Rw0G017600

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00786
Physical Location & Seq
Reverse (-)
41119 .. 56957
15839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G017600.1

Sequence Viewer

Length: 897 bp
ATGAGCAAAGGAGCCAAGAGAAAGGCTCGGCTGGCGGCGACGGAGGAGGCCAAAGTCACCACCACACTCGTCAAGCGCGTCAAGGCCTCTCAGCAGCATCAGGAGGCGGAGCCTCAGTACTGGGATCAGTTGGACTCGGTCTACAAATACAACTGGGATTTCTCGAATCTCGAGAAGGAATTTAAAGATGGTGGAAAGTTGTACGGAATTGGAACGACCAACAAAGTCTACATCCTCGCCGCTACGGAGGGTCCGTCGCCGTCGCTACCTGTGCTGATTCCTACGCTGGCGGCGGTCGTGGCGCCTCGGCCGCCTTCGATGGAAATTGGGATTCGATCGGTGCAGAGAGAAGAGGAGATAGTTCCTATGAAGCATATGAAGATGGACTGGATCCCCTACATTCCTCTAGAGCTCAGAGAAGGCTGGAATTCGGAAAGAATTTTCGTGCTGGGATGTACTCAGAGGAAGGCAAGCTTGAAGCAGATGAAGGAGGACCACTGGATGAAGTTCCAGTACTGTGTGCCTTATATATTGAATCCGAAATACGAAGAAGAGAAGGAGCAGAATACTGTGGTGGAATTTTTCTTCCCACGGGAGCCTCAACTGCCCCTGGGGTGTGAACTCAATTGGGACATGGATGAAGTTGAGGATTTCACTGATAAACTTATAGAGGATGAGGAGTTGAGTGAGGATAAGAAGGAGGCATTCATGGAACTGTTTGCACACCAGCTGGTTTTGGAGCCAAACAAGAAGAATAAGAGGGAAGCGAGGAAGAAGAGAATGGAGGACCCAAAGTATCAGGAAGCTAAAACCTATTATGAGAATATGAGGCTTTACAAGATTTACCCATCTCATTATGTCAACTTCTACTACAGGTTTGCCCATGAGATTATTTGA

Protein Analysis

298

Amino Acids

35.33

Weight (kDa)

5.99

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AccI GTMKAC 2 cut(s) 141, 228
AccII CGCG 1 cut(s) 78
AciI CCGC 6 cut(s) 35, 107, 240, 290, 293, 311
AclWI GGATC 3 cut(s) 132, 385, 398
AcoI YGGCCR 1 cut(s) 308
AcsI RAATTY 4 cut(s) 179, 427, 438, 578
AcyI GRCGYC 1 cut(s) 302
AfaI GTAC 4 cut(s) 119, 203, 457, 515
AgsI TTSAA 2 cut(s) 478, 535
AjnI CCWGG 1 cut(s) 609
AluBI AGCT 4 cut(s) 412, 474, 730, 806
AluI AGCT 4 cut(s) 412, 474, 730, 806
Alw21I GWGCWC 1 cut(s) 414
AlwI GGATC 3 cut(s) 132, 385, 398
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 3 cut(s) 48, 84, 308
ApeKI GCWGC 1 cut(s) 94
ApoI RAATTY 4 cut(s) 179, 427, 438, 578
AspLEI GCGC 2 cut(s) 78, 304
AspS9I GGNCC 3 cut(s) 251, 493, 787
AsuHPI GGTGA 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 3 cut(s) 251, 493, 787
BamHI GGATCC 1 cut(s) 390
BanI GGYRCC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 414
BarI GAAGNNNNNNTAC 2 cut(s) 497, 529
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 1 cut(s) 106
BccI CCATC 4 cut(s) 182, 313, 376, 856
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 611
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 871
BfoI RGCGCY 1 cut(s) 305
BisI GCNGC 5 cut(s) 36, 95, 240, 291, 311
BlsI GCNGC 5 cut(s) 37, 96, 241, 292, 312
BmcAI AGTACT 2 cut(s) 119, 515
Bme1390I CCNGG 1 cut(s) 611
Bme18I GGWCC 3 cut(s) 251, 493, 787
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 3 cut(s) 251, 493, 787
BmiI GGNNCC 8 cut(s) 13, 111, 252, 303, 392, 597, 741, 789
BmrFI CCNGG 1 cut(s) 611
BmrI ACTGGG 2 cut(s) 130, 163
BmsI GCATC 1 cut(s) 106
BmuI ACTGGG 2 cut(s) 130, 163
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BsaHI GRCGYC 1 cut(s) 302
BsaJI CCNNGG 4 cut(s) 305, 590, 609, 610
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 239, 269
Bse1I ACTGG 5 cut(s) 125, 158, 392, 503, 511
BseBI CCWGG 1 cut(s) 611
BseDI CCNNGG 4 cut(s) 305, 590, 609, 610
BseGI GGATG 5 cut(s) 231, 458, 507, 643, 679
BseMII CTCAG 4 cut(s) 104, 128, 427, 473
BseNI ACTGG 5 cut(s) 125, 158, 392, 503, 511
BseRI GAGGAG 3 cut(s) 59, 368, 692
BseX3I CGGCCG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 448
BsgI GTGCAG 1 cut(s) 362
Bsh1236I CGCG 1 cut(s) 78
Bsh1285I CGRYCG 3 cut(s) 297, 311, 338
BshFI GGCC 3 cut(s) 50, 86, 310
BshNI GGYRCC 1 cut(s) 301
BsiEI CGRYCG 3 cut(s) 297, 311, 338
BsiHKAI GWGCWC 1 cut(s) 414
BsiHKCI CYCGRG 1 cut(s) 170
BslFI GGGAC 1 cut(s) 644
BsmFI GGGAC 1 cut(s) 644
BsmI GAATGC 1 cut(s) 704
BsnI GGCC 3 cut(s) 50, 86, 310
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 3 cut(s) 124, 335, 390
BspACI CCGC 6 cut(s) 35, 107, 240, 290, 293, 311
BspANI GGCC 3 cut(s) 50, 86, 310
BspCNI CTCAG 4 cut(s) 103, 127, 426, 472
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 8 cut(s) 13, 111, 252, 303, 392, 597, 741, 789
BspPI GGATC 3 cut(s) 132, 385, 398
BspT107I GGYRCC 1 cut(s) 301
BsrI ACTGG 5 cut(s) 125, 158, 392, 503, 511
BssECI CCNNGG 4 cut(s) 305, 590, 609, 610
BssMI GATC 3 cut(s) 124, 335, 390
BssNI GRCGYC 1 cut(s) 302
Bst2UI CCWGG 1 cut(s) 611
Bst4CI ACNGT 3 cut(s) 518, 571, 717
Bst6I CTCTTC 3 cut(s) 345, 546, 770
BstACI GRCGYC 1 cut(s) 302
BstC8I GCNNGC 3 cut(s) 33, 288, 472
BstDEI CTNAG 4 cut(s) 90, 114, 413, 459
BstDSI CCRYGG 1 cut(s) 590
BstF5I GGATG 5 cut(s) 231, 458, 507, 643, 679
BstFNI CGCG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 2 cut(s) 78, 304
BstKTI GATC 3 cut(s) 127, 338, 393
BstMBI GATC 3 cut(s) 124, 335, 390
BstMCI CGRYCG 3 cut(s) 297, 311, 338
BstMWI GCNNNNNNNGC 5 cut(s) 32, 271, 299, 310, 604
BstNI CCWGG 1 cut(s) 611
BstSCI CCNGG 1 cut(s) 609
BstSFI CTRYAG 1 cut(s) 871
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
BstZI CGGCCG 1 cut(s) 308
BsuRI GGCC 3 cut(s) 50, 86, 310
BtgI CCRYGG 1 cut(s) 590
BtsCI GGATG 5 cut(s) 231, 458, 507, 643, 679
BtsIMutI CAGTG 2 cut(s) 496, 654
Cac8I GCNNGC 3 cut(s) 33, 288, 472
CfoI GCGC 2 cut(s) 78, 304
Cfr13I GGNCC 3 cut(s) 251, 493, 787
CseI GACGC 1 cut(s) 67
Csp6I GTAC 4 cut(s) 118, 202, 456, 514
CviAII CATG 3 cut(s) 634, 709, 884
CviQI GTAC 4 cut(s) 118, 202, 456, 514
DdeI CTNAG 4 cut(s) 90, 114, 413, 459
DinI GGCGCC 1 cut(s) 303
DpnI GATC 3 cut(s) 126, 337, 392
DpnII GATC 3 cut(s) 124, 335, 390
DraI TTTAAA 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 308
EagI CGGCCG 1 cut(s) 308
Eam1104I CTCTTC 3 cut(s) 345, 546, 770
EarI CTCTTC 3 cut(s) 345, 546, 770
EciI GGCGGA 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 412
EclXI CGGCCG 1 cut(s) 308
Eco147I AGGCCT 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 414
Eco47I GGWCC 3 cut(s) 251, 493, 787
Eco52I CGGCCG 1 cut(s) 308
Eco53kI GAGCTC 1 cut(s) 412
Eco88I CYCGRG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 412
EcoO109I RGGNCCY 1 cut(s) 787
EcoRI GAATTC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 609
EcoT38I GRGCYC 1 cut(s) 414
EgeI GGCGCC 1 cut(s) 303
EheI GGCGCC 1 cut(s) 303
FaeI CATG 3 cut(s) 637, 712, 887
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FaqI GGGAC 1 cut(s) 644
FatI CATG 3 cut(s) 633, 708, 883
FauNDI CATATG 1 cut(s) 375
FblI GTMKAC 2 cut(s) 141, 228
Fnu4HI GCNGC 5 cut(s) 36, 95, 240, 291, 311
FokI GGATG 5 cut(s) 218, 465, 514, 650, 686
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 5 cut(s) 36, 95, 240, 291, 311
FspBI CTAG 1 cut(s) 407
GlaI GCGC 2 cut(s) 77, 303
GluI GCNGC 5 cut(s) 36, 95, 240, 291, 311
GsaI CCCAGC 1 cut(s) 452
HaeII RGCGCY 1 cut(s) 305
HaeIII GGCC 3 cut(s) 50, 86, 310
HgaI GACGC 1 cut(s) 67
HhaI GCGC 2 cut(s) 78, 304
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 3 cut(s) 637, 712, 887
Hin6I GCGC 2 cut(s) 76, 302
HinP1I GCGC 2 cut(s) 76, 302
HincII GTYRAC 1 cut(s) 862
HindII GTYRAC 1 cut(s) 862
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 5 cut(s) 134, 166, 277, 331, 535
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 4 cut(s) 142, 229, 620, 862
Hpy188I TCNGA 4 cut(s) 416, 433, 462, 540
Hpy188III TCNNGA 6 cut(s) 101, 163, 170, 172, 407, 800
Hpy8I GTNNAC 4 cut(s) 142, 229, 620, 862
Hpy99I CGWCG 3 cut(s) 43, 259, 265
HpyAV CCTTC 7 cut(s) 169, 324, 413, 460, 481, 550, 691
HpyCH4III ACNGT 3 cut(s) 518, 571, 717
HpyCH4V TGCA 2 cut(s) 343, 722
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 271, 299, 310, 604
HpyF3I CTNAG 4 cut(s) 90, 114, 413, 459
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 3 cut(s) 637, 712, 887
HspAI GCGC 2 cut(s) 76, 302
KasI GGCGCC 1 cut(s) 301
Kzo9I GATC 3 cut(s) 124, 335, 390
LmnI GCTCC 5 cut(s) 11, 109, 559, 595, 739
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 55
MalI GATC 3 cut(s) 126, 337, 392
MboI GATC 3 cut(s) 124, 335, 390
MboII GAAGA 8 cut(s) 362, 391, 560, 563, 577, 763, 784, 787
MfeI CAATTG 1 cut(s) 625
MflI RGATCY 1 cut(s) 390
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 7 cut(s) 179, 207, 324, 427, 438, 578, 625
Mly113I GGCGCC 1 cut(s) 302
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 111
MseI TTAA 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 730
MspR9I CCNGG 1 cut(s) 611
MunI CAATTG 1 cut(s) 625
Mva1269I GAATGC 1 cut(s) 704
MvaI CCWGG 1 cut(s) 611
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 5 cut(s) 32, 271, 299, 310, 604
NarI GGCGCC 1 cut(s) 302
NdeI CATATG 1 cut(s) 375
NdeII GATC 3 cut(s) 124, 335, 390
NlaIII CATG 3 cut(s) 637, 712, 887
NlaIV GGNNCC 8 cut(s) 13, 111, 252, 303, 392, 597, 741, 789
NmeAIII GCCGAG 2 cut(s) 7, 286
NmuCI GTSAC 1 cut(s) 55
PaeR7I CTCGAG 1 cut(s) 170
PasI CCCWGGG 1 cut(s) 610
PceI AGGCCT 1 cut(s) 86
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 251
PctI GAATGC 1 cut(s) 704
PfeI GAWTC 4 cut(s) 166, 277, 331, 535
PflFI GACNNNGTC 1 cut(s) 137
PkrI GCNGC 5 cut(s) 37, 96, 241, 292, 312
Ple19I CGATCG 1 cut(s) 338
PleI GAGTC 1 cut(s) 128
PluTI GGCGCC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 128
PpuMI RGGWCCY 1 cut(s) 787
Psp124BI GAGCTC 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 787
Psp6I CCWGG 1 cut(s) 609
PspFI CCCAGC 1 cut(s) 448
PspGI CCWGG 1 cut(s) 609
PspN4I GGNNCC 8 cut(s) 13, 111, 252, 303, 392, 597, 741, 789
PspPI GGNCC 3 cut(s) 251, 493, 787
PspPPI RGGWCCY 1 cut(s) 787
PsuI RGATCY 1 cut(s) 390
PsyI GACNNNGTC 1 cut(s) 137
PvuI CGATCG 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 730
RsaI GTAC 4 cut(s) 119, 203, 457, 515
RsaNI GTAC 4 cut(s) 118, 202, 456, 514
SacI GAGCTC 1 cut(s) 414
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 5 cut(s) 36, 95, 240, 291, 311
Sau3AI GATC 3 cut(s) 124, 335, 390
Sau96I GGNCC 3 cut(s) 251, 493, 787
ScaI AGTACT 2 cut(s) 119, 515
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 611
SduI GDGCHC 1 cut(s) 414
SetI ASST 7 cut(s) 271, 414, 476, 732, 808, 815, 878
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 871
SfoI GGCGCC 1 cut(s) 303
Sfr274I CTCGAG 1 cut(s) 170
SinI GGWCC 3 cut(s) 251, 493, 787
SlaI CTCGAG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 7 cut(s) 179, 207, 324, 427, 438, 578, 625
SseBI AGGCCT 1 cut(s) 86
SsiI CCGC 6 cut(s) 35, 107, 240, 290, 293, 311
SspDI GGCGCC 1 cut(s) 301
SspMI CTAG 1 cut(s) 407
SstI GAGCTC 1 cut(s) 414
StuI AGGCCT 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 609
TaaI ACNGT 3 cut(s) 518, 571, 717
TaqI TCGA 4 cut(s) 164, 171, 317, 334
TaqII GACCGA 1 cut(s) 127
TasI AATT 7 cut(s) 179, 207, 324, 427, 438, 578, 625
TatI WGTACW 3 cut(s) 117, 455, 513
TauI GCSGC 4 cut(s) 38, 242, 293, 313
TfiI GAWTC 4 cut(s) 166, 277, 331, 535
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 2 cut(s) 503, 661
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 6 cut(s) 383, 392, 500, 518, 654, 697
TspGWI ACGGA 4 cut(s) 56, 219, 243, 260
TspRI CASTG 2 cut(s) 503, 661
Tth111I GACNNNGTC 1 cut(s) 137
VpaK11BI GGWCC 3 cut(s) 251, 493, 787
XapI RAATTY 4 cut(s) 179, 427, 438, 578
XbaI TCTAGA 1 cut(s) 406
XhoI CTCGAG 1 cut(s) 170
XmiI GTMKAC 2 cut(s) 141, 228
XspI CTAG 1 cut(s) 407
ZrmI AGTACT 2 cut(s) 119, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.