | 7 cut(s) | 159, 633, 1229, 2403, 2469, 2535, 3078 |
| BseRI | GAGGAG | 2 cut(s) | 3056, 3159 |
| BseSI | GKGCMC | 3 cut(s) | 276, 889, 3004 |
| BseXI | GCAGC | 6 cut(s) | 458, 716, 2247, 2267, 2823, 2858 |
| BseYI | CCCAGC | 2 cut(s) | 2373, 2637 |
| BsgI | GTGCAG | 2 cut(s) | 2857, 2895 |
| BshFI | GGCC | 9 cut(s) | 5, 484, 570, 833, 887, 963, 1622, 1775, 3446 |
| BshVI | ATCGAT | 1 cut(s) | 1923 |
| BsiHKAI | GWGCWC | 4 cut(s) | 276, 420, 1944, 3004 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1111, 1982, 2177 |
| BsiSI | CCGG | 4 cut(s) | 82, 485, 1112, 3101 |
| BslFI | GGGAC | 1 cut(s) | 3677 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 883, 2921, 3494, 3522 |
| BsmBI | CGTCTC | 2 cut(s) | 3068, 3649 |
| BsmFI | GGGAC | 1 cut(s) | 3677 |
| BsnI | GGCC | 9 cut(s) | 5, 484, 570, 833, 887, 963, 1622, 1775, 3446 |
| Bso31I | GGTCTC | 1 cut(s) | 2178 |
| BsoBI | CYCGRG | 3 cut(s) | 1111, 1982, 2177 |
| Bsp119I | TTCGAA | 2 cut(s) | 720, 1671 |
| Bsp120I | GGGCCC | 1 cut(s) | 885 |
| Bsp1286I | GDGCHC | 6 cut(s) | 276, 420, 889, 1190, 1944, 3004 |
| Bsp19I | CCATGG | 1 cut(s) | 2840 |
| BspACI | CCGC | 3 cut(s) | 6, 2284, 2607 |
| BspANI | GGCC | 9 cut(s) | 5, 484, 570, 833, 887, 963, 1622, 1775, 3446 |
| BspCNI | CTCAG | 6 cut(s) | 49, 432, 679, 1762, 1779, 3690 |
| BspDI | ATCGAT | 1 cut(s) | 1923 |
| BspLI | GGNNCC | 3 cut(s) | 887, 1189, 3609 |
| BspMI | ACCTGC | 1 cut(s) | 187 |
| BspPI | GGATC | 6 cut(s) | 323, 1511, 1641, 2205, 2937, 3000 |
| BspQI | GCTCTTC | 1 cut(s) | 2208 |
| BspT104I | TTCGAA | 2 cut(s) | 720, 1671 |
| BspTI | CTTAAG | 3 cut(s) | 1070, 1469, 2219 |
| BspTNI | GGTCTC | 1 cut(s) | 2178 |
| BsrBI | CCGCTC | 2 cut(s) | 2286, 2607 |
| BsrDI | GCAATG | 3 cut(s) | 681, 735, 1204 |
| BsrI | ACTGG | 7 cut(s) | 159, 633, 1229, 2403, 2469, 2535, 3078 |
| BssECI | CCNNGG | 7 cut(s) | 964, 1110, 1111, 1722, 2840, 3193, 3441 |
| BssNAI | GTATAC | 1 cut(s) | 1719 |
| BssT1I | CCWWGG | 1 cut(s) | 2840 |
| Bst1107I | GTATAC | 1 cut(s) | 1719 |
| Bst2UI | CCWGG | 9 cut(s) | 572, 966, 1536, 1723, 1752, 1946, 2109, 2597, 2729 |
| Bst4CI | ACNGT | 4 cut(s) | 300, 2890, 3520, 3622 |
| Bst6I | CTCTTC | 5 cut(s) | 715, 2208, 2387, 2453, 2519 |
| BstAFI | CTTAAG | 3 cut(s) | 1070, 1469, 2219 |
| BstBAI | YACGTR | 2 cut(s) | 1523, 1654 |
| BstBI | TTCGAA | 2 cut(s) | 720, 1671 |
| BstC8I | GCNNGC | 5 cut(s) | 727, 1560, 2370, 2634, 3697 |
| BstDSI | CCRYGG | 1 cut(s) | 2840 |
| BstF5I | GGATG | 8 cut(s) | 30, 172, 257, 637, 1664, 3129, 3149, 3437 |
| BstHHI | GCGC | 1 cut(s) | 2323 |
| BstNI | CCWGG | 9 cut(s) | 572, 966, 1536, 1723, 1752, 1946, 2109, 2597, 2729 |
| BstSLI | GKGCMC | 3 cut(s) | 276, 889, 3004 |
| BstV1I | GCAGC | 6 cut(s) | 458, 716, 2247, 2267, 2823, 2858 |
| BstV2I | GAAGAC | 3 cut(s) | 1227, 1611, 2219 |
| BstX2I | RGATCY | 4 cut(s) | 328, 1633, 1699, 2197 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1630 |
| BstYI | RGATCY | 4 cut(s) | 328, 1633, 1699, 2197 |
| BstZ17I | GTATAC | 1 cut(s) | 1719 |
| Bsu15I | ATCGAT | 1 cut(s) | 1923 |
| Bsu36I | CCTNAGG | 2 cut(s) | 36, 1770 |
| BsuRI | GGCC | 9 cut(s) | 5, 484, 570, 833, 887, 963, 1622, 1775, 3446 |
| BsuTUI | ATCGAT | 1 cut(s) | 1923 |
| BtgI | CCRYGG | 1 cut(s) | 2840 |
| BtrI | CACGTC | 2 cut(s) | 2877, 3062 |
| BtsCI | GGATG | 8 cut(s) | 30, 172, 257, 637, 1664, 3129, 3149, 3437 |
| BtsIMutI | CAGTG | 3 cut(s) | 626, 3516, 3685 |
| BveI | ACCTGC | 1 cut(s) | 187 |
| Cac8I | GCNNGC | 5 cut(s) | 727, 1560, 2370, 2634, 3697 |
| CfoI | GCGC | 1 cut(s) | 2323 |
| Cfr13I | GGNCC | 5 cut(s) | 568, 885, 886, 962, 1774 |
| Cfr9I | CCCGGG | 1 cut(s) | 1111 |
| ClaI | ATCGAT | 1 cut(s) | 1923 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1122, 1157 |
| EaeI | YGGCCR | 3 cut(s) | 3, 831, 1620 |
| Eam1104I | CTCTTC | 5 cut(s) | 715, 2208, 2387, 2453, 2519 |
| EarI | CTCTTC | 5 cut(s) | 715, 2208, 2387, 2453, 2519 |
| Eco130I | CCWWGG | 1 cut(s) | 2840 |
| Eco147I | AGGCCT | 1 cut(s) | 3446 |
| Eco24I | GRGCYC | 2 cut(s) | 889, 1190 |
| Eco31I | GGTCTC | 1 cut(s) | 2178 |
| Eco32I | GATATC | 2 cut(s) | 1336, 3637 |
| Eco57I | CTGAAG | 9 cut(s) | 830, 1623, 1818, 2345, 2411, 2477, 2543, 2675, 2807 |
| Eco72I | CACGTG | 1 cut(s) | 1523 |
| Eco81I | CCTNAGG | 2 cut(s) | 36, 1770 |
| Eco88I | CYCGRG | 3 cut(s) | 1111, 1982, 2177 |
| EcoO109I | RGGNCCY | 4 cut(s) | 568, 885, 886, 1774 |
| EcoRI | GAATTC | 1 cut(s) | 2251 |
| EcoRII | CCWGG | 9 cut(s) | 570, 964, 1534, 1721, 1750, 1944, 2107, 2595, 2727 |
| EcoRV | GATATC | 2 cut(s) | 1336, 3637 |
| EcoT14I | CCWWGG | 1 cut(s) | 2840 |
| EcoT22I | ATGCAT | 4 cut(s) | 373, 1479, 1683, 3212 |
| EcoT38I | GRGCYC | 2 cut(s) | 889, 1190 |
| ErhI | CCWWGG | 1 cut(s) | 2840 |
| Esp3I | CGTCTC | 2 cut(s) | 3068, 3649 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2224, 2256 |
| FaqI | GGGAC | 1 cut(s) | 3677 |
| FauNDI | CATATG | 1 cut(s) | 1857 |
| FblI | GTMKAC | 1 cut(s) | 1718 |
| Fnu4HI | GCNGC | 8 cut(s) | 6, 447, 730, 2236, 2281, 2284, 2837, 2872 |
| FokI | GGATG | 8 cut(s) | 17, 179, 264, 644, 1651, 3136, 3156, 3424 |
| FriOI | GRGCYC | 2 cut(s) | 889, 1190 |
| Fsp4HI | GCNGC | 8 cut(s) | 6, 447, 730, 2236, 2281, 2284, 2837, 2872 |
| FspBI | CTAG | 6 cut(s) | 939, 1697, 2451, 2849, 2882, 3185 |
| GlaI | GCGC | 1 cut(s) | 2322 |
| GluI | GCNGC | 8 cut(s) | 6, 447, 730, 2236, 2281, 2284, 2837, 2872 |
| GsaI | CCCAGC | 2 cut(s) | 2377, 2641 |
| GsuI | CTGGAG | 8 cut(s) | 176, 1176, 1734, 2420, 2486, 2552, 2609, 2741 |
| HaeIII | GGCC | 9 cut(s) | 5, 484, 570, 833, 887, 963, 1622, 1775, 3446 |
| HapII | CCGG | 4 cut(s) | 82, 485, 1112, 3101 |
| HhaI | GCGC | 1 cut(s) | 2323 |
| Hin6I | GCGC | 1 cut(s) | 2321 |
| HinP1I | GCGC | 1 cut(s) | 2321 |
| HincII | GTYRAC | 1 cut(s) | 2941 |
| HindII | GTYRAC | 1 cut(s) | 2941 |
| HindIII | AAGCTT | 6 cut(s) | 209, 723, 2051, 2183, 3161, 3697 |
| HpaII | CCGG | 4 cut(s) | 82, 485, 1112, 3101 |
| HphI | GGTGA | 7 cut(s) | 85, 168, 956, 1127, 1244, 1466, 3538 |
| Hpy166II | GTNNAC | 5 cut(s) | 274, 803, 1719, 2941, 3002 |
| Hpy8I | GTNNAC | 5 cut(s) | 274, 803, 1719, 2941, 3002 |
| Hpy99I | CGWCG | 2 cut(s) | 600, 3663 |
| HpyCH4III | ACNGT | 4 cut(s) | 300, 2890, 3520, 3622 |
| HpyCH4IV | ACGT | 5 cut(s) | 391, 1522, 1653, 2876, 3061 |
| HpySE526I | ACGT | 5 cut(s) | 391, 1522, 1653, 2876, 3061 |
| HspAI | GCGC | 1 cut(s) | 2321 |
| LguI | GCTCTTC | 1 cut(s) | 2208 |
| LmnI | GCTCC | 6 cut(s) | 1193, 1908, 1940, 2084, 2262, 3006 |
| Lsp1109I | GCAGC | 6 cut(s) | 458, 716, 2247, 2267, 2823, 2858 |
| MaeI | CTAG | 6 cut(s) | 939, 1697, 2451, 2849, 2882, 3185 |
| MaeII | ACGT | 5 cut(s) | 391, 1522, 1653, 2876, 3061 |
| MaeIII | GTNAC | 4 cut(s) | 982, 2877, 3197, 3299 |
| MbiI | CCGCTC | 2 cut(s) | 2286, 2607 |
| MfeI | CAATTG | 1 cut(s) | 195 |
| MflI | RGATCY | 4 cut(s) | 328, 1633, 1699, 2197 |
| MhlI | GDGCHC | 6 cut(s) | 276, 420, 889, 1190, 1944, 3004 |
| MlsI | TGGCCA | 2 cut(s) | 833, 1622 |
| MluNI | TGGCCA | 2 cut(s) | 833, 1622 |
| MmeI | TCCRAC | 3 cut(s) | 101, 471, 556 |
| Mox20I | TGGCCA | 2 cut(s) | 833, 1622 |
| Mph1103I | ATGCAT | 4 cut(s) | 373, 1479, 1683, 3212 |
| MroXI | GAANNNNTTC | 3 cut(s) | 89, 392, 1509 |
| MscI | TGGCCA | 2 cut(s) | 833, 1622 |
| MslI | CAYNNNNRTG | 4 cut(s) | 105, 1365, 1622, 1628 |
| Msp20I | TGGCCA | 2 cut(s) | 833, 1622 |
| MspCI | CTTAAG | 3 cut(s) | 1070, 1469, 2219 |
| MspI | CCGG | 4 cut(s) | 82, 485, 1112, 3101 |
| MunI | CAATTG | 1 cut(s) | 195 |
| MvaI | CCWGG | 9 cut(s) | 572, 966, 1536, 1723, 1752, 1946, 2109, 2597, 2729 |
| NciI | CCSGG | 4 cut(s) | 82, 1112, 1113, 3102 |
| NcoI | CCATGG | 1 cut(s) | 2840 |
| NdeI | CATATG | 1 cut(s) | 1857 |
| NlaIV | GGNNCC | 3 cut(s) | 887, 1189, 3609 |
| NmuCI | GTSAC | 2 cut(s) | 2877, 3299 |
| NsiI | ATGCAT | 4 cut(s) | 373, 1479, 1683, 3212 |
| NspV | TTCGAA | 2 cut(s) | 720, 1671 |
| PaeR7I | CTCGAG | 2 cut(s) | 1982, 2177 |
| PaqCI | CACCTGC | 1 cut(s) | 187 |
| PceI | AGGCCT | 1 cut(s) | 3446 |
| PciSI | GCTCTTC | 1 cut(s) | 2208 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1519 |
| PdmI | GAANNNNTTC | 3 cut(s) | 89, 392, 1509 |
| PfeI | GAWTC | 8 cut(s) | 203, 467, 752, 787, 793, 975, 2041, 2134 |
| PfoI | TCCNGGA | 2 cut(s) | 1534, 3100 |
| PkrI | GCNGC | 8 cut(s) | 7, 448, 731, 2237, 2282, 2285, 2838, 2873 |
| PmaCI | CACGTG | 1 cut(s) | 1523 |
| PmlI | CACGTG | 1 cut(s) | 1523 |
| Ppu21I | YACGTR | 2 cut(s) | 1523, 1654 |
| PshBI | ATTAAT | 1 cut(s) | 3087 |
| Psp1406I | AACGTT | 1 cut(s) | 391 |
| Psp6I | CCWGG | 9 cut(s) | 570, 964, 1534, 1721, 1750, 1944, 2107, 2595, 2727 |
| PspCI | CACGTG | 1 cut(s) | 1523 |
| PspFI | CCCAGC | 2 cut(s) | 2373, 2637 |
| PspGI | CCWGG | 9 cut(s) | 570, 964, 1534, 1721, 1750, 1944, 2107, 2595, 2727 |
| PspN4I | GGNNCC | 3 cut(s) | 887, 1189, 3609 |
| PspOMI | GGGCCC | 1 cut(s) | 885 |
| PspPI | GGNCC | 5 cut(s) | 568, 885, 886, 962, 1774 |
| PsuI | RGATCY | 4 cut(s) | 328, 1633, 1699, 2197 |
| RseI | CAYNNNNRTG | 4 cut(s) | 105, 1365, 1622, 1628 |
| SapI | GCTCTTC | 1 cut(s) | 2208 |
| SatI | GCNGC | 8 cut(s) | 6, 447, 730, 2236, 2281, 2284, 2837, 2872 |
| Sau96I | GGNCC | 5 cut(s) | 568, 885, 886, 962, 1774 |
| SduI | GDGCHC | 6 cut(s) | 276, 420, 889, 1190, 1944, 3004 |
| Sfr274I | CTCGAG | 2 cut(s) | 1982, 2177 |
| SfuI | TTCGAA | 2 cut(s) | 720, 1671 |
| SlaI | CTCGAG | 2 cut(s) | 1982, 2177 |
| SmaI | CCCGGG | 1 cut(s) | 1113 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 105, 1365, 1622, 1628 |
| SseBI | AGGCCT | 1 cut(s) | 3446 |
| SsiI | CCGC | 3 cut(s) | 6, 2284, 2607 |
| SspI | AATATT | 4 cut(s) | 1197, 1460, 3091, 3475 |
| SspMI | CTAG | 6 cut(s) | 939, 1697, 2451, 2849, 2882, 3185 |
| StuI | AGGCCT | 1 cut(s) | 3446 |
| StyI | CCWWGG | 1 cut(s) | 2840 |
| TaaI | ACNGT | 4 cut(s) | 300, 2890, 3520, 3622 |
| TaiI | ACGT | 5 cut(s) | 394, 1525, 1656, 2879, 3064 |
| TatI | WGTACW | 4 cut(s) | 1704, 2334, 2664, 2796 |
| TauI | GCSGC | 2 cut(s) | 8, 2286 |
| TfiI | GAWTC | 8 cut(s) | 203, 467, 752, 787, 793, 975, 2041, 2134 |
| TscAI | CASTG | 3 cut(s) | 633, 3523, 3685 |
| TseFI | GTSAC | 2 cut(s) | 2877, 3299 |
| TseI | GCWGC | 6 cut(s) | 446, 729, 2235, 2280, 2836, 2871 |
| Tsp45I | GTSAC | 2 cut(s) | 2877, 3299 |
| TspGWI | ACGGA | 4 cut(s) | 1180, 1438, 3019, 3314 |
| TspMI | CCCGGG | 1 cut(s) | 1111 |
| TspRI | CASTG | 3 cut(s) | 633, 3523, 3685 |
| Vha464I | CTTAAG | 3 cut(s) | 1070, 1469, 2219 |
| VneI | GTGCAC | 2 cut(s) | 272, 3000 |
| VspI | ATTAAT | 1 cut(s) | 3087 |
| XapI | RAATTY | 9 cut(s) | 605, 1253, 1380, 1422, 2091, 2251, 2954, 3111, 3389 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2381, 2645 |
| XhoI | CTCGAG | 2 cut(s) | 1982, 2177 |
| XmaI | CCCGGG | 1 cut(s) | 1111 |
| XmiI | GTMKAC | 1 cut(s) | 1718 |
| XmnI | GAANNNNTTC | 3 cut(s) | 89, 392, 1509 |
| XspI | CTAG | 6 cut(s) | 939, 1697, 2451, 2849, 2882, 3185 |
| Zsp2I | ATGCAT | 4 cut(s) | 373, 1479, 1683, 3212 |