TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C-JID | PF20160 | 2 - 139 | 4.5e-14 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 263 |
| AfaI | GTAC | 1 cut(s) | 314 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 369 |
| AgsI | TTSAA | 4 cut(s) | 103, 307, 416, 547 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 309, 341, 408, 440 |
| AluBI | AGCT | 3 cut(s) | 40, 215, 543 |
| AluI | AGCT | 3 cut(s) | 40, 215, 543 |
| Alw26I | GTCTC | 2 cut(s) | 394, 493 |
| Ama87I | CYCGRG | 1 cut(s) | 405 |
| AoxI | GGCC | 1 cut(s) | 291 |
| ApoI | RAATTY | 1 cut(s) | 263 |
| AsuC2I | CCSGG | 2 cut(s) | 406, 407 |
| AsuHPI | GGTGA | 1 cut(s) | 385 |
| AvaI | CYCGRG | 1 cut(s) | 405 |
| BccI | CCATC | 1 cut(s) | 165 |
| BcnI | CCSGG | 2 cut(s) | 406, 407 |
| BcoDI | GTCTC | 2 cut(s) | 394, 493 |
| Bme1390I | CCNGG | 2 cut(s) | 406, 407 |
| BmeT110I | CYCGRG | 1 cut(s) | 405 |
| BmiI | GGNNCC | 1 cut(s) | 456 |
| BmrFI | CCNGG | 2 cut(s) | 406, 407 |
| BmsI | GCATC | 1 cut(s) | 293 |
| BpuMI | CCSGG | 2 cut(s) | 406, 407 |
| BsaBI | GATNNNNATC | 1 cut(s) | 32 |
| BsaJI | CCNNGG | 3 cut(s) | 70, 288, 405 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 369 |
| Bse8I | GATNNNNATC | 1 cut(s) | 32 |
| BseDI | CCNNGG | 3 cut(s) | 70, 288, 405 |
| BseGI | GGATG | 2 cut(s) | 26, 284 |
| BseJI | GATNNNNATC | 1 cut(s) | 32 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 369 |
| BseMII | CTCAG | 1 cut(s) | 535 |
| BseRI | GAGGAG | 1 cut(s) | 36 |
| BshFI | GGCC | 1 cut(s) | 293 |
| BsiHKCI | CYCGRG | 1 cut(s) | 405 |
| BsiSI | CCGG | 1 cut(s) | 406 |
| BslFI | GGGAC | 1 cut(s) | 521 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 369 |
| BsmAI | GTCTC | 2 cut(s) | 394, 493 |
| BsmFI | GGGAC | 1 cut(s) | 521 |
| BsmI | GAATGC | 1 cut(s) | 98 |
| BsnI | GGCC | 1 cut(s) | 293 |
| BsoBI | CYCGRG | 1 cut(s) | 405 |
| Bsp143I | GATC | 1 cut(s) | 232 |
| BspANI | GGCC | 1 cut(s) | 293 |
| BspCNI | CTCAG | 1 cut(s) | 534 |
| BspLI | GGNNCC | 1 cut(s) | 456 |
| BssECI | CCNNGG | 3 cut(s) | 70, 288, 405 |
| BssMI | GATC | 1 cut(s) | 232 |
| Bst4CI | ACNGT | 1 cut(s) | 367 |
| BstC8I | GCNNGC | 1 cut(s) | 541 |
| BstDEI | CTNAG | 2 cut(s) | 495, 521 |
| BstF5I | GGATG | 2 cut(s) | 26, 284 |
| BstKTI | GATC | 1 cut(s) | 235 |
| BstMAI | GTCTC | 2 cut(s) | 394, 493 |
| BstMBI | GATC | 1 cut(s) | 232 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 290 |
| BstSCI | CCNGG | 2 cut(s) | 404, 405 |
| BsuRI | GGCC | 1 cut(s) | 293 |
| BtsCI | GGATG | 2 cut(s) | 26, 284 |
| BtsIMutI | CAGTG | 2 cut(s) | 363, 529 |
| Cac8I | GCNNGC | 1 cut(s) | 541 |
| Cfr9I | CCCGGG | 1 cut(s) | 405 |
| Csp6I | GTAC | 1 cut(s) | 313 |
| CviAII | CATG | 2 cut(s) | 236, 604 |
| CviJI | RGCY | 7 cut(s) | 40, 66, 194, 207, 215, 293, 543 |
| CviKI_1 | RGCY | 7 cut(s) | 40, 66, 194, 207, 215, 293, 543 |
| CviQI | GTAC | 1 cut(s) | 313 |
| DdeI | CTNAG | 2 cut(s) | 495, 521 |
| DpnI | GATC | 1 cut(s) | 234 |
| DpnII | GATC | 1 cut(s) | 232 |
| Eco147I | AGGCCT | 1 cut(s) | 293 |
| Eco32I | GATATC | 1 cut(s) | 481 |
| Eco88I | CYCGRG | 1 cut(s) | 405 |
| EcoRV | GATATC | 1 cut(s) | 481 |
| EcoT22I | ATGCAT | 1 cut(s) | 89 |
| FaeI | CATG | 2 cut(s) | 239, 607 |
| FaiI | YATR | 8 cut(s) | 85, 111, 203, 237, 402, 452, 558, 605 |
| FaqI | GGGAC | 1 cut(s) | 521 |
| FatI | CATG | 2 cut(s) | 235, 603 |
| FokI | GGATG | 2 cut(s) | 33, 271 |
| HaeIII | GGCC | 1 cut(s) | 293 |
| HapII | CCGG | 1 cut(s) | 406 |
| Hin1II | CATG | 2 cut(s) | 239, 607 |
| HindIII | AAGCTT | 2 cut(s) | 38, 541 |
| HinfI | GANTC | 2 cut(s) | 387, 512 |
| HpaII | CCGG | 1 cut(s) | 406 |
| HphI | GGTGA | 1 cut(s) | 385 |
| Hpy188I | TCNGA | 4 cut(s) | 232, 289, 330, 517 |
| Hpy188III | TCNNGA | 1 cut(s) | 176 |
| HpyCH4III | ACNGT | 1 cut(s) | 367 |
| HpyCH4V | TGCA | 4 cut(s) | 87, 98, 284, 539 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 290 |
| HpyF3I | CTNAG | 2 cut(s) | 495, 521 |
| Hsp92II | CATG | 2 cut(s) | 239, 607 |
| Kzo9I | GATC | 1 cut(s) | 232 |
| LpnPI | CCDG | 3 cut(s) | 225, 419, 590 |
| LweI | GCATC | 1 cut(s) | 293 |
| MaeIII | GTNAC | 2 cut(s) | 74, 173 |
| MalI | GATC | 1 cut(s) | 234 |
| MboI | GATC | 1 cut(s) | 232 |
| MboII | GAAGA | 4 cut(s) | 452, 485, 488, 563 |
| MluCI | AATT | 3 cut(s) | 130, 226, 263 |
| MlyI | GAGTC | 2 cut(s) | 396, 521 |
| Mph1103I | ATGCAT | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 406 |
| MspR9I | CCNGG | 2 cut(s) | 406, 407 |
| Mva1269I | GAATGC | 1 cut(s) | 98 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 290 |
| NciI | CCSGG | 2 cut(s) | 406, 407 |
| NdeII | GATC | 1 cut(s) | 232 |
| NlaIII | CATG | 2 cut(s) | 239, 607 |
| NlaIV | GGNNCC | 1 cut(s) | 456 |
| NmuCI | GTSAC | 1 cut(s) | 173 |
| NsiI | ATGCAT | 1 cut(s) | 89 |
| PceI | AGGCCT | 1 cut(s) | 293 |
| PctI | GAATGC | 1 cut(s) | 98 |
| PleI | GAGTC | 2 cut(s) | 395, 520 |
| PpsI | GAGTC | 2 cut(s) | 395, 520 |
| PspN4I | GGNNCC | 1 cut(s) | 456 |
| RsaI | GTAC | 1 cut(s) | 314 |
| RsaNI | GTAC | 1 cut(s) | 313 |
| Sau3AI | GATC | 1 cut(s) | 232 |
| SchI | GAGTC | 2 cut(s) | 396, 521 |
| ScrFI | CCNGG | 2 cut(s) | 406, 407 |
| SetI | ASST | 6 cut(s) | 8, 42, 217, 383, 545, 574 |
| SfaNI | GCATC | 1 cut(s) | 293 |
| SmaI | CCCGGG | 1 cut(s) | 407 |
| Sse9I | AATT | 3 cut(s) | 130, 226, 263 |
| SseBI | AGGCCT | 1 cut(s) | 293 |
| SspI | AATATT | 1 cut(s) | 322 |
| StuI | AGGCCT | 1 cut(s) | 293 |
| StyD4I | CCNGG | 2 cut(s) | 404, 405 |
| TaaI | ACNGT | 1 cut(s) | 367 |
| TaqI | TCGA | 2 cut(s) | 26, 271 |
| TasI | AATT | 3 cut(s) | 130, 226, 263 |
| TscAI | CASTG | 2 cut(s) | 370, 529 |
| TseFI | GTSAC | 1 cut(s) | 173 |
| Tsp45I | GTSAC | 1 cut(s) | 173 |
| TspDTI | ATGAA | 2 cut(s) | 453, 459 |
| TspGWI | ACGGA | 1 cut(s) | 188 |
| TspMI | CCCGGG | 1 cut(s) | 405 |
| TspRI | CASTG | 2 cut(s) | 370, 529 |
| XapI | RAATTY | 1 cut(s) | 263 |
| XmaI | CCCGGG | 1 cut(s) | 405 |
| Zsp2I | ATGCAT | 1 cut(s) | 89 |