Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

5541565 .. 5543284

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGAAAAAATGGAACCATTCCAGTCCTACCTCTTCCTAAGAAGGTGCCCAAAATCTTGGTTGCTGGTAGTCATGCTGATAATCTGGGTTACCAGTGTGGTGGATGGACAATGGCTTGGCAAGGATTCAGTGGCAACAACAAAACAAGGGGAACCACCATCCTCGGTGCTATCAAATCAACGGTTGATTCAAGCACAGAAGTTGTCTATCTTGAGAATCCTGATAGTGATTTTGTCAAGTCCAACAACTTTGAATATGCCATTGTTGTTGTTGGTGAGCACCCTTATGCTGAGACTGATGGAGACAGTATGAACTTAACTATGGCGGATCCTGGCCCAAGTGTCATCACCAGTGTGCGTGAAGCTGTCAAGTGCATTGTTATTATAATTTCTGGCAGACCTGTTGTGATTGAACTGTATGTTTCATCAATTGATGCCCTGGTAGCAGCATGGTTGCCAGGAACTGAAGGCCAAGGAATCACTGATGTCCTTTATGATGAGCATGGATTCAGTGGAAAGCTTTCGAGAACATGGTTCAGACGTGTAGATCAGCTCCCGATGAAAATTGGGGATCCACACTATGATCCTCTTTTCCCTTTTGGGTTTGGACTTGAAACTGAGTCAGTTAAGGAGCTCGTAACAAGATCAACTTCAGCTGATGTATTTAGAAGGCCATGGACATTTCTCGTTGCTGTTGCTCTAATTATCAGCTTAAGACTAGAGTTTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

244

Amino Acids

26.54

Weight (kDa)

5.25

Isoelectric Point (pI)

32.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3_C	PF01915	8 - 205	2.5e-32	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	46
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	5 cut(s)	323, 336, 566, 578, 579
AcuI	CTGAAG	2 cut(s)	486, 636
AflII	CTTAAG	1 cut(s)	712
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	4 cut(s)	192, 254, 413, 614
AjiI	CACGTC	1 cut(s)	542
AjnI	CCWGG	3 cut(s)	331, 438, 457
AleI	CACNNNNGTG	1 cut(s)	353
AluBI	AGCT	6 cut(s)	365, 520, 553, 634, 656, 711
AluI	AGCT	6 cut(s)	365, 520, 553, 634, 656, 711
Alw21I	GWGCWC	2 cut(s)	282, 636
Alw26I	GTCTC	2 cut(s)	287, 297
AlwI	GGATC	5 cut(s)	323, 336, 566, 578, 579
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	3 cut(s)	334, 469, 671
ApeKI	GCWGC	1 cut(s)	446
Asp700I	GAANNNNTTC	1 cut(s)	520
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	287, 340
BaeGI	GKGCMC	1 cut(s)	51
BamHI	GGATCC	2 cut(s)	328, 571
BanI	GGYRCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	636
Bbv12I	GWGCWC	2 cut(s)	282, 636
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	3 cut(s)	99, 167, 293
BciT130I	CCWGG	3 cut(s)	333, 440, 459
BcoDI	GTCTC	2 cut(s)	287, 297
BfaI	CTAG	1 cut(s)	719
BfrI	CTTAAG	1 cut(s)	712
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	3 cut(s)	333, 440, 459
BmgBI	CACGTC	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	5 cut(s)	16, 48, 154, 330, 573
BmrFI	CCNGG	3 cut(s)	333, 440, 459
BmsI	GCATC	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	233
BsaJI	CCNNGG	4 cut(s)	163, 438, 472, 674
Bse1I	ACTGG	3 cut(s)	23, 94, 351
BseBI	CCWGG	3 cut(s)	333, 440, 459
BseDI	CCNNGG	4 cut(s)	163, 438, 472, 674
BseGI	GGATG	2 cut(s)	110, 159
BseMII	CTCAG	2 cut(s)	282, 609
BseNI	ACTGG	3 cut(s)	23, 94, 351
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	458
BshFI	GGCC	3 cut(s)	336, 471, 673
BshNI	GGYRCC	1 cut(s)	46
BsiHKAI	GWGCWC	2 cut(s)	282, 636
BsmAI	GTCTC	2 cut(s)	287, 297
BsnI	GGCC	3 cut(s)	336, 471, 673
Bsp1286I	GDGCHC	3 cut(s)	51, 282, 636
Bsp143I	GATC	5 cut(s)	328, 547, 571, 583, 644
Bsp19I	CCATGG	1 cut(s)	674
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	3 cut(s)	336, 471, 673
BspCNI	CTCAG	2 cut(s)	283, 610
BspLI	GGNNCC	5 cut(s)	16, 48, 154, 330, 573
BspPI	GGATC	5 cut(s)	323, 336, 566, 578, 579
BspT107I	GGYRCC	1 cut(s)	46
BspTI	CTTAAG	1 cut(s)	712
BsrI	ACTGG	3 cut(s)	23, 94, 351
BssECI	CCNNGG	4 cut(s)	163, 438, 472, 674
BssMI	GATC	5 cut(s)	328, 547, 571, 583, 644
BssT1I	CCWWGG	2 cut(s)	472, 674
Bst2UI	CCWGG	3 cut(s)	333, 440, 459
Bst4CI	ACNGT	3 cut(s)	184, 308, 417
Bst6I	CTCTTC	1 cut(s)	39
BstAFI	CTTAAG	1 cut(s)	712
BstDEI	CTNAG	3 cut(s)	39, 291, 618
BstDSI	CCRYGG	1 cut(s)	674
BstEII	GGTNACC	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	110, 159
BstKTI	GATC	5 cut(s)	331, 550, 574, 586, 647
BstMAI	GTCTC	2 cut(s)	287, 297
BstMBI	GATC	5 cut(s)	328, 547, 571, 583, 644
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	3 cut(s)	333, 440, 459
BstPI	GGTNACC	1 cut(s)	89
BstSCI	CCNGG	3 cut(s)	331, 438, 457
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	458
BstX2I	RGATCY	2 cut(s)	328, 571
BstXI	CCANNNNNNTGG	2 cut(s)	58, 101
BstYI	RGATCY	2 cut(s)	328, 571
BsuRI	GGCC	3 cut(s)	336, 471, 673
BtgI	CCRYGG	1 cut(s)	674
BtrI	CACGTC	1 cut(s)	542
BtsCI	GGATG	2 cut(s)	110, 159
BtsIMutI	CAGTG	5 cut(s)	101, 136, 358, 480, 517
CaiI	CAGNNNCTG	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	335
CviAII	CATG	5 cut(s)	74, 450, 503, 531, 675
DdeI	CTNAG	3 cut(s)	39, 291, 618
DpnI	GATC	5 cut(s)	330, 549, 573, 585, 646
DpnII	GATC	5 cut(s)	328, 547, 571, 583, 644
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	341
Ecl136II	GAGCTC	1 cut(s)	634
Eco130I	CCWWGG	2 cut(s)	472, 674
Eco24I	GRGCYC	1 cut(s)	636
Eco53kI	GAGCTC	1 cut(s)	634
Eco57I	CTGAAG	2 cut(s)	486, 636
Eco91I	GGTNACC	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	634
EcoO65I	GGTNACC	1 cut(s)	89
EcoRII	CCWGG	3 cut(s)	331, 438, 457
EcoT14I	CCWWGG	2 cut(s)	472, 674
EcoT38I	GRGCYC	1 cut(s)	636
ErhI	CCWWGG	2 cut(s)	472, 674
FaeI	CATG	5 cut(s)	77, 453, 506, 534, 678
FalI	AAGNNNNNCTT	2 cut(s)	634, 666
FatI	CATG	5 cut(s)	73, 449, 502, 530, 674
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	2 cut(s)	117, 146
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	1 cut(s)	447
FspBI	CTAG	1 cut(s)	719
GluI	GCNGC	1 cut(s)	447
HaeIII	GGCC	3 cut(s)	336, 471, 673
Hin1II	CATG	5 cut(s)	77, 453, 506, 534, 678
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	6 cut(s)	126, 188, 217, 477, 507, 620
HphI	GGTGA	2 cut(s)	287, 340
Hpy188I	TCNGA	1 cut(s)	539
Hpy188III	TCNNGA	4 cut(s)	212, 221, 525, 556
HpyAV	CCTTC	3 cut(s)	37, 461, 663
HpyCH4III	ACNGT	3 cut(s)	184, 308, 417
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	1 cut(s)	375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	3 cut(s)	39, 291, 618
HpySE526I	ACGT	1 cut(s)	541
Hsp92II	CATG	5 cut(s)	77, 453, 506, 534, 678
Kzo9I	GATC	5 cut(s)	328, 547, 571, 583, 644
LmnI	GCTCC	2 cut(s)	558, 631
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	719
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	2 cut(s)	89, 637
MalI	GATC	5 cut(s)	330, 549, 573, 585, 646
MboI	GATC	5 cut(s)	328, 547, 571, 583, 644
MboII	GAAGA	1 cut(s)	26
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	2 cut(s)	328, 571
MhlI	GDGCHC	3 cut(s)	51, 282, 636
MluCI	AATT	4 cut(s)	387, 429, 564, 702
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	3 cut(s)	42, 173, 597
MroXI	GAANNNNTTC	1 cut(s)	520
MseI	TTAA	3 cut(s)	317, 627, 713
MslI	CAYNNNNRTG	2 cut(s)	285, 353
MspA1I	CMGCKG	1 cut(s)	656
MspCI	CTTAAG	1 cut(s)	712
MspR9I	CCNGG	3 cut(s)	333, 440, 459
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	3 cut(s)	333, 440, 459
MwoI	GCNNNNNNNGC	1 cut(s)	443
NcoI	CCATGG	1 cut(s)	674
NdeII	GATC	5 cut(s)	328, 547, 571, 583, 644
NlaIII	CATG	5 cut(s)	77, 453, 506, 534, 678
NlaIV	GGNNCC	5 cut(s)	16, 48, 154, 330, 573
OliI	CACNNNNGTG	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	520
PfeI	GAWTC	5 cut(s)	126, 188, 217, 477, 507
PkrI	GCNGC	1 cut(s)	448
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
PsiI	TTATAA	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	636
Psp6I	CCWGG	3 cut(s)	331, 438, 457
PspEI	GGTNACC	1 cut(s)	89
PspGI	CCWGG	3 cut(s)	331, 438, 457
PspN4I	GGNNCC	5 cut(s)	16, 48, 154, 330, 573
PspPI	GGNCC	1 cut(s)	335
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	2 cut(s)	328, 571
PvuII	CAGCTG	1 cut(s)	656
RseI	CAYNNNNRTG	2 cut(s)	285, 353
SacI	GAGCTC	1 cut(s)	636
SaqAI	TTAA	3 cut(s)	317, 627, 713
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	5 cut(s)	328, 547, 571, 583, 644
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	3 cut(s)	333, 440, 459
SduI	GDGCHC	3 cut(s)	51, 282, 636
SfaNI	GCATC	1 cut(s)	424
SmiMI	CAYNNNNRTG	2 cut(s)	285, 353
SmlI	CTYRAG	2 cut(s)	212, 712
SmoI	CTYRAG	2 cut(s)	212, 712
Sse9I	AATT	4 cut(s)	387, 429, 564, 702
SsiI	CCGC	1 cut(s)	326
SspMI	CTAG	1 cut(s)	719
SstI	GAGCTC	1 cut(s)	636
StyD4I	CCNGG	3 cut(s)	331, 438, 457
StyI	CCWWGG	2 cut(s)	472, 674
TaaI	ACNGT	3 cut(s)	184, 308, 417
TaiI	ACGT	1 cut(s)	544
TaqI	TCGA	1 cut(s)	524
TasI	AATT	4 cut(s)	387, 429, 564, 702
TfiI	GAWTC	5 cut(s)	126, 188, 217, 477, 507
Tru1I	TTAA	3 cut(s)	317, 627, 713
Tru9I	TTAA	3 cut(s)	317, 627, 713
TscAI	CASTG	5 cut(s)	101, 136, 358, 487, 517
TseI	GCWGC	1 cut(s)	446
TspDTI	ATGAA	3 cut(s)	326, 414, 575
TspRI	CASTG	5 cut(s)	101, 136, 358, 487, 517
Vha464I	CTTAAG	1 cut(s)	712
XmnI	GAANNNNTTC	1 cut(s)	520
XspI	CTAG	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.