Rmu_sc0009360.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009360.1
OG0000661
Physical Location & Seq
Forward (+)
46656 .. 47573
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009360.1_g000014.1.cds

Sequence Viewer

Length: 918 bp
atgaagagaaaggctttgatggaactagatgttgaaatcgcagctcagccaccgcgaaaacggttcaagccccgacccaccgagtacttggaggaaccccggagcctggagagtctatggaaggctgtgtttcccgctgggacaccgaggtctgttttggactcaccactataccattctttcaagtgggatttctcgaatcttgaaggagcactcgaagaagggggaaagctgtacaagaacatagtctatctattcggctccacggaggaagccatggttaagagagaagtggttgctttgatccctgtggtggtggctgttgtttcggcttatgcgccttccaatgagcgtggacttgttttaagtgagggaaaagtggaagagataattccgataaagagattgaagatagactgggctctgtatgttcctttggacaagagagtagacaaagaagggcctgaaatctttgtcttgagctgcaagcaaagaagggccgctctcaaacacaaaaatgtcaagggaaacagtgatctattgaagtttgaatacgccgtgccttatttggatccagcggtacaagtaatgtgtcatgaagttcatgttcaggaggacgaggaggagtactttagtgctaatgatgatgagctggaggagttgtacttcagtgttgacgatgagaaccaggtgatagaagaagatgacgaaaaggatgtgaaggtggaagaagaagcaaagggagaaaatattgatcttggagttggggaaggcggccggagaagaagtgttgagaatataatgaagatgaggatttacaagttctatccggtacaaacaccggatactcccgacatatctgagcttcagaatgcgtttgtcaacaggtactatggcactgctcatgagattctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

35.0

Weight (kDa)

4.91

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 148
AccBSI CCGCTC 1 cut(s) 503
AccI GTMKAC 1 cut(s) 450
AccII CGCG 1 cut(s) 55
AciI CCGC 5 cut(s) 53, 135, 501, 578, 774
AclWI GGATC 3 cut(s) 298, 566, 579
AcoI YGGCCR 1 cut(s) 775
AcuI CTGAAG 2 cut(s) 652, 851
AfaI GTAC 7 cut(s) 86, 236, 582, 629, 665, 834, 890
AfiI CCNNNNNNNGG 2 cut(s) 106, 313
AgsI TTSAA 7 cut(s) 35, 67, 184, 206, 409, 544, 551
AjnI CCWGG 2 cut(s) 105, 687
AluBI AGCT 5 cut(s) 44, 232, 483, 652, 865
AluI AGCT 5 cut(s) 44, 232, 483, 652, 865
Alw21I GWGCWC 1 cut(s) 214
AlwI GGATC 3 cut(s) 298, 566, 579
AoxI GGCC 3 cut(s) 461, 498, 775
ApeKI GCWGC 2 cut(s) 41, 483
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 461, 498
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 156, 703
BamHI GGATCC 1 cut(s) 571
BanII GRGCYC 1 cut(s) 424
BarI GAAGNNNNNNTAC 2 cut(s) 536, 568
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 2 cut(s) 53, 470
BccI CCATC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 542
BciT130I CCWGG 2 cut(s) 107, 689
BciVI GTATCC 1 cut(s) 838
BcnI CCSGG 1 cut(s) 100
BfaI CTAG 1 cut(s) 26
BfuI GTATCC 1 cut(s) 838
BisI GCNGC 4 cut(s) 42, 484, 501, 775
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 4 cut(s) 43, 485, 502, 776
BmcAI AGTACT 2 cut(s) 86, 629
Bme1390I CCNGG 3 cut(s) 100, 107, 689
BmgT120I GGNCC 2 cut(s) 461, 498
BmiI GGNNCC 4 cut(s) 96, 104, 262, 573
BmrFI CCNGG 3 cut(s) 100, 107, 689
BmrI ACTGGG 1 cut(s) 427
BmuI ACTGGG 1 cut(s) 427
BpmI CTGGAG 2 cut(s) 128, 674
Bpu1102I GCTNAGC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 499
BpuMI CCSGG 1 cut(s) 100
BsaJI CCNNGG 4 cut(s) 98, 146, 264, 276
BsaWI WCCGGW 2 cut(s) 829, 841
BsaXI ACNNNNNCTCC 4 cut(s) 647, 677, 772, 802
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 313
Bse1I ACTGG 1 cut(s) 422
BseBI CCWGG 2 cut(s) 107, 689
BseDI CCNNGG 4 cut(s) 98, 146, 264, 276
BseGI GGATG 1 cut(s) 721
BseLI CCNNNNNNNGG 2 cut(s) 106, 313
BseMII CTCAG 2 cut(s) 59, 852
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 3 cut(s) 635, 638, 671
BseX3I CGGCCG 1 cut(s) 775
BseXI GCAGC 2 cut(s) 53, 470
BseYI CCCAGC 1 cut(s) 137
Bsh1236I CGCG 1 cut(s) 55
Bsh1285I CGRYCG 1 cut(s) 778
BshFI GGCC 3 cut(s) 463, 500, 777
BsiEI CGRYCG 1 cut(s) 778
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 4 cut(s) 100, 778, 830, 842
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 2 cut(s) 106, 313
BsmFI GGGAC 1 cut(s) 154
BsmI GAATGC 1 cut(s) 877
BsnI GGCC 3 cut(s) 463, 500, 777
Bsp1286I GDGCHC 2 cut(s) 214, 424
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 4 cut(s) 303, 535, 571, 754
Bsp1720I GCTNAGC 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 5 cut(s) 53, 135, 501, 578, 774
BspANI GGCC 3 cut(s) 463, 500, 777
BspCNI CTCAG 2 cut(s) 58, 853
BspFNI CGCG 1 cut(s) 55
BspHI TCATGA 2 cut(s) 595, 904
BspLI GGNNCC 4 cut(s) 96, 104, 262, 573
BspPI GGATC 3 cut(s) 298, 566, 579
BsrBI CCGCTC 1 cut(s) 503
BsrGI TGTACA 1 cut(s) 234
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 4 cut(s) 98, 146, 264, 276
BssMI GATC 4 cut(s) 303, 535, 571, 754
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 107, 689
Bst4CI ACNGT 2 cut(s) 63, 533
Bst6I CTCTTC 1 cut(s) 378
BstAUI TGTACA 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 488
BstDEI CTNAG 2 cut(s) 45, 861
BstDSI CCRYGG 2 cut(s) 264, 276
BstF5I GGATG 1 cut(s) 721
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 4 cut(s) 306, 538, 574, 757
BstMBI GATC 4 cut(s) 303, 535, 571, 754
BstMCI CGRYCG 1 cut(s) 778
BstNI CCWGG 2 cut(s) 107, 689
BstSCI CCNGG 3 cut(s) 98, 105, 687
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 53, 470
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
BstZI CGGCCG 1 cut(s) 775
BsuI GTATCC 1 cut(s) 838
BsuRI GGCC 3 cut(s) 463, 500, 777
BtgI CCRYGG 2 cut(s) 264, 276
BtsCI GGATG 1 cut(s) 721
BtsI GCAGTG 1 cut(s) 897
BtsIMutI CAGTG 3 cut(s) 538, 676, 897
Cac8I GCNNGC 1 cut(s) 488
CciI TCATGA 2 cut(s) 595, 904
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 461, 498
CsiI ACCWGGT 1 cut(s) 687
Csp6I GTAC 7 cut(s) 85, 235, 581, 628, 664, 833, 889
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 4 cut(s) 277, 596, 605, 905
CviQI GTAC 7 cut(s) 85, 235, 581, 628, 664, 833, 889
DdeI CTNAG 2 cut(s) 45, 861
DpnI GATC 4 cut(s) 305, 537, 573, 756
DpnII GATC 4 cut(s) 303, 535, 571, 754
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 775
EagI CGGCCG 1 cut(s) 775
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
EclXI CGGCCG 1 cut(s) 775
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 424
Eco52I CGGCCG 1 cut(s) 775
Eco57I CTGAAG 2 cut(s) 652, 851
EcoO109I RGGNCCY 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 105, 687
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 4 cut(s) 280, 599, 608, 908
FaqI GGGAC 1 cut(s) 154
FatI CATG 4 cut(s) 276, 595, 604, 904
FauI CCCGC 1 cut(s) 142
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 4 cut(s) 42, 484, 501, 775
FokI GGATG 1 cut(s) 728
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 4 cut(s) 42, 484, 501, 775
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 339
GluI GCNGC 4 cut(s) 42, 484, 501, 775
GsaI CCCAGC 1 cut(s) 141
GsuI CTGGAG 2 cut(s) 128, 674
HaeIII GGCC 3 cut(s) 463, 500, 777
HapII CCGG 4 cut(s) 100, 778, 830, 842
HhaI GCGC 1 cut(s) 340
Hin1II CATG 4 cut(s) 280, 599, 608, 908
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HincII GTYRAC 2 cut(s) 676, 883
HindII GTYRAC 2 cut(s) 676, 883
HinfI GANTC 4 cut(s) 112, 161, 199, 910
HpaII CCGG 4 cut(s) 100, 778, 830, 842
HphI GGTGA 2 cut(s) 156, 703
Hpy166II GTNNAC 4 cut(s) 356, 451, 676, 883
Hpy188I TCNGA 3 cut(s) 396, 862, 870
Hpy188III TCNNGA 7 cut(s) 196, 203, 478, 596, 611, 851, 905
Hpy8I GTNNAC 4 cut(s) 356, 451, 676, 883
HpyAV CCTTC 8 cut(s) 115, 200, 215, 351, 452, 489, 715, 764
HpyCH4III ACNGT 2 cut(s) 63, 533
HpyCH4V TGCA 1 cut(s) 486
HpyF3I CTNAG 2 cut(s) 45, 861
Hsp92II CATG 4 cut(s) 280, 599, 608, 908
HspAI GCGC 1 cut(s) 338
Kzo9I GATC 4 cut(s) 303, 535, 571, 754
LmnI GCTCC 3 cut(s) 102, 209, 266
Lsp1109I GCAGC 2 cut(s) 53, 470
MabI ACCWGGT 1 cut(s) 687
MaeI CTAG 1 cut(s) 26
MalI GATC 4 cut(s) 305, 537, 573, 756
MbiI CCGCTC 1 cut(s) 503
MboI GATC 4 cut(s) 303, 535, 571, 754
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 2 cut(s) 214, 424
MluCI AATT 1 cut(s) 390
MlyI GAGTC 2 cut(s) 121, 155
MnlI CCTC 9 cut(s) 85, 141, 262, 364, 607, 613, 616, 649, 804
MseI TTAA 2 cut(s) 282, 365
MslI CAYNNNNRTG 1 cut(s) 516
MspA1I CMGCKG 2 cut(s) 137, 578
MspI CCGG 4 cut(s) 100, 778, 830, 842
MspR9I CCNGG 3 cut(s) 100, 107, 689
Mva1269I GAATGC 1 cut(s) 877
MvaI CCWGG 2 cut(s) 107, 689
MvnI CGCG 1 cut(s) 55
NciI CCSGG 1 cut(s) 100
NcoI CCATGG 1 cut(s) 276
NdeII GATC 4 cut(s) 303, 535, 571, 754
NlaIII CATG 4 cut(s) 280, 599, 608, 908
NlaIV GGNNCC 4 cut(s) 96, 104, 262, 573
PagI TCATGA 2 cut(s) 595, 904
PctI GAATGC 1 cut(s) 877
PfeI GAWTC 2 cut(s) 199, 910
PkrI GCNGC 4 cut(s) 43, 485, 502, 776
PleI GAGTC 2 cut(s) 120, 155
PpsI GAGTC 2 cut(s) 120, 155
Psp6I CCWGG 2 cut(s) 105, 687
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 2 cut(s) 105, 687
PspN4I GGNNCC 4 cut(s) 96, 104, 262, 573
PspPI GGNCC 2 cut(s) 461, 498
PsuI RGATCY 1 cut(s) 571
RsaI GTAC 7 cut(s) 86, 236, 582, 629, 665, 834, 890
RsaNI GTAC 7 cut(s) 85, 235, 581, 628, 664, 833, 889
RseI CAYNNNNRTG 1 cut(s) 516
SaqAI TTAA 2 cut(s) 282, 365
SatI GCNGC 4 cut(s) 42, 484, 501, 775
Sau3AI GATC 4 cut(s) 303, 535, 571, 754
Sau96I GGNCC 2 cut(s) 461, 498
ScaI AGTACT 2 cut(s) 86, 629
SchI GAGTC 2 cut(s) 121, 155
ScrFI CCNGG 3 cut(s) 100, 107, 689
SduI GDGCHC 2 cut(s) 214, 424
SetI ASST 9 cut(s) 46, 152, 234, 485, 654, 693, 726, 867, 890
SexAI ACCWGGT 1 cut(s) 687
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 1 cut(s) 478
SmoI CTYRAG 1 cut(s) 478
Sse9I AATT 1 cut(s) 390
SsiI CCGC 5 cut(s) 53, 135, 501, 578, 774
SspI AATATT 1 cut(s) 751
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 3 cut(s) 98, 105, 687
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 2 cut(s) 63, 533
TaqI TCGA 2 cut(s) 197, 216
TasI AATT 1 cut(s) 390
TatI WGTACW 4 cut(s) 84, 234, 627, 663
TauI GCSGC 2 cut(s) 503, 777
TfiI GAWTC 2 cut(s) 199, 910
Tru1I TTAA 2 cut(s) 282, 365
Tru9I TTAA 2 cut(s) 282, 365
TscAI CASTG 3 cut(s) 538, 676, 904
TseI GCWGC 2 cut(s) 41, 483
TspDTI ATGAA 4 cut(s) 17, 593, 612, 818
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 3 cut(s) 538, 676, 904
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 1 cut(s) 26
ZrmI AGTACT 2 cut(s) 86, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.