Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8385859.1

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1173

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8385859.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 493 bp

atgatccaaccttttcaagaagacgcagatttggctgagaggattggtgtggcaactgctcttgaagtcagggcgagcggcattccgtacacttttgctccctgtgtggctgtatgtagagatcccagatggggaagatgctatgagagttacagtgaagacactgaaactgttcgaaagatgacatctattatttcaggcttgcaggggaagccaccccaaggacatgaaaagggttacccttttgtaatgggaagaaacaacactattgcatgtgccaagcattttgttggagatgggggtacacataaaggtctaaatgaggggaataccatatcatcttatgatgacttagagaggattcatatggcaccatatctggactgtatttctcaaggagtttccactgtcatggcatccttttccagctggaatggaagtagactacacgctgatcgctttcttctgacagaagttctgaaagataagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

164

Amino Acids

18.11

Weight (kDa)

5.93

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	370
AccBSI	CCGCTC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	442
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	1 cut(s)	116
AfaI	GTAC	2 cut(s)	89, 304
AfiI	CCNNNNNNNGG	2 cut(s)	131, 221
AgsI	TTSAA	2 cut(s)	17, 65
AluBI	AGCT	2 cut(s)	429, 490
AluI	AGCT	2 cut(s)	429, 490
AlwI	GGATC	1 cut(s)	116
Asp700I	GAANNNNTTC	1 cut(s)	171
AsuII	TTCGAA	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	370
BbsI	GAAGAC	2 cut(s)	27, 165
BccI	CCATC	2 cut(s)	123, 290
BfaI	CTAG	1 cut(s)	491
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	372
BmsI	GCATC	2 cut(s)	128, 425
BpiI	GAAGAC	2 cut(s)	27, 165
Bpu14I	TTCGAA	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 221
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	2 cut(s)	131, 221
BseMII	CTCAG	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	131, 221
BsmI	GAATGC	1 cut(s)	81
Bsp119I	TTCGAA	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	3, 121, 454
BspACI	CCGC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	370
BsrBI	CCGCTC	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	3 cut(s)	3, 121, 454
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	4 cut(s)	155, 172, 386, 409
BstBI	TTCGAA	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	76, 203
BstDEI	CTNAG	2 cut(s)	36, 352
BstEII	GGTNACC	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	416
BstKTI	GATC	3 cut(s)	6, 124, 457
BstMBI	GATC	3 cut(s)	3, 121, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 211
BstNSI	RCATGY	1 cut(s)	276
BstPI	GGTNACC	1 cut(s)	236
BstV2I	GAAGAC	2 cut(s)	27, 165
BstX2I	RGATCY	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	416
BtsIMutI	CAGTG	3 cut(s)	160, 162, 405
Cac8I	GCNNGC	2 cut(s)	76, 203
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	88, 303
CviAII	CATG	3 cut(s)	227, 273, 412
CviJI	RGCY	6 cut(s)	35, 110, 201, 214, 429, 490
CviKI_1	RGCY	6 cut(s)	35, 110, 201, 214, 429, 490
CviQI	GTAC	2 cut(s)	88, 303
DdeI	CTNAG	2 cut(s)	36, 352
DpnI	GATC	3 cut(s)	5, 123, 456
DpnII	GATC	3 cut(s)	3, 121, 454
Eco130I	CCWWGG	1 cut(s)	220
Eco91I	GGTNACC	1 cut(s)	236
EcoO65I	GGTNACC	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	3 cut(s)	230, 276, 415
FatI	CATG	3 cut(s)	226, 272, 411
FauNDI	CATATG	1 cut(s)	366
FblI	GTMKAC	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	1 cut(s)	491
GluI	GCNGC	1 cut(s)	79
HgaI	GACGC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	230, 276, 415
HinfI	GANTC	1 cut(s)	361
Hpy166II	GTNNAC	3 cut(s)	90, 305, 443
Hpy188I	TCNGA	2 cut(s)	468, 480
Hpy188III	TCNNGA	3 cut(s)	17, 62, 380
Hpy8I	GTNNAC	3 cut(s)	90, 305, 443
HpyCH4III	ACNGT	4 cut(s)	155, 172, 386, 409
HpyCH4V	TGCA	2 cut(s)	205, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 211
HpyF3I	CTNAG	2 cut(s)	36, 352
Hsp92II	CATG	3 cut(s)	230, 276, 415
Kzo9I	GATC	3 cut(s)	3, 121, 454
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	8 cut(s)	55, 115, 139, 183, 191, 365, 415, 439
LweI	GCATC	2 cut(s)	128, 425
MaeI	CTAG	1 cut(s)	491
MaeIII	GTNAC	2 cut(s)	149, 236
MalI	GATC	3 cut(s)	5, 123, 456
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	3 cut(s)	3, 121, 454
MboII	GAAGA	5 cut(s)	32, 147, 170, 267, 455
MflI	RGATCY	1 cut(s)	121
MmeI	TCCRAC	2 cut(s)	31, 271
MnlI	CCTC	3 cut(s)	33, 316, 351
MroXI	GAANNNNTTC	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	32, 211
NdeI	CATATG	1 cut(s)	366
NdeII	GATC	3 cut(s)	3, 121, 454
NlaIII	CATG	3 cut(s)	230, 276, 415
NlaIV	GGNNCC	1 cut(s)	372
NspI	RCATGY	1 cut(s)	276
NspV	TTCGAA	1 cut(s)	175
PctI	GAATGC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	80
PspEI	GGTNACC	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	429
RsaI	GTAC	2 cut(s)	89, 304
RsaNI	GTAC	2 cut(s)	88, 303
RseI	CAYNNNNRTG	1 cut(s)	410
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	3 cut(s)	3, 121, 454
SetI	ASST	4 cut(s)	13, 316, 431, 492
SfaNI	GCATC	2 cut(s)	128, 425
SfuI	TTCGAA	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
SsiI	CCGC	1 cut(s)	78
SspMI	CTAG	1 cut(s)	491
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	4 cut(s)	155, 172, 386, 409
TaqI	TCGA	1 cut(s)	175
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	361
TscAI	CASTG	3 cut(s)	160, 169, 412
TspDTI	ATGAA	2 cut(s)	243, 353
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	3 cut(s)	160, 169, 412
XceI	RCATGY	1 cut(s)	276
XmiI	GTMKAC	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.