Rmu_sc0014052.1_g000004

xylan 1,4-beta-xylosidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014052.1
OG0000625
Physical Location & Seq
Reverse (-)
8754 .. 9248
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014052.1_g000004.1.cds

Sequence Viewer

Length: 495 bp
ctgaaaacaggaaccacgattctaggtggcgtcatagctacagtttacgcgacaacagaagttgtgcacagtttaaatccagatcctaattttatccaggcaagcaacattgactatgccattgttgctgttggtgaacccccttacgcagagacgaaaggggataatttgaatttgaccattccagaaccaggcccaagcatcattagcaatgtctgcagcgtagtccagtgtgttgttattgttgtctctggccgtcctcttgtgattgagccctatcttccaatgatggatgcccttgtggctgcatggctacctggaactgaaggccaaggagttgctgatgttcttttcggggattatggattcactggaaagcttgctaggacttggttcaagagagtagaccagctccctatgaatgttggtgacaaaaattatgatcccctcttcccctttggttttggaatcacaactgaaccacatatgaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

164

Amino Acids

17.62

Weight (kDa)

4.58

Isoelectric Point (pI)

28.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 405
AccII CGCG 1 cut(s) 50
AclWI GGATC 2 cut(s) 77, 437
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 2 cut(s) 172, 397
AjnI CCWGG 3 cut(s) 96, 190, 316
AluBI AGCT 3 cut(s) 38, 379, 412
AluI AGCT 3 cut(s) 38, 379, 412
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 2 cut(s) 146, 253
Alw44I GTGCAC 1 cut(s) 65
AlwI GGATC 2 cut(s) 77, 437
AoxI GGCC 3 cut(s) 193, 253, 328
ApaLI GTGCAC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 219, 305
ApoI RAATTY 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 2 cut(s) 146, 440
BaeGI GKGCMC 1 cut(s) 69
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 231, 292
BccI CCATC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 240
BciT130I CCWGG 3 cut(s) 98, 192, 318
BcoDI GTCTC 2 cut(s) 146, 253
BfaI CTAG 2 cut(s) 23, 384
BfmI CTRYAG 2 cut(s) 39, 217
BglI GCCNNNNNGGC 1 cut(s) 302
BisI GCNGC 2 cut(s) 220, 306
BlsI GCNGC 2 cut(s) 221, 307
Bme1390I CCNGG 3 cut(s) 98, 192, 318
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 3 cut(s) 98, 192, 318
BmsI GCATC 2 cut(s) 210, 283
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 331
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 2 cut(s) 229, 376
Bse3DI GCAATG 1 cut(s) 217
BseBI CCWGG 3 cut(s) 98, 192, 318
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 217
BseNI ACTGG 2 cut(s) 229, 376
BseSI GKGCMC 1 cut(s) 69
BseXI GCAGC 2 cut(s) 231, 292
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 3 cut(s) 195, 255, 330
BsiHKAI GWGCWC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 2 cut(s) 146, 253
BsmBI CGTCTC 1 cut(s) 146
BsnI GGCC 3 cut(s) 195, 255, 330
Bsp1286I GDGCHC 2 cut(s) 69, 276
Bsp143I GATC 2 cut(s) 82, 442
BspANI GGCC 3 cut(s) 195, 255, 330
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 13
BspMAI CTGCAG 1 cut(s) 221
BspPI GGATC 2 cut(s) 77, 437
BsrDI GCAATG 1 cut(s) 217
BsrI ACTGG 2 cut(s) 229, 376
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 2 cut(s) 82, 442
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 3 cut(s) 98, 192, 318
Bst4CI ACNGT 2 cut(s) 43, 71
Bst6I CTCTTC 1 cut(s) 455
BstACI GRCGYC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 103, 381
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 1 cut(s) 50
BstKTI GATC 2 cut(s) 85, 445
BstMAI GTCTC 2 cut(s) 146, 253
BstMBI GATC 2 cut(s) 82, 442
BstMWI GCNNNNNNNGC 4 cut(s) 125, 207, 216, 302
BstNI CCWGG 3 cut(s) 98, 192, 318
BstSCI CCNGG 3 cut(s) 96, 190, 316
BstSFI CTRYAG 2 cut(s) 39, 217
BstSLI GKGCMC 1 cut(s) 69
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 231, 292
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 3 cut(s) 195, 255, 330
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 236, 369
Cac8I GCNNGC 2 cut(s) 103, 381
Cfr13I GGNCC 1 cut(s) 194
CseI GACGC 1 cut(s) 19
CviAII CATG 1 cut(s) 309
CviJI RGCY 9 cut(s) 38, 195, 255, 274, 305, 313, 330, 379, 412
CviKI_1 RGCY 9 cut(s) 38, 195, 255, 274, 305, 313, 330, 379, 412
DpnI GATC 2 cut(s) 84, 444
DpnII GATC 2 cut(s) 82, 442
DraI TTTAAA 1 cut(s) 75
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 276
Eco57I CTGAAG 1 cut(s) 345
EcoRII CCWGG 3 cut(s) 96, 190, 316
EcoT14I CCWWGG 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 1 cut(s) 312
FaiI YATR 8 cut(s) 35, 117, 310, 363, 419, 441, 486, 488
FatI CATG 1 cut(s) 308
FauNDI CATATG 1 cut(s) 486
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 2 cut(s) 220, 306
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 2 cut(s) 220, 306
FspBI CTAG 2 cut(s) 23, 384
GluI GCNGC 2 cut(s) 220, 306
HaeIII GGCC 3 cut(s) 195, 255, 330
HgaI GACGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 3 cut(s) 19, 366, 468
HphI GGTGA 2 cut(s) 146, 440
Hpy166II GTNNAC 4 cut(s) 46, 67, 137, 406
Hpy188III TCNNGA 3 cut(s) 80, 185, 397
Hpy8I GTNNAC 4 cut(s) 46, 67, 137, 406
HpyAV CCTTC 1 cut(s) 320
HpyCH4III ACNGT 2 cut(s) 43, 71
HpyCH4V TGCA 3 cut(s) 67, 219, 308
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 207, 216, 302
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 1 cut(s) 312
Kzo9I GATC 2 cut(s) 82, 442
LmnI GCTCC 1 cut(s) 417
Lsp1109I GCAGC 2 cut(s) 231, 292
LweI GCATC 2 cut(s) 210, 283
MaeI CTAG 2 cut(s) 23, 384
MaeIII GTNAC 1 cut(s) 428
MalI GATC 2 cut(s) 84, 444
MboI GATC 2 cut(s) 82, 442
MboII GAAGA 2 cut(s) 272, 442
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 2 cut(s) 69, 276
MluCI AATT 4 cut(s) 88, 166, 172, 436
MnlI CCTC 3 cut(s) 270, 458, 483
MseI TTAA 1 cut(s) 74
MspR9I CCNGG 3 cut(s) 98, 192, 318
MvaI CCWGG 3 cut(s) 98, 192, 318
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 4 cut(s) 125, 207, 216, 302
NdeI CATATG 1 cut(s) 486
NdeII GATC 2 cut(s) 82, 442
NlaIII CATG 1 cut(s) 312
NlaIV GGNNCC 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 428
PfeI GAWTC 3 cut(s) 19, 366, 468
PkrI GCNGC 2 cut(s) 221, 307
Psp6I CCWGG 3 cut(s) 96, 190, 316
PspGI CCWGG 3 cut(s) 96, 190, 316
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 194
PstI CTGCAG 1 cut(s) 221
PsuI RGATCY 1 cut(s) 82
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 2 cut(s) 220, 306
Sau3AI GATC 2 cut(s) 82, 442
Sau96I GGNCC 1 cut(s) 194
ScrFI CCNGG 3 cut(s) 98, 192, 318
SduI GDGCHC 2 cut(s) 69, 276
SetI ASST 6 cut(s) 28, 40, 319, 381, 414, 494
SfaNI GCATC 2 cut(s) 210, 283
SfcI CTRYAG 2 cut(s) 39, 217
Sse9I AATT 4 cut(s) 88, 166, 172, 436
SspMI CTAG 2 cut(s) 23, 384
StyD4I CCNGG 3 cut(s) 96, 190, 316
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 43, 71
TasI AATT 4 cut(s) 88, 166, 172, 436
TfiI GAWTC 3 cut(s) 19, 366, 468
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 2 cut(s) 236, 376
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 2 cut(s) 219, 305
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 1 cut(s) 434
TspRI CASTG 2 cut(s) 236, 376
VneI GTGCAC 1 cut(s) 65
XapI RAATTY 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 2 cut(s) 23, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.