Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Reverse (-)

31286348 .. 31287310

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1240700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAAGAAGCTGATCGCTGCAGCAGCTGCTCCAGCAACAGCTACATGCCAGACACCAGGCAGCAGCAGCCGTTGCTAAAGAGGATGAAGAGGACGCCGTCCCGAAACATGGAGGATCTGTGGAAGGCGGCCTTTCCTGTTGGAACAGCATGGGATGATCAATTGGAGTCGGTTTACAACCACGAACACTCCCAATCCAGGCCCTGGGATTTCTCAAATCTCGAACAAGCATTCGAAGACGGGGGAAAGTTCTGTCCTGAAATTATTGGAGAAAAGAACAAAGTGTATCTGTTTGGTACAACAGAAGAAGCTCGTGATAGTGATGATAGAGTTGTTTTGATCCCTCTAGTGTTGGCTATTGTATCGCCTTCCCCGCCTTCCCATGATCTCGGTTTCTTCAAGTCCAAGGCACCCGGGGATGGTGGCGACGAAGATTTTATTAGGATTCCGATGAAAAAGATGAAGATGGACTGGCTTCCGTACATTCCTCTGGACAAGAGAAACACACAAGTTCACGAGATCGCAATGAAGAAATCTCCTCCTAATATATTTGTCTTGGGCTGTACACAAAGACGGGCTGCTTTGAAACGCATCAATGAAGACCGTTTCATGAAATTCCAGTACTCAGTGCCTTGTTTAGATTACGATCACAAGGCTGTCAAGGAAGAGGAGGAAAATCGTTCTGGTTACGAAACGAAGTTGAATTGGCTTAAGGAGTTCTTACTTGAACAGGTGATACAAGAGGATGAATTTTTAGCTGCGGAGAAAAAGGAACCCTTGGTAAGGTATGTGAGGGAGCAACTATTGGAAGCGAGGAGGGAGGCGAAAAATCGGCAGAGAATTGCTAGGGACAAAAAGATTTACAAGTTCTACCCCCTGCAAACACCGGATTTTCCTCGTCTCACTGTCCAAAGGTCTCCATACATCAGCTTCTACCGCCTCGACGCTCATGAGGTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

37.61

Weight (kDa)

6.63

Isoelectric Point (pI)

61.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	409
AccB7I	CCANNNNNTGG	1 cut(s)	204
AciI	CCGC	4 cut(s)	128, 374, 761, 937
AclWI	GGATC	2 cut(s)	123, 334
AcsI	RAATTY	2 cut(s)	614, 749
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	4 cut(s)	298, 482, 565, 623
AfiI	CCNNNNNNNGG	5 cut(s)	109, 198, 204, 419, 783
AflII	CTTAAG	1 cut(s)	710
AgsI	TTSAA	4 cut(s)	400, 586, 703, 728
AjnI	CCWGG	3 cut(s)	56, 197, 203
AluBI	AGCT	6 cut(s)	11, 27, 42, 311, 758, 930
AluI	AGCT	6 cut(s)	11, 27, 42, 311, 758, 930
Alw26I	GTCTC	2 cut(s)	905, 921
AlwI	GGATC	2 cut(s)	123, 334
AlwNI	CAGNNNCTG	2 cut(s)	27, 204
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	2 cut(s)	129, 200
ApeKI	GCWGC	9 cut(s)	18, 21, 24, 27, 61, 64, 67, 578, 758
ApoI	RAATTY	2 cut(s)	614, 749
AspS9I	GGNCC	1 cut(s)	201
AsuC2I	CCSGG	2 cut(s)	414, 415
AsuHPI	GGTGA	1 cut(s)	745
AsuII	TTCGAA	1 cut(s)	234
AvaI	CYCGRG	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	409
BauI	CACGAG	2 cut(s)	312, 515
BbsI	GAAGAC	2 cut(s)	243, 606
BbvI	GCAGC	9 cut(s)	5, 14, 33, 36, 73, 76, 79, 565, 745
BccI	CCATC	2 cut(s)	413, 460
BceAI	ACGGC	2 cut(s)	55, 82
BciT130I	CCWGG	3 cut(s)	58, 199, 205
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	2 cut(s)	414, 415
BcoDI	GTCTC	2 cut(s)	905, 921
BfaI	CTAG	2 cut(s)	347, 846
BfmI	CTRYAG	1 cut(s)	19
BfrI	CTTAAG	1 cut(s)	710
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	5 cut(s)	58, 199, 205, 414, 415
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	2 cut(s)	411, 774
BmrFI	CCNGG	5 cut(s)	58, 199, 205, 414, 415
BmsI	GCATC	1 cut(s)	600
BpiI	GAAGAC	2 cut(s)	243, 606
BpmI	CTGGAG	1 cut(s)	16
Bpu14I	TTCGAA	1 cut(s)	234
BpuMI	CCSGG	2 cut(s)	414, 415
BsaBI	GATNNNNATC	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	921
BsaJI	CCNNGG	6 cut(s)	203, 204, 405, 413, 414, 777
BsaWI	WCCGGW	1 cut(s)	886
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 173, 203
Bsc4I	CCNNNNNNNGG	5 cut(s)	109, 198, 204, 419, 783
Bse1I	ACTGG	2 cut(s)	476, 619
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	3 cut(s)	58, 199, 205
BseDI	CCNNGG	6 cut(s)	203, 204, 405, 413, 414, 777
BseGI	GGATG	4 cut(s)	90, 160, 424, 751
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	5 cut(s)	109, 198, 204, 419, 783
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	2 cut(s)	476, 619
BseRI	GAGGAG	3 cut(s)	528, 683, 829
BseXI	GCAGC	9 cut(s)	5, 14, 33, 36, 73, 76, 79, 565, 745
BshFI	GGCC	2 cut(s)	131, 202
BshNI	GGYRCC	1 cut(s)	409
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	2 cut(s)	414, 887
BslFI	GGGAC	2 cut(s)	85, 863
BslI	CCNNNNNNNGG	5 cut(s)	109, 198, 204, 419, 783
BsmAI	GTCTC	2 cut(s)	905, 921
BsmBI	CGTCTC	1 cut(s)	905
BsmFI	GGGAC	2 cut(s)	85, 863
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	131, 202
Bso31I	GGTCTC	1 cut(s)	921
BsoBI	CYCGRG	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	234
Bsp1407I	TGTACA	1 cut(s)	563
Bsp143I	GATC	7 cut(s)	13, 115, 157, 339, 385, 519, 646
BspACI	CCGC	4 cut(s)	128, 374, 761, 937
BspANI	GGCC	2 cut(s)	131, 202
BspCNI	CTCAG	1 cut(s)	638
BspHI	TCATGA	2 cut(s)	609, 949
BspLI	GGNNCC	2 cut(s)	411, 774
BspMAI	CTGCAG	1 cut(s)	23
BspPI	GGATC	2 cut(s)	123, 334
BspT104I	TTCGAA	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	409
BspTI	CTTAAG	1 cut(s)	710
BspTNI	GGTCTC	1 cut(s)	921
BsrDI	GCAATG	1 cut(s)	531
BsrGI	TGTACA	1 cut(s)	563
BsrI	ACTGG	2 cut(s)	476, 619
BssECI	CCNNGG	6 cut(s)	203, 204, 405, 413, 414, 777
BssMI	GATC	7 cut(s)	13, 115, 157, 339, 385, 519, 646
BssNI	GRCGYC	1 cut(s)	95
BssSI	CACGAG	2 cut(s)	312, 515
BssT1I	CCWWGG	2 cut(s)	405, 777
Bst2BI	CACGAG	2 cut(s)	312, 515
Bst2UI	CCWGG	3 cut(s)	58, 199, 205
Bst4CI	ACNGT	2 cut(s)	605, 907
Bst6I	CTCTTC	2 cut(s)	83, 660
BstACI	GRCGYC	1 cut(s)	95
BstAFI	CTTAAG	1 cut(s)	710
BstAPI	GCANNNNNTGC	2 cut(s)	27, 73
BstAUI	TGTACA	1 cut(s)	563
BstBI	TTCGAA	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	625
BstENI	CCTNNNNNAGG	1 cut(s)	781
BstF5I	GGATG	4 cut(s)	90, 160, 424, 751
BstKTI	GATC	7 cut(s)	16, 118, 160, 342, 388, 522, 649
BstMAI	GTCTC	2 cut(s)	905, 921
BstMBI	GATC	7 cut(s)	13, 115, 157, 339, 385, 519, 646
BstMWI	GCNNNNNNNGC	7 cut(s)	24, 27, 33, 67, 73, 373, 936
BstNI	CCWGG	3 cut(s)	58, 199, 205
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	5 cut(s)	56, 197, 203, 412, 413
BstSFI	CTRYAG	1 cut(s)	19
BstV1I	GCAGC	9 cut(s)	5, 14, 33, 36, 73, 76, 79, 565, 745
BstV2I	GAAGAC	2 cut(s)	243, 606
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	131, 202
BtsCI	GGATG	4 cut(s)	90, 160, 424, 751
BtsIMutI	CAGTG	2 cut(s)	633, 903
CaiI	CAGNNNCTG	2 cut(s)	27, 204
CciI	TCATGA	2 cut(s)	609, 949
Cfr13I	GGNCC	1 cut(s)	201
Cfr9I	CCCGGG	1 cut(s)	413
CseI	GACGC	2 cut(s)	103, 953
Csp6I	GTAC	4 cut(s)	297, 481, 564, 622
CviAII	CATG	6 cut(s)	46, 109, 150, 383, 610, 950
CviQI	GTAC	4 cut(s)	297, 481, 564, 622
DdeI	CTNAG	1 cut(s)	625
DpnI	GATC	7 cut(s)	15, 117, 159, 341, 387, 521, 648
DpnII	GATC	7 cut(s)	13, 115, 157, 339, 385, 519, 646
Eam1104I	CTCTTC	2 cut(s)	83, 660
EarI	CTCTTC	2 cut(s)	83, 660
Eco130I	CCWWGG	2 cut(s)	405, 777
Eco31I	GGTCTC	1 cut(s)	921
Eco88I	CYCGRG	1 cut(s)	413
EcoNI	CCTNNNNNAGG	1 cut(s)	781
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRII	CCWGG	3 cut(s)	56, 197, 203
EcoT14I	CCWWGG	2 cut(s)	405, 777
ErhI	CCWWGG	2 cut(s)	405, 777
Esp3I	CGTCTC	1 cut(s)	905
FaeI	CATG	6 cut(s)	49, 112, 153, 386, 613, 953
FaiI	YATR	9 cut(s)	47, 110, 151, 384, 548, 611, 789, 922, 951
FalI	AAGNNNNNCTT	6 cut(s)	116, 148, 704, 736, 761, 793
FaqI	GGGAC	2 cut(s)	85, 863
FatI	CATG	6 cut(s)	45, 108, 149, 382, 609, 949
FauI	CCCGC	1 cut(s)	381
FbaI	TGATCA	1 cut(s)	157
FokI	GGATG	4 cut(s)	97, 167, 431, 758
FspBI	CTAG	2 cut(s)	347, 846
GsuI	CTGGAG	1 cut(s)	16
HaeIII	GGCC	2 cut(s)	131, 202
HapII	CCGG	2 cut(s)	414, 887
HgaI	GACGC	2 cut(s)	103, 953
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	6 cut(s)	49, 112, 153, 386, 613, 953
HinfI	GANTC	2 cut(s)	167, 445
HpaII	CCGG	2 cut(s)	414, 887
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	3 cut(s)	175, 514, 566
Hpy188I	TCNGA	2 cut(s)	450, 962
Hpy188III	TCNNGA	8 cut(s)	102, 221, 257, 314, 491, 515, 610, 950
Hpy8I	GTNNAC	3 cut(s)	175, 514, 566
Hpy99I	CGWCG	2 cut(s)	431, 947
HpyAV	CCTTC	3 cut(s)	118, 378, 387
HpyCH4III	ACNGT	2 cut(s)	605, 907
HpyCH4V	TGCA	2 cut(s)	21, 880
HpyF10VI	GCNNNNNNNGC	7 cut(s)	24, 27, 33, 67, 73, 373, 936
HpyF3I	CTNAG	1 cut(s)	625
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	6 cut(s)	49, 112, 153, 386, 613, 953
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	7 cut(s)	13, 115, 157, 339, 385, 519, 646
LmnI	GCTCC	2 cut(s)	35, 796
Lsp1109I	GCAGC	9 cut(s)	5, 14, 33, 36, 73, 76, 79, 565, 745
LweI	GCATC	1 cut(s)	600
MaeI	CTAG	2 cut(s)	347, 846
MaeIII	GTNAC	1 cut(s)	686
MalI	GATC	7 cut(s)	15, 117, 159, 341, 387, 521, 648
MboI	GATC	7 cut(s)	13, 115, 157, 339, 385, 519, 646
MfeI	CAATTG	1 cut(s)	161
MflI	RGATCY	1 cut(s)	115
MluCI	AATT	6 cut(s)	161, 261, 614, 703, 749, 840
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	121
MseI	TTAA	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	27
MspCI	CTTAAG	1 cut(s)	710
MspI	CCGG	2 cut(s)	414, 887
MspR9I	CCNGG	5 cut(s)	58, 199, 205, 414, 415
MunI	CAATTG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	3 cut(s)	58, 199, 205
MwoI	GCNNNNNNNGC	7 cut(s)	24, 27, 33, 67, 73, 373, 936
NciI	CCSGG	2 cut(s)	414, 415
NdeII	GATC	7 cut(s)	13, 115, 157, 339, 385, 519, 646
NlaIII	CATG	6 cut(s)	49, 112, 153, 386, 613, 953
NlaIV	GGNNCC	2 cut(s)	411, 774
NspI	RCATGY	1 cut(s)	49
NspV	TTCGAA	1 cut(s)	234
PagI	TCATGA	2 cut(s)	609, 949
PasI	CCCWGGG	1 cut(s)	204
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	445
PflFI	GACNNNGTC	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	204
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp6I	CCWGG	3 cut(s)	56, 197, 203
PspGI	CCWGG	3 cut(s)	56, 197, 203
PspN4I	GGNNCC	2 cut(s)	411, 774
PspPI	GGNCC	1 cut(s)	201
PsrI	GAACNNNNNNTAC	2 cut(s)	720, 752
PstI	CTGCAG	1 cut(s)	23
PstNI	CAGNNNCTG	2 cut(s)	27, 204
PsuI	RGATCY	1 cut(s)	115
PsyI	GACNNNGTC	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	27
RsaI	GTAC	4 cut(s)	298, 482, 565, 623
RsaNI	GTAC	4 cut(s)	297, 481, 564, 622
SaqAI	TTAA	1 cut(s)	711
Sau3AI	GATC	7 cut(s)	13, 115, 157, 339, 385, 519, 646
Sau96I	GGNCC	1 cut(s)	201
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	5 cut(s)	58, 199, 205, 414, 415
SfaNI	GCATC	1 cut(s)	600
SfcI	CTRYAG	1 cut(s)	19
SfuI	TTCGAA	1 cut(s)	234
SmaI	CCCGGG	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	6 cut(s)	161, 261, 614, 703, 749, 840
SsiI	CCGC	4 cut(s)	128, 374, 761, 937
SspMI	CTAG	2 cut(s)	347, 846
StyD4I	CCNGG	5 cut(s)	56, 197, 203, 412, 413
StyI	CCWWGG	2 cut(s)	405, 777
TaaI	ACNGT	2 cut(s)	605, 907
TaqI	TCGA	3 cut(s)	222, 234, 942
TasI	AATT	6 cut(s)	161, 261, 614, 703, 749, 840
TatI	WGTACW	2 cut(s)	563, 621
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	1 cut(s)	711
Tru9I	TTAA	1 cut(s)	711
TscAI	CASTG	2 cut(s)	633, 910
TseI	GCWGC	9 cut(s)	18, 21, 24, 27, 61, 64, 67, 578, 758
TspDTI	ATGAA	8 cut(s)	101, 467, 476, 542, 598, 612, 626, 762
TspGWI	ACGGA	1 cut(s)	468
TspMI	CCCGGG	1 cut(s)	413
TspRI	CASTG	2 cut(s)	633, 910
Tth111I	GACNNNGTC	1 cut(s)	97
Van91I	CCANNNNNTGG	1 cut(s)	204
Vha464I	CTTAAG	1 cut(s)	710
XagI	CCTNNNNNAGG	1 cut(s)	781
XapI	RAATTY	2 cut(s)	614, 749
XceI	RCATGY	1 cut(s)	49
XmaI	CCCGGG	1 cut(s)	413
XspI	CTAG	2 cut(s)	347, 846
ZrmI	AGTACT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.