Disease resistance protein (TIR-NBS-LRR class)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1053, 1685 |
| AarI | CACCTGC | 1 cut(s) | 1846 |
| Acc36I | ACCTGC | 3 cut(s) | 1445, 1846, 3571 |
| Acc65I | GGTACC | 1 cut(s) | 1457 |
| AccB1I | GGYRCC | 1 cut(s) | 1457 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2206 |
| AccII | CGCG | 4 cut(s) | 758, 2226, 4440, 4492 |
| AccIII | TCCGGA | 2 cut(s) | 2119, 2713 |
| AclI | AACGTT | 4 cut(s) | 184, 2360, 3925, 3947 |
| AcoI | YGGCCR | 3 cut(s) | 1107, 4363, 4493 |
| AcuI | CTGAAG | 7 cut(s) | 60, 1293, 1778, 1970, 2259, 2582, 3871 |
| AcvI | CACGTG | 2 cut(s) | 409, 4225 |
| AdeI | CACNNNGTG | 2 cut(s) | 2194, 3455 |
| AfaI | GTAC | 7 cut(s) | 1032, 1459, 1588, 1828, 2236, 4060, 4465 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 591, 2126, 2206, 4450 |
| AflII | CTTAAG | 3 cut(s) | 2395, 3365, 3647 |
| AflIII | ACRYGT | 4 cut(s) | 408, 991, 1027, 4224 |
| AhlI | ACTAGT | 3 cut(s) | 1723, 4460, 4466 |
| AjiI | CACGTC | 1 cut(s) | 1615 |
| AjnI | CCWGG | 2 cut(s) | 2245, 2549 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1280, 1312, 1454, 1486, 1644, 1676 |
| AleI | CACNNNNGTG | 1 cut(s) | 2271 |
| Alw21I | GWGCWC | 6 cut(s) | 332, 2541, 3503, 3699, 3737, 4188 |
| Alw44I | GTGCAC | 1 cut(s) | 3733 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1814, 3767 |
| Ama87I | CYCGRG | 2 cut(s) | 1692, 3437 |
| Aor13HI | TCCGGA | 2 cut(s) | 2119, 2713 |
| ApaI | GGGCCC | 1 cut(s) | 3043 |
| ApaLI | GTGCAC | 1 cut(s) | 3733 |
| ApeKI | GCWGC | 7 cut(s) | 28, 794, 1136, 1814, 1871, 2102, 3528 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 173, 205 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1323, 1791, 3546 |
| Asp718I | GGTACC | 1 cut(s) | 1457 |
| AspLEI | GCGC | 2 cut(s) | 758, 2256 |
| AspS9I | GGNCC | 7 cut(s) | 531, 635, 860, 1664, 3039, 3040, 4201 |
| AsuC2I | CCSGG | 3 cut(s) | 219, 1668, 3960 |
| AsuHPI | GGTGA | 4 cut(s) | 589, 1793, 2285, 4163 |
| AsuII | TTCGAA | 1 cut(s) | 1416 |
| AvaI | CYCGRG | 2 cut(s) | 1692, 3437 |
| AvaII | GGWCC | 2 cut(s) | 635, 860 |
| BaeGI | GKGCMC | 4 cut(s) | 375, 3043, 3126, 3737 |
| BalI | TGGCCA | 2 cut(s) | 1109, 4365 |
| BamHI | GGATCC | 1 cut(s) | 2365 |
| BanI | GGYRCC | 1 cut(s) | 1457 |
| BanII | GRGCYC | 2 cut(s) | 2541, 3043 |
| BauI | CACGAG | 2 cut(s) | 2405, 3736 |
| BbrPI | CACGTG | 2 cut(s) | 409, 4225 |
| BbsI | GAAGAC | 5 cut(s) | 48, 1281, 2051, 3698, 4062 |
| Bbv12I | GWGCWC | 6 cut(s) | 332, 2541, 3503, 3699, 3737, 4188 |
| BbvCI | CCTCAGC | 1 cut(s) | 4026 |
| BbvI | GCAGC | 7 cut(s) | 15, 781, 1148, 1801, 1858, 2089, 3515 |
| BccI | CCATC | 9 cut(s) | 136, 792, 1030, 2006, 2120, 2515, 3346, 3635, 4307 |
| BceAI | ACGGC | 3 cut(s) | 170, 1569, 4224 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4257, 4291 |
| BciT130I | CCWGG | 2 cut(s) | 2247, 2551 |
| BcnI | CCSGG | 3 cut(s) | 219, 1668, 3960 |
| BcuI | ACTAGT | 3 cut(s) | 1723, 4460, 4466 |
| BfaI | CTAG | 7 cut(s) | 1520, 1724, 3564, 3710, 4428, 4461, 4467 |
| BfmI | CTRYAG | 5 cut(s) | 1338, 1554, 1872, 3250, 4159 |
| BfrI | CTTAAG | 3 cut(s) | 2395, 3365, 3647 |
| BfuAI | ACCTGC | 3 cut(s) | 1445, 1846, 3571 |
| BglII | AGATCT | 2 cut(s) | 1755, 2647 |
| BmcAI | AGTACT | 2 cut(s) | 2236, 4465 |
| Bme1390I | CCNGG | 5 cut(s) | 219, 1668, 2247, 2551, 3960 |
| Bme18I | GGWCC | 2 cut(s) | 635, 860 |
| BmeT110I | CYCGRG | 2 cut(s) | 1692, 3437 |
| BmgBI | CACGTC | 1 cut(s) | 1615 |
| BmgT120I | GGNCC | 7 cut(s) | 531, 635, 860, 1664, 3039, 3040, 4201 |
| BmrFI | CCNGG | 5 cut(s) | 219, 1668, 2247, 2551, 3960 |
| BmsI | GCATC | 9 cut(s) | 139, 1375, 1801, 2074, 2175, 2376, 2449, 3426, 4372 |
| BpiI | GAAGAC | 5 cut(s) | 48, 1281, 2051, 3698, 4062 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3431, 3463 |
| BpmI | CTGGAG | 5 cut(s) | 571, 643, 860, 1668, 2572 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3167, 4026 |
| Bpu14I | TTCGAA | 1 cut(s) | 1416 |
| BpuEI | CTTGAG | 5 cut(s) | 2355, 2465, 3245, 3764, 4133 |
| BpuMI | CCSGG | 3 cut(s) | 219, 1668, 3960 |
| Bsa29I | ATCGAT | 1 cut(s) | 2610 |
| BsaAI | YACGTR | 2 cut(s) | 409, 4225 |
| BsaBI | GATNNNNATC | 1 cut(s) | 82 |
| BsaI | GGTCTC | 2 cut(s) | 3003, 3605 |
| BsaJI | CCNNGG | 8 cut(s) | 639, 1666, 2549, 2625, 3065, 3520, 4366, 4490 |
| BsaWI | WCCGGW | 2 cut(s) | 2119, 2713 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 840, 870, 3604, 3634 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 591, 2126, 2206, 4450 |
| Bse1I | ACTGG | 7 cut(s) | 296, 843, 969, 1261, 1706, 3692, 4037 |
| Bse3DI | GCAATG | 2 cut(s) | 3575, 3864 |
| Bse8I | GATNNNNATC | 1 cut(s) | 82 |
| BseAI | TCCGGA | 2 cut(s) | 2119, 2713 |
| BseBI | CCWGG | 2 cut(s) | 2247, 2551 |
| BseCI | ATCGAT | 1 cut(s) | 2610 |
| BseDI | CCNNGG | 8 cut(s) | 639, 1666, 2549, 2625, 3065, 3520, 4366, 4490 |
| BseJI | GATNNNNATC | 1 cut(s) | 82 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 591, 2126, 2206, 4450 |
| BseMI | GCAATG | 2 cut(s) | 3575, 3864 |
| BseMII | CTCAG | 6 cut(s) | 172, 2583, 3158, 3647, 4040, 4272 |
| BseNI | ACTGG | 7 cut(s) | 296, 843, 969, 1261, 1706, 3692, 4037 |
| BseRI | GAGGAG | 1 cut(s) | 861 |
| BseSI | GKGCMC | 4 cut(s) | 375, 3043, 3126, 3737 |
| BseX3I | CGGCCG | 1 cut(s) | 4493 |
| BseXI | GCAGC | 7 cut(s) | 15, 781, 1148, 1801, 1858, 2089, 3515 |
| BsgI | GTGCAG | 3 cut(s) | 49, 3373, 4200 |
| Bsh1236I | CGCG | 4 cut(s) | 758, 2226, 4440, 4492 |
| Bsh1285I | CGRYCG | 1 cut(s) | 4496 |
| BshNI | GGYRCC | 1 cut(s) | 1457 |
| BshVI | ATCGAT | 1 cut(s) | 2610 |
| BsiEI | CGRYCG | 1 cut(s) | 4496 |
| BsiHKAI | GWGCWC | 6 cut(s) | 332, 2541, 3503, 3699, 3737, 4188 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1692, 3437 |
| BsiSI | CCGG | 5 cut(s) | 218, 1668, 2120, 2714, 3959 |
| BslFI | GGGAC | 5 cut(s) | 335, 621, 1538, 2765, 3331 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 591, 2126, 2206, 4450 |
| BsmBI | CGTCTC | 1 cut(s) | 1088 |
| BsmFI | GGGAC | 5 cut(s) | 335, 621, 1538, 2765, 3331 |
| BsmI | GAATGC | 2 cut(s) | 92, 974 |
| Bso31I | GGTCTC | 2 cut(s) | 3003, 3605 |
| BsoBI | CYCGRG | 2 cut(s) | 1692, 3437 |
| Bsp119I | TTCGAA | 1 cut(s) | 1416 |
| Bsp120I | GGGCCC | 1 cut(s) | 3039 |
| Bsp1286I | GDGCHC | 9 cut(s) | 332, 375, 2541, 3043, 3126, 3503, 3699, 3737, 4188 |
| Bsp13I | TCCGGA | 2 cut(s) | 2119, 2713 |
| Bsp1407I | TGTACA | 1 cut(s) | 1826 |
| Bsp19I | CCATGG | 2 cut(s) | 2625, 3065 |
| BspCNI | CTCAG | 6 cut(s) | 171, 2584, 3159, 3648, 4039, 4271 |
| BspDI | ATCGAT | 1 cut(s) | 2610 |
| BspEI | TCCGGA | 2 cut(s) | 2119, 2713 |
| BspFNI | CGCG | 4 cut(s) | 758, 2226, 4440, 4492 |
| BspMAI | CTGCAG | 1 cut(s) | 1876 |
| BspMI | ACCTGC | 3 cut(s) | 1445, 1846, 3571 |
| BspQI | GCTCTTC | 2 cut(s) | 1805, 3324 |
| BspT104I | TTCGAA | 1 cut(s) | 1416 |
| BspT107I | GGYRCC | 1 cut(s) | 1457 |
| BspTI | CTTAAG | 3 cut(s) | 2395, 3365, 3647 |
| BspTNI | GGTCTC | 2 cut(s) | 3003, 3605 |
| BsrDI | GCAATG | 2 cut(s) | 3575, 3864 |
| BsrGI | TGTACA | 1 cut(s) | 1826 |
| BsrI | ACTGG | 7 cut(s) | 296, 843, 969, 1261, 1706, 3692, 4037 |
| BssECI | CCNNGG | 8 cut(s) | 639, 1666, 2549, 2625, 3065, 3520, 4366, 4490 |
| BssSI | CACGAG | 2 cut(s) | 2405, 3736 |
| BssT1I | CCWWGG | 4 cut(s) | 639, 2625, 3065, 4366 |
| Bst2BI | CACGAG | 2 cut(s) | 2405, 3736 |
| Bst2UI | CCWGG | 2 cut(s) | 2247, 2551 |
| Bst6I | CTCTTC | 7 cut(s) | 697, 1411, 1797, 1805, 2558, 3324, 3800 |
| BstAFI | CTTAAG | 3 cut(s) | 2395, 3365, 3647 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1868, 4088 |
| BstAUI | TGTACA | 1 cut(s) | 1826 |
| BstBAI | YACGTR | 2 cut(s) | 409, 4225 |
| BstBI | TTCGAA | 1 cut(s) | 1416 |
| BstC8I | GCNNGC | 5 cut(s) | 649, 1122, 1380, 3674, 3835 |
| BstDSI | CCRYGG | 3 cut(s) | 2625, 3065, 4490 |
| BstEII | GGTNACC | 2 cut(s) | 595, 3179 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 589, 4448 |
| BstFNI | CGCG | 4 cut(s) | 758, 2226, 4440, 4492 |
| BstHHI | GCGC | 2 cut(s) | 758, 2256 |
| BstMCI | CGRYCG | 1 cut(s) | 4496 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 286, 675, 932, 1868, 2334, 2545, 3564, 4027, 4088 |
| BstNI | CCWGG | 2 cut(s) | 2247, 2551 |
| BstNSI | RCATGY | 4 cut(s) | 995, 1031, 2058, 3915 |
| BstPI | GGTNACC | 2 cut(s) | 595, 3179 |
| BstSCI | CCNGG | 5 cut(s) | 217, 1666, 2245, 2549, 3958 |
| BstSFI | CTRYAG | 5 cut(s) | 1338, 1554, 1872, 3250, 4159 |
| BstSLI | GKGCMC | 4 cut(s) | 375, 3043, 3126, 3737 |
| BstUI | CGCG | 4 cut(s) | 758, 2226, 4440, 4492 |
| BstV1I | GCAGC | 7 cut(s) | 15, 781, 1148, 1801, 1858, 2089, 3515 |
| BstV2I | GAAGAC | 5 cut(s) | 48, 1281, 2051, 3698, 4062 |
| BstX2I | RGATCY | 9 cut(s) | 260, 663, 1018, 1755, 2242, 2365, 2629, 2647, 4001 |
| BstYI | RGATCY | 9 cut(s) | 260, 663, 1018, 1755, 2242, 2365, 2629, 2647, 4001 |
| BstZI | CGGCCG | 1 cut(s) | 4493 |
| Bsu15I | ATCGAT | 1 cut(s) | 2610 |
| BsuTUI | ATCGAT | 1 cut(s) | 2610 |
| BtgI | CCRYGG | 3 cut(s) | 2625, 3065, 4490 |
| BtgZI | GCGATG | 1 cut(s) | 4421 |
| BtrI | CACGTC | 1 cut(s) | 1615 |
| BtsIMutI | CAGTG | 8 cut(s) | 36, 289, 352, 1423, 3126, 3699, 3768, 4030 |
| BveI | ACCTGC | 3 cut(s) | 1445, 1846, 3571 |
| Cac8I | GCNNGC | 5 cut(s) | 649, 1122, 1380, 3674, 3835 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1814, 3767 |
| CciNI | GCGGCCGC | 1 cut(s) | 4493 |
| CfoI | GCGC | 2 cut(s) | 758, 2256 |
| Cfr13I | GGNCC | 7 cut(s) | 531, 635, 860, 1664, 3039, 3040, 4201 |
| Cfr42I | CCGCGG | 1 cut(s) | 4493 |
| ClaI | ATCGAT | 1 cut(s) | 2610 |
| CseI | GACGC | 1 cut(s) | 3887 |
| Csp6I | GTAC | 7 cut(s) | 1031, 1458, 1587, 1827, 2235, 4059, 4464 |
| CspCI | CAANNNNNGTGG | 3 cut(s) | 33, 2922, 2957 |
| CviQI | GTAC | 7 cut(s) | 1031, 1458, 1587, 1827, 2235, 4059, 4464 |
| DraI | TTTAAA | 1 cut(s) | 3429 |
| DraIII | CACNNNGTG | 2 cut(s) | 2194, 3455 |
| EaeI | YGGCCR | 3 cut(s) | 1107, 4363, 4493 |
| EagI | CGGCCG | 1 cut(s) | 4493 |
| Eam1104I | CTCTTC | 7 cut(s) | 697, 1411, 1797, 1805, 2558, 3324, 3800 |
| EarI | CTCTTC | 7 cut(s) | 697, 1411, 1797, 1805, 2558, 3324, 3800 |
| EciI | GGCGGA | 1 cut(s) | 1571 |
| Ecl136II | GAGCTC | 1 cut(s) | 2539 |
| EclXI | CGGCCG | 1 cut(s) | 4493 |
| Eco130I | CCWWGG | 4 cut(s) | 639, 2625, 3065, 4366 |
| Eco24I | GRGCYC | 2 cut(s) | 2541, 3043 |
| Eco31I | GGTCTC | 2 cut(s) | 3003, 3605 |
| Eco47I | GGWCC | 2 cut(s) | 635, 860 |
| Eco52I | CGGCCG | 1 cut(s) | 4493 |
| Eco53kI | GAGCTC | 1 cut(s) | 2539 |
| Eco57I | CTGAAG | 7 cut(s) | 60, 1293, 1778, 1970, 2259, 2582, 3871 |
| Eco72I | CACGTG | 2 cut(s) | 409, 4225 |
| Eco88I | CYCGRG | 2 cut(s) | 1692, 3437 |
| Eco91I | GGTNACC | 2 cut(s) | 595, 3179 |
| EcoICRI | GAGCTC | 1 cut(s) | 2539 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 589, 4448 |
| EcoO109I | RGGNCCY | 2 cut(s) | 3039, 4201 |
| EcoO65I | GGTNACC | 2 cut(s) | 595, 3179 |
| EcoRI | GAATTC | 2 cut(s) | 1878, 2945 |
| EcoRII | CCWGG | 2 cut(s) | 2245, 2549 |
| EcoT14I | CCWWGG | 4 cut(s) | 639, 2625, 3065, 4366 |
| EcoT22I | ATGCAT | 1 cut(s) | 2391 |
| EcoT38I | GRGCYC | 2 cut(s) | 2541, 3043 |
| ErhI | CCWWGG | 4 cut(s) | 639, 2625, 3065, 4366 |
| Esp3I | CGTCTC | 1 cut(s) | 1088 |
| FaqI | GGGAC | 5 cut(s) | 335, 621, 1538, 2765, 3331 |
| FauI | CCCGC | 1 cut(s) | 871 |
| FauNDI | CATATG | 2 cut(s) | 2180, 2544 |
| FriOI | GRGCYC | 2 cut(s) | 2541, 3043 |
| FspBI | CTAG | 7 cut(s) | 1520, 1724, 3564, 3710, 4428, 4461, 4467 |
| GlaI | GCGC | 2 cut(s) | 757, 2255 |
| GsuI | CTGGAG | 5 cut(s) | 571, 643, 860, 1668, 2572 |
| HapII | CCGG | 5 cut(s) | 218, 1668, 2120, 2714, 3959 |
| HgaI | GACGC | 1 cut(s) | 3887 |
| HhaI | GCGC | 2 cut(s) | 758, 2256 |
| Hin6I | GCGC | 2 cut(s) | 756, 2254 |
| HinP1I | GCGC | 2 cut(s) | 756, 2254 |
| HincII | GTYRAC | 3 cut(s) | 397, 1567, 2350 |
| HindII | GTYRAC | 3 cut(s) | 397, 1567, 2350 |
| HindIII | AAGCTT | 5 cut(s) | 278, 1122, 2373, 2876, 4019 |
| HpaI | GTTAAC | 1 cut(s) | 2350 |
| HpaII | CCGG | 5 cut(s) | 218, 1668, 2120, 2714, 3959 |
| HphI | GGTGA | 4 cut(s) | 589, 1793, 2285, 4163 |
| Hpy166II | GTNNAC | 9 cut(s) | 397, 1333, 1567, 2350, 2665, 3735, 3917, 4319, 4409 |
| Hpy8I | GTNNAC | 9 cut(s) | 397, 1333, 1567, 2350, 2665, 3735, 3917, 4319, 4409 |
| Hpy99I | CGWCG | 1 cut(s) | 1616 |
| HpyAV | CCTTC | 8 cut(s) | 585, 832, 1081, 1925, 2061, 2474, 2994, 3659 |
| HpyCH4IV | ACGT | 9 cut(s) | 184, 408, 1614, 2360, 3292, 3925, 3947, 4224, 4332 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 286, 675, 932, 1868, 2334, 2545, 3564, 4027, 4088 |
| HpySE526I | ACGT | 9 cut(s) | 184, 408, 1614, 2360, 3292, 3925, 3947, 4224, 4332 |
| HspAI | GCGC | 2 cut(s) | 756, 2254 |
| Kpn2I | TCCGGA | 2 cut(s) | 2119, 2713 |
| KpnI | GGTACC | 1 cut(s) | 1461 |
| KspAI | GTTAAC | 1 cut(s) | 2350 |
| KspI | CCGCGG | 1 cut(s) | 4493 |
| LguI | GCTCTTC | 2 cut(s) | 1805, 3324 |
| LmnI | GCTCC | 6 cut(s) | 720, 1268, 1584, 2544, 2553, 3702 |
| Lsp1109I | GCAGC | 7 cut(s) | 15, 781, 1148, 1801, 1858, 2089, 3515 |
| LweI | GCATC | 9 cut(s) | 139, 1375, 1801, 2074, 2175, 2376, 2449, 3426, 4372 |
| MaeI | CTAG | 7 cut(s) | 1520, 1724, 3564, 3710, 4428, 4461, 4467 |
| MaeII | ACGT | 9 cut(s) | 184, 408, 1614, 2360, 3292, 3925, 3947, 4224, 4332 |
| MaeIII | GTNAC | 7 cut(s) | 595, 2486, 2928, 3179, 3461, 3763, 3943 |
| MflI | RGATCY | 9 cut(s) | 260, 663, 1018, 1755, 2242, 2365, 2629, 2647, 4001 |
| MhlI | GDGCHC | 9 cut(s) | 332, 375, 2541, 3043, 3126, 3503, 3699, 3737, 4188 |
| MlsI | TGGCCA | 2 cut(s) | 1109, 4365 |
| MluNI | TGGCCA | 2 cut(s) | 1109, 4365 |
| MlyI | GAGTC | 4 cut(s) | 612, 1395, 2737, 3199 |
| MmeI | TCCRAC | 3 cut(s) | 33, 838, 2343 |
| Mox20I | TGGCCA | 2 cut(s) | 1109, 4365 |
| Mph1103I | ATGCAT | 1 cut(s) | 2391 |
| MroI | TCCGGA | 2 cut(s) | 2119, 2713 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1323, 1791, 3546 |
| MscI | TGGCCA | 2 cut(s) | 1109, 4365 |
| MslI | CAYNNNNRTG | 5 cut(s) | 789, 1809, 2147, 2183, 2271 |
| Msp20I | TGGCCA | 2 cut(s) | 1109, 4365 |
| MspA1I | CMGCKG | 1 cut(s) | 4492 |
| MspCI | CTTAAG | 3 cut(s) | 2395, 3365, 3647 |
| MspI | CCGG | 5 cut(s) | 218, 1668, 2120, 2714, 3959 |
| MspR9I | CCNGG | 5 cut(s) | 219, 1668, 2247, 2551, 3960 |
| Mva1269I | GAATGC | 2 cut(s) | 92, 974 |
| MvaI | CCWGG | 2 cut(s) | 2247, 2551 |
| MvnI | CGCG | 4 cut(s) | 758, 2226, 4440, 4492 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 286, 675, 932, 1868, 2334, 2545, 3564, 4027, 4088 |
| NciI | CCSGG | 3 cut(s) | 219, 1668, 3960 |
| NcoI | CCATGG | 2 cut(s) | 2625, 3065 |
| NdeI | CATATG | 2 cut(s) | 2180, 2544 |
| NmuCI | GTSAC | 2 cut(s) | 595, 3763 |
| NotI | GCGGCCGC | 1 cut(s) | 4493 |
| NsiI | ATGCAT | 1 cut(s) | 2391 |
| NspI | RCATGY | 4 cut(s) | 995, 1031, 2058, 3915 |
| NspV | TTCGAA | 1 cut(s) | 1416 |
| OliI | CACNNNNGTG | 1 cut(s) | 2271 |
| PaeR7I | CTCGAG | 2 cut(s) | 1692, 3437 |
| PaqCI | CACCTGC | 1 cut(s) | 1846 |
| PciI | ACATGT | 2 cut(s) | 991, 1027 |
| PciSI | GCTCTTC | 2 cut(s) | 1805, 3324 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3053 |
| PctI | GAATGC | 2 cut(s) | 92, 974 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1323, 1791, 3546 |
| PflFI | GACNNNGTC | 1 cut(s) | 47 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2206 |
| PfoI | TCCNGGA | 3 cut(s) | 217, 2245, 3958 |
| PleI | GAGTC | 4 cut(s) | 612, 1395, 2736, 3198 |
| PmaCI | CACGTG | 2 cut(s) | 409, 4225 |
| PmlI | CACGTG | 2 cut(s) | 409, 4225 |
| PpsI | GAGTC | 4 cut(s) | 612, 1395, 2736, 3198 |
| Ppu21I | YACGTR | 2 cut(s) | 409, 4225 |
| PscI | ACATGT | 2 cut(s) | 991, 1027 |
| PsiI | TTATAA | 2 cut(s) | 1053, 1685 |
| Psp124BI | GAGCTC | 1 cut(s) | 2541 |
| Psp1406I | AACGTT | 4 cut(s) | 184, 2360, 3925, 3947 |
| Psp6I | CCWGG | 2 cut(s) | 2245, 2549 |
| PspCI | CACGTG | 2 cut(s) | 409, 4225 |
| PspEI | GGTNACC | 2 cut(s) | 595, 3179 |
| PspGI | CCWGG | 2 cut(s) | 2245, 2549 |
| PspOMI | GGGCCC | 1 cut(s) | 3039 |
| PspPI | GGNCC | 7 cut(s) | 531, 635, 860, 1664, 3039, 3040, 4201 |
| PstI | CTGCAG | 1 cut(s) | 1876 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1814, 3767 |
| PsuI | RGATCY | 9 cut(s) | 260, 663, 1018, 1755, 2242, 2365, 2629, 2647, 4001 |
| PsyI | GACNNNGTC | 1 cut(s) | 47 |
| RsaI | GTAC | 7 cut(s) | 1032, 1459, 1588, 1828, 2236, 4060, 4465 |
| RsaNI | GTAC | 7 cut(s) | 1031, 1458, 1587, 1827, 2235, 4059, 4464 |
| RseI | CAYNNNNRTG | 5 cut(s) | 789, 1809, 2147, 2183, 2271 |
| SacI | GAGCTC | 1 cut(s) | 2541 |
| SacII | CCGCGG | 1 cut(s) | 4493 |
| SapI | GCTCTTC | 2 cut(s) | 1805, 3324 |
| Sau96I | GGNCC | 7 cut(s) | 531, 635, 860, 1664, 3039, 3040, 4201 |
| ScaI | AGTACT | 2 cut(s) | 2236, 4465 |
| SchI | GAGTC | 4 cut(s) | 612, 1395, 2737, 3199 |
| ScrFI | CCNGG | 5 cut(s) | 219, 1668, 2247, 2551, 3960 |
| SduI | GDGCHC | 9 cut(s) | 332, 375, 2541, 3043, 3126, 3503, 3699, 3737, 4188 |
| SfaNI | GCATC | 9 cut(s) | 139, 1375, 1801, 2074, 2175, 2376, 2449, 3426, 4372 |
| SfcI | CTRYAG | 5 cut(s) | 1338, 1554, 1872, 3250, 4159 |
| Sfr274I | CTCGAG | 2 cut(s) | 1692, 3437 |
| Sfr303I | CCGCGG | 1 cut(s) | 4493 |
| SfuI | TTCGAA | 1 cut(s) | 1416 |
| SgrBI | CCGCGG | 1 cut(s) | 4493 |
| SinI | GGWCC | 2 cut(s) | 635, 860 |
| SlaI | CTCGAG | 2 cut(s) | 1692, 3437 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 789, 1809, 2147, 2183, 2271 |
| SpeI | ACTAGT | 3 cut(s) | 1723, 4460, 4466 |
| SspI | AATATT | 3 cut(s) | 2501, 2806, 4015 |
| SspMI | CTAG | 7 cut(s) | 1520, 1724, 3564, 3710, 4428, 4461, 4467 |
| SstI | GAGCTC | 1 cut(s) | 2541 |
| StyD4I | CCNGG | 5 cut(s) | 217, 1666, 2245, 2549, 3958 |
| StyI | CCWWGG | 4 cut(s) | 639, 2625, 3065, 4366 |
| TaiI | ACGT | 9 cut(s) | 187, 411, 1617, 2363, 3295, 3928, 3950, 4227, 4335 |
| TaqII | GACCGA | 1 cut(s) | 1058 |
| TatI | WGTACW | 3 cut(s) | 1826, 2234, 4463 |
| TauI | GCSGC | 5 cut(s) | 536, 3679, 4443, 4495, 4498 |
| TscAI | CASTG | 8 cut(s) | 43, 296, 352, 1430, 3126, 3699, 3768, 4037 |
| TseFI | GTSAC | 2 cut(s) | 595, 3763 |
| TseI | GCWGC | 7 cut(s) | 28, 794, 1136, 1814, 1871, 2102, 3528 |
| Tsp45I | GTSAC | 2 cut(s) | 595, 3763 |
| TspGWI | ACGGA | 7 cut(s) | 269, 889, 1112, 2398, 2844, 3887, 4010 |
| TspRI | CASTG | 8 cut(s) | 43, 296, 352, 1430, 3126, 3699, 3768, 4037 |
| Tth111I | GACNNNGTC | 1 cut(s) | 47 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2206 |
| Vha464I | CTTAAG | 3 cut(s) | 2395, 3365, 3647 |
| VneI | GTGCAC | 1 cut(s) | 3733 |
| VpaK11BI | GGWCC | 2 cut(s) | 635, 860 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 589, 4448 |
| XbaI | TCTAGA | 1 cut(s) | 3709 |
| XceI | RCATGY | 4 cut(s) | 995, 1031, 2058, 3915 |
| XhoI | CTCGAG | 2 cut(s) | 1692, 3437 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1323, 1791, 3546 |
| XspI | CTAG | 7 cut(s) | 1520, 1724, 3564, 3710, 4428, 4461, 4467 |
| ZrmI | AGTACT | 2 cut(s) | 2236, 4465 |
| Zsp2I | ATGCAT | 1 cut(s) | 2391 |