Rroxscaffold_4G00317080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000661
Physical Location & Seq
Reverse (-)
42207062 .. 42207436
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00317080.1

Sequence Viewer

Length: 375 bp
ATGGTTAAAAGAGAAGTGGTTGCTTTGATCCCTGTGGTGGTGGCCGTTGTTTCGGCTTCTCTGCCTTCCAATGAGCTTGGACTTGTTTCAAGTGAGGGAGAAATGGAAGAGATAAATTTGATGAGGATTTACAAGTTCTATCCGGTACAAACACCGCATAGGCCTGACATATCTCAGTTTAAGAATGCATTTGTCAACAGGTATTATGACACTGCTCATGAGATGATGAGATTCCGTGATGATTACGTTCCCAAGTCAACCAGATGCCACATTAACCCAAGTGCAACATTCTCTGACAAAATATTCTGCCCTGCCTGGTCAAGTTTCAGTGAAGCCAATTATGAATTATGCTTAGCCGACCCTGGCCTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.16

Weight (kDa)

5.35

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 155
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 115
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 1 cut(s) 90
AjnI CCWGG 2 cut(s) 314, 361
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
AlwI GGATC 1 cut(s) 22
AoxI GGCC 3 cut(s) 42, 161, 364
ApoI RAATTY 1 cut(s) 115
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 2 cut(s) 316, 363
BlpI GCTNAGC 1 cut(s) 352
Bme1390I CCNGG 2 cut(s) 316, 363
BmrFI CCNGG 2 cut(s) 316, 363
BmsI GCATC 1 cut(s) 254
Bpu1102I GCTNAGC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseBI CCWGG 2 cut(s) 316, 363
BseDI CCNNGG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 188
BshFI GGCC 3 cut(s) 44, 163, 366
BsiSI CCGG 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 37
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 3 cut(s) 44, 163, 366
Bsp143I GATC 1 cut(s) 27
Bsp1720I GCTNAGC 1 cut(s) 352
BspACI CCGC 1 cut(s) 155
BspANI GGCC 3 cut(s) 44, 163, 366
BspCNI CTCAG 1 cut(s) 187
BspHI TCATGA 1 cut(s) 217
BspPI GGATC 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 1 cut(s) 27
Bst2UI CCWGG 2 cut(s) 316, 363
Bst6I CTCTTC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 174, 352
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BstNI CCWGG 2 cut(s) 316, 363
BstSCI CCNGG 2 cut(s) 314, 361
BsuRI GGCC 3 cut(s) 44, 163, 366
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 2 cut(s) 210, 334
CciI TCATGA 1 cut(s) 217
Csp6I GTAC 1 cut(s) 146
CviAII CATG 1 cut(s) 218
CviJI RGCY 7 cut(s) 44, 56, 76, 163, 335, 356, 366
CviKI_1 RGCY 7 cut(s) 44, 56, 76, 163, 335, 356, 366
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 2 cut(s) 174, 352
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco147I AGGCCT 1 cut(s) 163
EcoRII CCWGG 2 cut(s) 314, 361
EcoT22I ATGCAT 1 cut(s) 190
FaeI CATG 1 cut(s) 221
FaiI YATR 6 cut(s) 159, 170, 207, 219, 342, 349
FatI CATG 1 cut(s) 217
HaeIII GGCC 3 cut(s) 44, 163, 366
HapII CCGG 1 cut(s) 143
Hin1II CATG 1 cut(s) 221
HincII GTYRAC 2 cut(s) 196, 258
HindII GTYRAC 2 cut(s) 196, 258
HinfI GANTC 1 cut(s) 231
HpaII CCGG 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 196, 258
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 2 cut(s) 196, 258
HpyAV CCTTC 1 cut(s) 75
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 188, 284
HpyF3I CTNAG 2 cut(s) 174, 352
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 1 cut(s) 221
Kzo9I GATC 1 cut(s) 27
LpnPI CCDG 9 cut(s) 45, 156, 177, 184, 274, 301, 324, 328, 348
LweI GCATC 1 cut(s) 254
MaeII ACGT 1 cut(s) 246
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 1 cut(s) 119
MluCI AATT 3 cut(s) 115, 337, 344
MnlI CCTC 2 cut(s) 88, 117
Mph1103I ATGCAT 1 cut(s) 190
MseI TTAA 3 cut(s) 6, 180, 273
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 316, 363
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 2 cut(s) 316, 363
NdeII GATC 1 cut(s) 27
NlaIII CATG 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 190
PagI TCATGA 1 cut(s) 217
PceI AGGCCT 1 cut(s) 163
PctI GAATGC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 231
Psp6I CCWGG 2 cut(s) 314, 361
PspGI CCWGG 2 cut(s) 314, 361
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 3 cut(s) 6, 180, 273
Sau3AI GATC 1 cut(s) 27
ScrFI CCNGG 2 cut(s) 316, 363
SetI ASST 3 cut(s) 78, 203, 249
SfaNI GCATC 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 3 cut(s) 115, 337, 344
SseBI AGGCCT 1 cut(s) 163
SsiI CCGC 1 cut(s) 155
SspI AATATT 1 cut(s) 303
StuI AGGCCT 1 cut(s) 163
StyD4I CCNGG 2 cut(s) 314, 361
TaiI ACGT 1 cut(s) 249
TasI AATT 3 cut(s) 115, 337, 344
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 3 cut(s) 6, 180, 273
Tru9I TTAA 3 cut(s) 6, 180, 273
TscAI CASTG 2 cut(s) 217, 334
TspDTI ATGAA 1 cut(s) 357
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 2 cut(s) 217, 334
XapI RAATTY 1 cut(s) 115
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.