Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000240.1

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

60472 .. 61454

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000240.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgcaagcattttctagatcagcagcagatcctatggcggaagtctcatttctcactcaaattcatgtcaccctctcaattttcctcagtgtcgatctccaccatcgatgtttgatttgttccttagatgaacacacttcatttgaatgcctgtacaaggctcaagtccccaagaacgctactgttggcaggggctgtgacgtagtttgtaaggtccagagaataatccgtgctcgggagatcttgtcagaacgcttcctcccccggccatcgagaacatattgggatttaactccaataagcgtcggcgggattcgaacccgggtgtgggggttccacacctggagactcttaccaactcgaccacctgtggtggttgcgtgtcaagcaccactgtttgtacaattcgattgggacatggatgaagttgaggacttcactgatgaacttatagacgctgaggagttgagcgaggataagaaggaggcattcgtggagtttttgaaggaggaagtaaagaacgctaagaagaagaagagggaagcgaggaagaagagaatggaggacccaaagtatcaggaagctaaaacctattatgagaatataaggctaatttataagatctacccagtacaaacaccaaacactcctttgatagagaagaaggctcgtcgtatcaacttctactacggaaatgccgatgagattatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

27.78

Weight (kDa)

8.14

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	618
AciI	CCGC	2 cut(s)	38, 309
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	60
AfaI	GTAC	3 cut(s)	155, 402, 633
AfiI	CCNNNNNNNGG	4 cut(s)	157, 235, 327, 328
AgsI	TTSAA	2 cut(s)	146, 505
AjnI	CCWGG	1 cut(s)	341
AloI	GAACNNNNNNTCC	2 cut(s)	243, 275
AluBI	AGCT	1 cut(s)	584
AluI	AGCT	1 cut(s)	584
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	2 cut(s)	49, 340
AlwI	GGATC	1 cut(s)	23
AlwNI	CAGNNNCTG	1 cut(s)	195
Ama87I	CYCGRG	2 cut(s)	234, 321
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	214, 565
AsuC2I	CCSGG	3 cut(s)	265, 322, 323
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	316
AvaI	CYCGRG	2 cut(s)	234, 321
AvaII	GGWCC	2 cut(s)	214, 565
Bbv12I	GWGCWC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	2 cut(s)	111, 277
BciT130I	CCWGG	1 cut(s)	343
BcnI	CCSGG	3 cut(s)	265, 322, 323
BcoDI	GTCTC	2 cut(s)	49, 340
BfaI	CTAG	1 cut(s)	15
BglII	AGATCT	2 cut(s)	240, 621
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	4 cut(s)	265, 322, 323, 343
Bme18I	GGWCC	2 cut(s)	214, 565
BmeT110I	CYCGRG	2 cut(s)	234, 321
BmgT120I	GGNCC	2 cut(s)	214, 565
BmiI	GGNNCC	2 cut(s)	335, 567
BmrFI	CCNGG	4 cut(s)	265, 322, 323, 343
BmrI	ACTGGG	1 cut(s)	623
BmuI	ACTGGG	1 cut(s)	623
BpmI	CTGGAG	1 cut(s)	364
Bpu10I	CCTNAGC	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	147
BpuMI	CCSGG	3 cut(s)	265, 322, 323
Bsa29I	ATCGAT	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	263, 321
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 243, 260, 273
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 235, 327, 328
Bse1I	ACTGG	1 cut(s)	629
BseBI	CCWGG	1 cut(s)	343
BseCI	ATCGAT	1 cut(s)	106
BseDI	CCNNGG	2 cut(s)	263, 321
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	4 cut(s)	157, 235, 327, 328
BseMII	CTCAG	2 cut(s)	100, 450
BseNI	ACTGG	1 cut(s)	629
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	1 cut(s)	35
BshFI	GGCC	1 cut(s)	268
BshVI	ATCGAT	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	235
BsiHKCI	CYCGRG	2 cut(s)	234, 321
BsiSI	CCGG	2 cut(s)	265, 322
BslFI	GGGAC	2 cut(s)	152, 428
BslI	CCNNNNNNNGG	4 cut(s)	157, 235, 327, 328
BsmAI	GTCTC	2 cut(s)	49, 340
BsmFI	GGGAC	2 cut(s)	152, 428
BsmI	GAATGC	2 cut(s)	152, 488
BsnI	GGCC	1 cut(s)	268
BsoBI	CYCGRG	2 cut(s)	234, 321
Bsp119I	TTCGAA	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp1407I	TGTACA	2 cut(s)	153, 400
Bsp143I	GATC	5 cut(s)	17, 28, 94, 240, 621
BspACI	CCGC	2 cut(s)	38, 309
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	2 cut(s)	99, 451
BspDI	ATCGAT	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	335, 567
BspPI	GGATC	1 cut(s)	23
BspT104I	TTCGAA	1 cut(s)	316
BsrGI	TGTACA	2 cut(s)	153, 400
BsrI	ACTGG	1 cut(s)	629
BssECI	CCNNGG	2 cut(s)	263, 321
BssMI	GATC	5 cut(s)	17, 28, 94, 240, 621
Bst2UI	CCWGG	1 cut(s)	343
Bst4CI	ACNGT	2 cut(s)	184, 396
Bst6I	CTCTTC	2 cut(s)	530, 548
BstAUI	TGTACA	2 cut(s)	153, 400
BstBI	TTCGAA	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	86, 124, 459, 525
BstENI	CCTNNNNNAGG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	5 cut(s)	20, 31, 97, 243, 624
BstMAI	GTCTC	2 cut(s)	49, 340
BstMBI	GATC	5 cut(s)	17, 28, 94, 240, 621
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	343
BstSCI	CCNGG	4 cut(s)	263, 320, 321, 341
BstV1I	GCAGC	1 cut(s)	35
BstX2I	RGATCY	3 cut(s)	28, 240, 621
BstYI	RGATCY	3 cut(s)	28, 240, 621
Bsu15I	ATCGAT	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	268
BsuTUI	ATCGAT	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	427
BtsIMutI	CAGTG	3 cut(s)	94, 392, 438
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	214, 565
Cfr9I	CCCGGG	1 cut(s)	321
ClaI	ATCGAT	1 cut(s)	106
CseI	GACGC	2 cut(s)	292, 464
Csp6I	GTAC	3 cut(s)	154, 401, 632
CviAII	CATG	2 cut(s)	65, 418
CviJI	RGCY	6 cut(s)	161, 195, 268, 584, 610, 668
CviKI_1	RGCY	6 cut(s)	161, 195, 268, 584, 610, 668
CviQI	GTAC	3 cut(s)	154, 401, 632
DdeI	CTNAG	4 cut(s)	86, 124, 459, 525
DpnI	GATC	5 cut(s)	19, 30, 96, 242, 623
DpnII	GATC	5 cut(s)	17, 28, 94, 240, 621
EaeI	YGGCCR	1 cut(s)	266
Eam1104I	CTCTTC	2 cut(s)	530, 548
EarI	CTCTTC	2 cut(s)	530, 548
EciI	GGCGGA	1 cut(s)	53
Eco47I	GGWCC	2 cut(s)	214, 565
Eco88I	CYCGRG	2 cut(s)	234, 321
EcoNI	CCTNNNNNAGG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	341
FaeI	CATG	2 cut(s)	68, 421
FaiI	YATR	8 cut(s)	35, 66, 280, 419, 452, 597, 605, 618
FaqI	GGGAC	2 cut(s)	152, 428
FatI	CATG	2 cut(s)	64, 417
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	2 cut(s)	265, 322
HgaI	GACGC	2 cut(s)	292, 464
Hin1II	CATG	2 cut(s)	68, 421
HinfI	GANTC	2 cut(s)	313, 348
HpaII	CCGG	2 cut(s)	265, 322
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	5 cut(s)	15, 217, 236, 273, 578
Hpy99I	CGWCG	2 cut(s)	308, 675
HpyAV	CCTTC	3 cut(s)	475, 499, 658
HpyCH4III	ACNGT	2 cut(s)	184, 396
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	4 cut(s)	86, 124, 459, 525
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	68, 421
Kzo9I	GATC	5 cut(s)	17, 28, 94, 240, 621
Lsp1109I	GCAGC	1 cut(s)	35
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	67, 197
MalI	GATC	5 cut(s)	19, 30, 96, 242, 623
MboI	GATC	5 cut(s)	17, 28, 94, 240, 621
MboII	GAAGA	6 cut(s)	541, 544, 547, 562, 565, 673
MflI	RGATCY	3 cut(s)	28, 240, 621
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	4 cut(s)	60, 78, 404, 612
MlyI	GAGTC	1 cut(s)	342
MseI	TTAA	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	145
MspI	CCGG	2 cut(s)	265, 322
MspR9I	CCNGG	4 cut(s)	265, 322, 323, 343
Mva1269I	GAATGC	2 cut(s)	152, 488
MvaI	CCWGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	386
NciI	CCSGG	3 cut(s)	265, 322, 323
NdeII	GATC	5 cut(s)	17, 28, 94, 240, 621
NlaIII	CATG	2 cut(s)	68, 421
NlaIV	GGNNCC	2 cut(s)	335, 567
NmuCI	GTSAC	2 cut(s)	67, 197
NspV	TTCGAA	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PctI	GAATGC	2 cut(s)	152, 488
PfeI	GAWTC	1 cut(s)	313
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
PpuMI	RGGWCCY	1 cut(s)	565
PsiI	TTATAA	1 cut(s)	618
Psp5II	RGGWCCY	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	335, 567
PspPI	GGNCC	2 cut(s)	214, 565
PspPPI	RGGWCCY	1 cut(s)	565
PstNI	CAGNNNCTG	1 cut(s)	195
PsuI	RGATCY	3 cut(s)	28, 240, 621
RsaI	GTAC	3 cut(s)	155, 402, 633
RsaNI	GTAC	3 cut(s)	154, 401, 632
RseI	CAYNNNNRTG	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	5 cut(s)	17, 28, 94, 240, 621
Sau96I	GGNCC	2 cut(s)	214, 565
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	4 cut(s)	265, 322, 323, 343
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	6 cut(s)	204, 216, 344, 370, 586, 593
SfuI	TTCGAA	1 cut(s)	316
SinI	GGWCC	2 cut(s)	214, 565
SmaI	CCCGGG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
Sse9I	AATT	4 cut(s)	60, 78, 404, 612
SsiI	CCGC	2 cut(s)	38, 309
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	4 cut(s)	263, 320, 321, 341
TaaI	ACNGT	2 cut(s)	184, 396
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	6 cut(s)	93, 106, 272, 316, 361, 408
TasI	AATT	4 cut(s)	60, 78, 404, 612
TatI	WGTACW	3 cut(s)	153, 400, 631
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	3 cut(s)	94, 399, 445
TseFI	GTSAC	2 cut(s)	67, 197
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	2 cut(s)	67, 197
TspDTI	ATGAA	5 cut(s)	53, 129, 144, 438, 459
TspGWI	ACGGA	2 cut(s)	218, 705
TspMI	CCCGGG	1 cut(s)	321
TspRI	CASTG	3 cut(s)	94, 399, 445
VpaK11BI	GGWCC	2 cut(s)	214, 565
XagI	CCTNNNNNAGG	1 cut(s)	155
XapI	RAATTY	1 cut(s)	60
XbaI	TCTAGA	1 cut(s)	14
XmaI	CCCGGG	1 cut(s)	321
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.