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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 301 |
| AccI | GTMKAC | 2 cut(s) | 141, 228 |
| AccII | CGCG | 1 cut(s) | 78 |
| AciI | CCGC | 6 cut(s) | 35, 107, 240, 290, 293, 311 |
| AclWI | GGATC | 3 cut(s) | 132, 385, 398 |
| AcoI | YGGCCR | 1 cut(s) | 308 |
| AcsI | RAATTY | 4 cut(s) | 179, 427, 438, 578 |
| AcyI | GRCGYC | 1 cut(s) | 302 |
| AfaI | GTAC | 4 cut(s) | 119, 203, 457, 515 |
| AgsI | TTSAA | 2 cut(s) | 478, 535 |
| AjnI | CCWGG | 1 cut(s) | 609 |
| AluBI | AGCT | 4 cut(s) | 412, 474, 730, 806 |
| AluI | AGCT | 4 cut(s) | 412, 474, 730, 806 |
| Alw21I | GWGCWC | 1 cut(s) | 414 |
| AlwI | GGATC | 3 cut(s) | 132, 385, 398 |
| Ama87I | CYCGRG | 1 cut(s) | 170 |
| AoxI | GGCC | 3 cut(s) | 48, 84, 308 |
| ApeKI | GCWGC | 1 cut(s) | 94 |
| ApoI | RAATTY | 4 cut(s) | 179, 427, 438, 578 |
| AspLEI | GCGC | 2 cut(s) | 78, 304 |
| AspS9I | GGNCC | 3 cut(s) | 251, 493, 787 |
| AsuHPI | GGTGA | 1 cut(s) | 49 |
| AvaI | CYCGRG | 1 cut(s) | 170 |
| AvaII | GGWCC | 3 cut(s) | 251, 493, 787 |
| BamHI | GGATCC | 1 cut(s) | 390 |
| BanI | GGYRCC | 1 cut(s) | 301 |
| BanII | GRGCYC | 1 cut(s) | 414 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 497, 529 |
| Bbv12I | GWGCWC | 1 cut(s) | 414 |
| BbvI | GCAGC | 1 cut(s) | 106 |
| BccI | CCATC | 4 cut(s) | 182, 313, 376, 856 |
| BceAI | ACGGC | 1 cut(s) | 244 |
| BciT130I | CCWGG | 1 cut(s) | 611 |
| BfaI | CTAG | 1 cut(s) | 407 |
| BfmI | CTRYAG | 1 cut(s) | 871 |
| BfoI | RGCGCY | 1 cut(s) | 305 |
| BisI | GCNGC | 5 cut(s) | 36, 95, 240, 291, 311 |
| BlsI | GCNGC | 5 cut(s) | 37, 96, 241, 292, 312 |
| BmcAI | AGTACT | 2 cut(s) | 119, 515 |
| Bme1390I | CCNGG | 1 cut(s) | 611 |
| Bme18I | GGWCC | 3 cut(s) | 251, 493, 787 |
| BmeT110I | CYCGRG | 1 cut(s) | 170 |
| BmgT120I | GGNCC | 3 cut(s) | 251, 493, 787 |
| BmiI | GGNNCC | 8 cut(s) | 13, 111, 252, 303, 392, 597, 741, 789 |
| BmrFI | CCNGG | 1 cut(s) | 611 |
| BmrI | ACTGGG | 2 cut(s) | 130, 163 |
| BmsI | GCATC | 1 cut(s) | 106 |
| BmuI | ACTGGG | 2 cut(s) | 130, 163 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 10, 42 |
| BsaHI | GRCGYC | 1 cut(s) | 302 |
| BsaJI | CCNNGG | 4 cut(s) | 305, 590, 609, 610 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 101, 131, 239, 269 |
| Bse1I | ACTGG | 5 cut(s) | 125, 158, 392, 503, 511 |
| BseBI | CCWGG | 1 cut(s) | 611 |
| BseDI | CCNNGG | 4 cut(s) | 305, 590, 609, 610 |
| BseGI | GGATG | 5 cut(s) | 231, 458, 507, 643, 679 |
| BseMII | CTCAG | 4 cut(s) | 104, 128, 427, 473 |
| BseNI | ACTGG | 5 cut(s) | 125, 158, 392, 503, 511 |
| BseRI | GAGGAG | 3 cut(s) | 59, 368, 692 |
| BseX3I | CGGCCG | 1 cut(s) | 308 |
| BseXI | GCAGC | 1 cut(s) | 106 |
| BseYI | CCCAGC | 1 cut(s) | 448 |
| BsgI | GTGCAG | 1 cut(s) | 362 |
| Bsh1236I | CGCG | 1 cut(s) | 78 |
| Bsh1285I | CGRYCG | 3 cut(s) | 297, 311, 338 |
| BshFI | GGCC | 3 cut(s) | 50, 86, 310 |
| BshNI | GGYRCC | 1 cut(s) | 301 |
| BsiEI | CGRYCG | 3 cut(s) | 297, 311, 338 |
| BsiHKAI | GWGCWC | 1 cut(s) | 414 |
| BsiHKCI | CYCGRG | 1 cut(s) | 170 |
| BslFI | GGGAC | 1 cut(s) | 644 |
| BsmFI | GGGAC | 1 cut(s) | 644 |
| BsmI | GAATGC | 1 cut(s) | 704 |
| BsnI | GGCC | 3 cut(s) | 50, 86, 310 |
| BsoBI | CYCGRG | 1 cut(s) | 170 |
| Bsp1286I | GDGCHC | 1 cut(s) | 414 |
| Bsp143I | GATC | 3 cut(s) | 124, 335, 390 |
| BspACI | CCGC | 6 cut(s) | 35, 107, 240, 290, 293, 311 |
| BspANI | GGCC | 3 cut(s) | 50, 86, 310 |
| BspCNI | CTCAG | 4 cut(s) | 103, 127, 426, 472 |
| BspFNI | CGCG | 1 cut(s) | 78 |
| BspLI | GGNNCC | 8 cut(s) | 13, 111, 252, 303, 392, 597, 741, 789 |
| BspPI | GGATC | 3 cut(s) | 132, 385, 398 |
| BspT107I | GGYRCC | 1 cut(s) | 301 |
| BsrI | ACTGG | 5 cut(s) | 125, 158, 392, 503, 511 |
| BssECI | CCNNGG | 4 cut(s) | 305, 590, 609, 610 |
| BssMI | GATC | 3 cut(s) | 124, 335, 390 |
| BssNI | GRCGYC | 1 cut(s) | 302 |
| Bst2UI | CCWGG | 1 cut(s) | 611 |
| Bst4CI | ACNGT | 3 cut(s) | 518, 571, 717 |
| Bst6I | CTCTTC | 3 cut(s) | 345, 546, 770 |
| BstACI | GRCGYC | 1 cut(s) | 302 |
| BstC8I | GCNNGC | 3 cut(s) | 33, 288, 472 |
| BstDEI | CTNAG | 4 cut(s) | 90, 114, 413, 459 |
| BstDSI | CCRYGG | 1 cut(s) | 590 |
| BstF5I | GGATG | 5 cut(s) | 231, 458, 507, 643, 679 |
| BstFNI | CGCG | 1 cut(s) | 78 |
| BstH2I | RGCGCY | 1 cut(s) | 305 |
| BstHHI | GCGC | 2 cut(s) | 78, 304 |
| BstKTI | GATC | 3 cut(s) | 127, 338, 393 |
| BstMBI | GATC | 3 cut(s) | 124, 335, 390 |
| BstMCI | CGRYCG | 3 cut(s) | 297, 311, 338 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 32, 271, 299, 310, 604 |
| BstNI | CCWGG | 1 cut(s) | 611 |
| BstSCI | CCNGG | 1 cut(s) | 609 |
| BstSFI | CTRYAG | 1 cut(s) | 871 |
| BstUI | CGCG | 1 cut(s) | 78 |
| BstV1I | GCAGC | 1 cut(s) | 106 |
| BstX2I | RGATCY | 1 cut(s) | 390 |
| BstYI | RGATCY | 1 cut(s) | 390 |
| BstZI | CGGCCG | 1 cut(s) | 308 |
| BsuRI | GGCC | 3 cut(s) | 50, 86, 310 |
| BtgI | CCRYGG | 1 cut(s) | 590 |
| BtsCI | GGATG | 5 cut(s) | 231, 458, 507, 643, 679 |
| BtsIMutI | CAGTG | 2 cut(s) | 496, 654 |
| Cac8I | GCNNGC | 3 cut(s) | 33, 288, 472 |
| CfoI | GCGC | 2 cut(s) | 78, 304 |
| Cfr13I | GGNCC | 3 cut(s) | 251, 493, 787 |
| CseI | GACGC | 1 cut(s) | 67 |
| Csp6I | GTAC | 4 cut(s) | 118, 202, 456, 514 |
| CviAII | CATG | 3 cut(s) | 634, 709, 884 |
| CviQI | GTAC | 4 cut(s) | 118, 202, 456, 514 |
| DdeI | CTNAG | 4 cut(s) | 90, 114, 413, 459 |
| DinI | GGCGCC | 1 cut(s) | 303 |
| DpnI | GATC | 3 cut(s) | 126, 337, 392 |
| DpnII | GATC | 3 cut(s) | 124, 335, 390 |
| DraI | TTTAAA | 1 cut(s) | 184 |
| EaeI | YGGCCR | 1 cut(s) | 308 |
| EagI | CGGCCG | 1 cut(s) | 308 |
| Eam1104I | CTCTTC | 3 cut(s) | 345, 546, 770 |
| EarI | CTCTTC | 3 cut(s) | 345, 546, 770 |
| EciI | GGCGGA | 1 cut(s) | 122 |
| Ecl136II | GAGCTC | 1 cut(s) | 412 |
| EclXI | CGGCCG | 1 cut(s) | 308 |
| Eco147I | AGGCCT | 1 cut(s) | 86 |
| Eco24I | GRGCYC | 1 cut(s) | 414 |
| Eco47I | GGWCC | 3 cut(s) | 251, 493, 787 |
| Eco52I | CGGCCG | 1 cut(s) | 308 |
| Eco53kI | GAGCTC | 1 cut(s) | 412 |
| Eco88I | CYCGRG | 1 cut(s) | 170 |
| EcoICRI | GAGCTC | 1 cut(s) | 412 |
| EcoO109I | RGGNCCY | 1 cut(s) | 787 |
| EcoRI | GAATTC | 1 cut(s) | 427 |
| EcoRII | CCWGG | 1 cut(s) | 609 |
| EcoT38I | GRGCYC | 1 cut(s) | 414 |
| EgeI | GGCGCC | 1 cut(s) | 303 |
| EheI | GGCGCC | 1 cut(s) | 303 |
| FaeI | CATG | 3 cut(s) | 637, 712, 887 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 458, 490 |
| FaqI | GGGAC | 1 cut(s) | 644 |
| FatI | CATG | 3 cut(s) | 633, 708, 883 |
| FauNDI | CATATG | 1 cut(s) | 375 |
| FblI | GTMKAC | 2 cut(s) | 141, 228 |
| Fnu4HI | GCNGC | 5 cut(s) | 36, 95, 240, 291, 311 |
| FokI | GGATG | 5 cut(s) | 218, 465, 514, 650, 686 |
| FriOI | GRGCYC | 1 cut(s) | 414 |
| Fsp4HI | GCNGC | 5 cut(s) | 36, 95, 240, 291, 311 |
| FspBI | CTAG | 1 cut(s) | 407 |
| GlaI | GCGC | 2 cut(s) | 77, 303 |
| GluI | GCNGC | 5 cut(s) | 36, 95, 240, 291, 311 |
| GsaI | CCCAGC | 1 cut(s) | 452 |
| HaeII | RGCGCY | 1 cut(s) | 305 |
| HaeIII | GGCC | 3 cut(s) | 50, 86, 310 |
| HgaI | GACGC | 1 cut(s) | 67 |
| HhaI | GCGC | 2 cut(s) | 78, 304 |
| Hin1I | GRCGYC | 1 cut(s) | 302 |
| Hin1II | CATG | 3 cut(s) | 637, 712, 887 |
| Hin6I | GCGC | 2 cut(s) | 76, 302 |
| HinP1I | GCGC | 2 cut(s) | 76, 302 |
| HincII | GTYRAC | 1 cut(s) | 862 |
| HindII | GTYRAC | 1 cut(s) | 862 |
| HindIII | AAGCTT | 1 cut(s) | 472 |
| HinfI | GANTC | 5 cut(s) | 134, 166, 277, 331, 535 |
| HphI | GGTGA | 1 cut(s) | 49 |
| Hpy166II | GTNNAC | 4 cut(s) | 142, 229, 620, 862 |
| Hpy188I | TCNGA | 4 cut(s) | 416, 433, 462, 540 |
| Hpy188III | TCNNGA | 6 cut(s) | 101, 163, 170, 172, 407, 800 |
| Hpy8I | GTNNAC | 4 cut(s) | 142, 229, 620, 862 |
| Hpy99I | CGWCG | 3 cut(s) | 43, 259, 265 |
| HpyAV | CCTTC | 7 cut(s) | 169, 324, 413, 460, 481, 550, 691 |
| HpyCH4III | ACNGT | 3 cut(s) | 518, 571, 717 |
| HpyCH4V | TGCA | 2 cut(s) | 343, 722 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 32, 271, 299, 310, 604 |
| HpyF3I | CTNAG | 4 cut(s) | 90, 114, 413, 459 |
| Hsp92I | GRCGYC | 1 cut(s) | 302 |
| Hsp92II | CATG | 3 cut(s) | 637, 712, 887 |
| HspAI | GCGC | 2 cut(s) | 76, 302 |
| KasI | GGCGCC | 1 cut(s) | 301 |
| Kzo9I | GATC | 3 cut(s) | 124, 335, 390 |
| LmnI | GCTCC | 5 cut(s) | 11, 109, 559, 595, 739 |
| Lsp1109I | GCAGC | 1 cut(s) | 106 |
| LweI | GCATC | 1 cut(s) | 106 |
| MaeI | CTAG | 1 cut(s) | 407 |
| MaeIII | GTNAC | 1 cut(s) | 55 |
| MalI | GATC | 3 cut(s) | 126, 337, 392 |
| MboI | GATC | 3 cut(s) | 124, 335, 390 |
| MboII | GAAGA | 8 cut(s) | 362, 391, 560, 563, 577, 763, 784, 787 |
| MfeI | CAATTG | 1 cut(s) | 625 |
| MflI | RGATCY | 1 cut(s) | 390 |
| MhlI | GDGCHC | 1 cut(s) | 414 |
| MluCI | AATT | 7 cut(s) | 179, 207, 324, 427, 438, 578, 625 |
| Mly113I | GGCGCC | 1 cut(s) | 302 |
| MlyI | GAGTC | 1 cut(s) | 128 |
| MmeI | TCCRAC | 1 cut(s) | 111 |
| MseI | TTAA | 1 cut(s) | 183 |
| MspA1I | CMGCKG | 1 cut(s) | 730 |
| MspR9I | CCNGG | 1 cut(s) | 611 |
| MunI | CAATTG | 1 cut(s) | 625 |
| Mva1269I | GAATGC | 1 cut(s) | 704 |
| MvaI | CCWGG | 1 cut(s) | 611 |
| MvnI | CGCG | 1 cut(s) | 78 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 32, 271, 299, 310, 604 |
| NarI | GGCGCC | 1 cut(s) | 302 |
| NdeI | CATATG | 1 cut(s) | 375 |
| NdeII | GATC | 3 cut(s) | 124, 335, 390 |
| NlaIII | CATG | 3 cut(s) | 637, 712, 887 |
| NlaIV | GGNNCC | 8 cut(s) | 13, 111, 252, 303, 392, 597, 741, 789 |
| NmeAIII | GCCGAG | 2 cut(s) | 7, 286 |
| NmuCI | GTSAC | 1 cut(s) | 55 |
| PaeR7I | CTCGAG | 1 cut(s) | 170 |
| PasI | CCCWGGG | 1 cut(s) | 610 |
| PceI | AGGCCT | 1 cut(s) | 86 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 75, 251 |
| PctI | GAATGC | 1 cut(s) | 704 |
| PfeI | GAWTC | 4 cut(s) | 166, 277, 331, 535 |
| PflFI | GACNNNGTC | 1 cut(s) | 137 |
| PkrI | GCNGC | 5 cut(s) | 37, 96, 241, 292, 312 |
| Ple19I | CGATCG | 1 cut(s) | 338 |
| PleI | GAGTC | 1 cut(s) | 128 |
| PluTI | GGCGCC | 1 cut(s) | 305 |
| PpsI | GAGTC | 1 cut(s) | 128 |
| PpuMI | RGGWCCY | 1 cut(s) | 787 |
| Psp124BI | GAGCTC | 1 cut(s) | 414 |
| Psp5II | RGGWCCY | 1 cut(s) | 787 |
| Psp6I | CCWGG | 1 cut(s) | 609 |
| PspFI | CCCAGC | 1 cut(s) | 448 |
| PspGI | CCWGG | 1 cut(s) | 609 |
| PspN4I | GGNNCC | 8 cut(s) | 13, 111, 252, 303, 392, 597, 741, 789 |
| PspPI | GGNCC | 3 cut(s) | 251, 493, 787 |
| PspPPI | RGGWCCY | 1 cut(s) | 787 |
| PsuI | RGATCY | 1 cut(s) | 390 |
| PsyI | GACNNNGTC | 1 cut(s) | 137 |
| PvuI | CGATCG | 1 cut(s) | 338 |
| PvuII | CAGCTG | 1 cut(s) | 730 |
| RsaI | GTAC | 4 cut(s) | 119, 203, 457, 515 |
| RsaNI | GTAC | 4 cut(s) | 118, 202, 456, 514 |
| SacI | GAGCTC | 1 cut(s) | 414 |
| SaqAI | TTAA | 1 cut(s) | 183 |
| SatI | GCNGC | 5 cut(s) | 36, 95, 240, 291, 311 |
| Sau3AI | GATC | 3 cut(s) | 124, 335, 390 |
| Sau96I | GGNCC | 3 cut(s) | 251, 493, 787 |
| ScaI | AGTACT | 2 cut(s) | 119, 515 |
| SchI | GAGTC | 1 cut(s) | 128 |
| ScrFI | CCNGG | 1 cut(s) | 611 |
| SduI | GDGCHC | 1 cut(s) | 414 |
| SetI | ASST | 7 cut(s) | 271, 414, 476, 732, 808, 815, 878 |
| SfaNI | GCATC | 1 cut(s) | 106 |
| SfcI | CTRYAG | 1 cut(s) | 871 |
| SfoI | GGCGCC | 1 cut(s) | 303 |
| Sfr274I | CTCGAG | 1 cut(s) | 170 |
| SinI | GGWCC | 3 cut(s) | 251, 493, 787 |
| SlaI | CTCGAG | 1 cut(s) | 170 |
| SmlI | CTYRAG | 1 cut(s) | 170 |
| SmoI | CTYRAG | 1 cut(s) | 170 |
| Sse9I | AATT | 7 cut(s) | 179, 207, 324, 427, 438, 578, 625 |
| SseBI | AGGCCT | 1 cut(s) | 86 |
| SsiI | CCGC | 6 cut(s) | 35, 107, 240, 290, 293, 311 |
| SspDI | GGCGCC | 1 cut(s) | 301 |
| SspMI | CTAG | 1 cut(s) | 407 |
| SstI | GAGCTC | 1 cut(s) | 414 |
| StuI | AGGCCT | 1 cut(s) | 86 |
| StyD4I | CCNGG | 1 cut(s) | 609 |
| TaaI | ACNGT | 3 cut(s) | 518, 571, 717 |
| TaqI | TCGA | 4 cut(s) | 164, 171, 317, 334 |
| TaqII | GACCGA | 1 cut(s) | 127 |
| TasI | AATT | 7 cut(s) | 179, 207, 324, 427, 438, 578, 625 |
| TatI | WGTACW | 3 cut(s) | 117, 455, 513 |
| TauI | GCSGC | 4 cut(s) | 38, 242, 293, 313 |
| TfiI | GAWTC | 4 cut(s) | 166, 277, 331, 535 |
| Tru1I | TTAA | 1 cut(s) | 183 |
| Tru9I | TTAA | 1 cut(s) | 183 |
| TscAI | CASTG | 2 cut(s) | 503, 661 |
| TseFI | GTSAC | 1 cut(s) | 55 |
| TseI | GCWGC | 1 cut(s) | 94 |
| Tsp45I | GTSAC | 1 cut(s) | 55 |
| TspDTI | ATGAA | 6 cut(s) | 383, 392, 500, 518, 654, 697 |
| TspGWI | ACGGA | 4 cut(s) | 56, 219, 243, 260 |
| TspRI | CASTG | 2 cut(s) | 503, 661 |
| Tth111I | GACNNNGTC | 1 cut(s) | 137 |
| VpaK11BI | GGWCC | 3 cut(s) | 251, 493, 787 |
| XapI | RAATTY | 4 cut(s) | 179, 427, 438, 578 |
| XbaI | TCTAGA | 1 cut(s) | 406 |
| XhoI | CTCGAG | 1 cut(s) | 170 |
| XmiI | GTMKAC | 2 cut(s) | 141, 228 |
| XspI | CTAG | 1 cut(s) | 407 |
| ZrmI | AGTACT | 2 cut(s) | 119, 515 |