pycom11g06820

Belongs to the glycosyl hydrolase 3 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
5219446 .. 5220984
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g06820.4

Sequence Viewer

Length: 615 bp
ATGGACAAAGTCAACGACTTGAATTGCATATACCAAAACCCGAACGAACCCATTGAAGCGCGAGTGAAGGACCTCCTTGCGCGCATGACTTTGAGAGAGAAGGCCGGCCAGATGACCCAAATCGAGCGCCGGGTCTCAACCCCAGAAGCCATCAGAGACTTCTCAATCGGGAGTATACTCAGTTCTGGAGACAGTGTGCCCTTTGAGAATGAATTATCAAAGGACTGGGCAGATATGGTCGACGGGTTTCAGAGGTCCGCACTTGAAAACCGGCTCGGAATACCGATTATATATGGGATTGATGCGGTTCATGGGAACAACAATGTATATGGTGCCACCATATTCCCTCACAATGTTGGTCTTGGGGCATCCAGAGATGCTGATTTGGCTGAAAGGATTGGTGCTGCAACTGCTCTTGAAGTCAGGGCCAGTGGCATTCACTATAATTTAGCTCCCTGTGTTGCTGTTTGCAAAGATCCCAGATGGGGAAGATGCTATGAGAGTTTCAGTGAAGACACTGAAATTGTTAGAAAGATGACTACCATTGTGACAGGCTTGCAGGGGCAGCCACCCGAAGGACATCCAAAGGGCTACCCTTTTGTAATGGGAAGGTAA

Protein Analysis

205

Amino Acids

22.48

Weight (kDa)

5.42

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccI GTMKAC 2 cut(s) 175, 240
AccII CGCG 2 cut(s) 61, 82
AciI CCGC 2 cut(s) 258, 305
AclWI GGATC 1 cut(s) 470
AcoI YGGCCR 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 485, 575
AgsI TTSAA 4 cut(s) 22, 56, 266, 419
AluBI AGCT 1 cut(s) 452
AluI AGCT 1 cut(s) 452
Alw26I GTCTC 3 cut(s) 139, 150, 183
AlwI GGATC 1 cut(s) 470
AoxI GGCC 3 cut(s) 102, 106, 426
ApeKI GCWGC 2 cut(s) 404, 565
AspLEI GCGC 4 cut(s) 61, 82, 84, 129
AspS9I GGNCC 3 cut(s) 70, 255, 426
AsuC2I CCSGG 1 cut(s) 131
AvaII GGWCC 2 cut(s) 70, 255
BaeGI GKGCMC 1 cut(s) 201
BanI GGYRCC 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 519
BbvI GCAGC 2 cut(s) 391, 577
BccI CCATC 2 cut(s) 158, 477
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 3 cut(s) 139, 150, 183
BfoI RGCGCY 1 cut(s) 130
BisI GCNGC 2 cut(s) 405, 566
BlsI GCNGC 2 cut(s) 406, 567
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 2 cut(s) 70, 255
BmgT120I GGNCC 3 cut(s) 70, 255, 426
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 131
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 4 cut(s) 292, 367, 377, 482
BmuI ACTGGG 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 519
BpmI CTGGAG 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 139
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 575
Bse118I RCCGGY 2 cut(s) 104, 270
Bse1I ACTGG 2 cut(s) 230, 429
BseGI GGATG 2 cut(s) 368, 580
BseLI CCNNNNNNNGG 2 cut(s) 485, 575
BseMII CTCAG 1 cut(s) 193
BseNI ACTGG 2 cut(s) 230, 429
BsePI GCGCGC 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 201
BseXI GCAGC 2 cut(s) 391, 577
Bsh1236I CGCG 2 cut(s) 61, 82
BshFI GGCC 3 cut(s) 104, 108, 428
BshNI GGYRCC 1 cut(s) 332
BsiSI CCGG 3 cut(s) 105, 130, 271
BslI CCNNNNNNNGG 2 cut(s) 485, 575
BsmAI GTCTC 3 cut(s) 139, 150, 183
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 3 cut(s) 104, 108, 428
Bso31I GGTCTC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 1 cut(s) 475
BspACI CCGC 2 cut(s) 258, 305
BspANI GGCC 3 cut(s) 104, 108, 428
BspCNI CTCAG 1 cut(s) 192
BspFNI CGCG 2 cut(s) 61, 82
BspLI GGNNCC 1 cut(s) 334
BspPI GGATC 1 cut(s) 470
BspT107I GGYRCC 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 139
BsrFI RCCGGY 2 cut(s) 104, 270
BsrI ACTGG 2 cut(s) 230, 429
BssAI RCCGGY 2 cut(s) 104, 270
BssHII GCGCGC 1 cut(s) 80
BssMI GATC 1 cut(s) 475
BssNAI GTATAC 1 cut(s) 176
Bst1107I GTATAC 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 194
BstC8I GCNNGC 3 cut(s) 82, 106, 557
BstDEI CTNAG 1 cut(s) 179
BstF5I GGATG 2 cut(s) 368, 580
BstFNI CGCG 2 cut(s) 61, 82
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 4 cut(s) 61, 82, 84, 129
BstKTI GATC 1 cut(s) 478
BstMAI GTCTC 3 cut(s) 139, 150, 183
BstMBI GATC 1 cut(s) 475
BstMWI GCNNNNNNNGC 3 cut(s) 386, 410, 565
BstSCI CCNGG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 201
BstUI CGCG 2 cut(s) 61, 82
BstV1I GCAGC 2 cut(s) 391, 577
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BstZ17I GTATAC 1 cut(s) 176
BsuRI GGCC 3 cut(s) 104, 108, 428
BtsCI GGATG 2 cut(s) 368, 580
BtsIMutI CAGTG 4 cut(s) 199, 436, 514, 516
Cac8I GCNNGC 3 cut(s) 82, 106, 557
CfoI GCGC 4 cut(s) 61, 82, 84, 129
Cfr10I RCCGGY 2 cut(s) 104, 270
Cfr13I GGNCC 3 cut(s) 70, 255, 426
CviAII CATG 2 cut(s) 85, 311
DdeI CTNAG 1 cut(s) 179
DpnI GATC 1 cut(s) 477
DpnII GATC 1 cut(s) 475
EaeI YGGCCR 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 2 cut(s) 70, 255
EcoO109I RGGNCCY 1 cut(s) 70
FaeI CATG 2 cut(s) 88, 314
FatI CATG 2 cut(s) 84, 310
FblI GTMKAC 2 cut(s) 175, 240
Fnu4HI GCNGC 2 cut(s) 405, 566
FokI GGATG 2 cut(s) 355, 567
FseI GGCCGGCC 1 cut(s) 108
Fsp4HI GCNGC 2 cut(s) 405, 566
GlaI GCGC 4 cut(s) 60, 81, 83, 128
GluI GCNGC 2 cut(s) 405, 566
GsuI CTGGAG 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 3 cut(s) 104, 108, 428
HapII CCGG 3 cut(s) 105, 130, 271
HhaI GCGC 4 cut(s) 61, 82, 84, 129
Hin1II CATG 2 cut(s) 88, 314
Hin6I GCGC 4 cut(s) 59, 80, 82, 127
HinP1I GCGC 4 cut(s) 59, 80, 82, 127
HincII GTYRAC 2 cut(s) 13, 241
HindII GTYRAC 2 cut(s) 13, 241
HpaII CCGG 3 cut(s) 105, 130, 271
Hpy166II GTNNAC 3 cut(s) 13, 176, 241
Hpy188I TCNGA 3 cut(s) 155, 252, 278
Hpy188III TCNNGA 4 cut(s) 169, 186, 372, 416
Hpy8I GTNNAC 3 cut(s) 13, 176, 241
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 4 cut(s) 61, 94, 569, 603
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 4 cut(s) 27, 407, 471, 559
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 410, 565
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 2 cut(s) 88, 314
HspAI GCGC 4 cut(s) 59, 80, 82, 127
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 1 cut(s) 475
LmnI GCTCC 1 cut(s) 457
Lsp1109I GCAGC 2 cut(s) 391, 577
LweI GCATC 4 cut(s) 292, 367, 377, 482
MaeIII GTNAC 1 cut(s) 547
MalI GATC 1 cut(s) 477
MboI GATC 1 cut(s) 475
MboII GAAGA 2 cut(s) 501, 524
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 4 cut(s) 22, 212, 445, 522
MnlI CCTC 3 cut(s) 83, 246, 357
MroNI GCCGGC 1 cut(s) 104
MspI CCGG 3 cut(s) 105, 130, 271
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 435
MvnI CGCG 2 cut(s) 61, 82
MwoI GCNNNNNNNGC 3 cut(s) 386, 410, 565
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 131
NdeII GATC 1 cut(s) 475
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 2 cut(s) 88, 314
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 547
PauI GCGCGC 1 cut(s) 80
PctI GAATGC 1 cut(s) 435
PdiI GCCGGC 1 cut(s) 106
PflFI GACNNNGTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 406, 567
PpuMI RGGWCCY 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 3 cut(s) 70, 255, 426
PspPPI RGGWCCY 1 cut(s) 70
PsrI GAACNNNNNNTAC 2 cut(s) 166, 198
PsuI RGATCY 1 cut(s) 475
PsyI GACNNNGTC 1 cut(s) 8
PteI GCGCGC 1 cut(s) 80
RigI GGCCGGCC 1 cut(s) 108
SalI GTCGAC 1 cut(s) 239
SatI GCNGC 2 cut(s) 405, 566
Sau3AI GATC 1 cut(s) 475
Sau96I GGNCC 3 cut(s) 70, 255, 426
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 201
SetI ASST 4 cut(s) 75, 257, 454, 614
SfaNI GCATC 4 cut(s) 292, 367, 377, 482
SinI GGWCC 2 cut(s) 70, 255
Sse9I AATT 4 cut(s) 22, 212, 445, 522
SsiI CCGC 2 cut(s) 258, 305
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 2 cut(s) 123, 240
TasI AATT 4 cut(s) 22, 212, 445, 522
TscAI CASTG 4 cut(s) 199, 436, 514, 523
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 2 cut(s) 404, 565
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 2 cut(s) 225, 299
TspRI CASTG 4 cut(s) 199, 436, 514, 523
Tth111I GACNNNGTC 1 cut(s) 8
VpaK11BI GGWCC 2 cut(s) 70, 255
XmiI GTMKAC 2 cut(s) 175, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.