Rh5AG245600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000625
Physical Location & Seq
Forward (+)
30332847 .. 30354038
21192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG245600.1

Sequence Viewer

Length: 351 bp
ATGGGAGAGGAGGAAGTATTGATCGTGGAGGGGGCCCTACATATCTTGCCATTCAATCCCAGCCGCCTGGCTCTGGAACTCTCTAAAGGCAGCAGTTCAGCTCGAATTGTGCAAAAGTTCAAGTTGTTGGAGTCATTTAAAATTGCTCTCGATAAAGGGAAGTTATGTTGTGAAATAGCTAGGATGCCTGTCACCTTTACGGGGGCTTCTTCTGTTGTGCTTATGTATAGCAGTGGTGACGATGAGAACAGCAAAAGCAGCAGGTGGAGGAGGATACATAAGGACCCGAAACAGCCCTTGAATACTAGAATCAATGACCTTATATCCCCAAGAATTTGGTCAGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.04

Weight (kDa)

8.64

Isoelectric Point (pI)

60.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 252
Acc36I ACCTGC 1 cut(s) 252
AciI CCGC 1 cut(s) 64
AcsI RAATTY 1 cut(s) 333
AfiI CCNNNNNNNGG 2 cut(s) 73, 201
AgsI TTSAA 3 cut(s) 55, 121, 301
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 2 cut(s) 101, 179
AluI AGCT 2 cut(s) 101, 179
AoxI GGCC 1 cut(s) 33
ApaI GGGCCC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 90, 258
ApoI RAATTY 1 cut(s) 333
AspS9I GGNCC 3 cut(s) 33, 34, 283
AsuHPI GGTGA 2 cut(s) 184, 248
AvaII GGWCC 1 cut(s) 283
BaeGI GKGCMC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 102, 270
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 267
BfaI CTAG 2 cut(s) 180, 306
BfuAI ACCTGC 1 cut(s) 252
BfuI GTATCC 1 cut(s) 267
BisI GCNGC 3 cut(s) 64, 91, 259
BlsI GCNGC 3 cut(s) 65, 92, 260
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 3 cut(s) 33, 34, 283
BmiI GGNNCC 3 cut(s) 34, 35, 285
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 174
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 201
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 73, 201
BseRI GAGGAG 2 cut(s) 23, 283
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 2 cut(s) 102, 270
BseYI CCCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 73, 201
BsnI GGCC 1 cut(s) 35
Bsp120I GGGCCC 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 1 cut(s) 64
BspANI GGCC 1 cut(s) 35
BspLI GGNNCC 3 cut(s) 34, 35, 285
BspMI ACCTGC 1 cut(s) 252
BssMI GATC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 189
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 102, 270
BstXI CCANNNNNNTGG 2 cut(s) 67, 336
BsuI GTATCC 1 cut(s) 267
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 189
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 238
BveI ACCTGC 1 cut(s) 252
Cfr13I GGNCC 3 cut(s) 33, 34, 283
CviJI RGCY 7 cut(s) 35, 63, 71, 101, 179, 206, 295
CviKI_1 RGCY 7 cut(s) 35, 63, 71, 101, 179, 206, 295
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
DraI TTTAAA 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 283
EcoO109I RGGNCCY 3 cut(s) 33, 34, 283
EcoRII CCWGG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 37
FaiI YATR 6 cut(s) 42, 166, 224, 228, 279, 323
Fnu4HI GCNGC 3 cut(s) 64, 91, 259
FokI GGATG 1 cut(s) 196
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 3 cut(s) 64, 91, 259
FspBI CTAG 2 cut(s) 180, 306
GluI GCNGC 3 cut(s) 64, 91, 259
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 35
HinfI GANTC 2 cut(s) 131, 309
HphI GGTGA 2 cut(s) 184, 248
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 2 cut(s) 74, 149
HpyCH4V TGCA 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 6 cut(s) 53, 59, 73, 80, 201, 247
Lsp1109I GCAGC 2 cut(s) 102, 270
LweI GCATC 1 cut(s) 174
MaeI CTAG 2 cut(s) 180, 306
MaeIII GTNAC 2 cut(s) 190, 236
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 3 cut(s) 105, 141, 333
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 4 cut(s) 4, 22, 261, 264
MseI TTAA 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeII GATC 1 cut(s) 21
NlaIV GGNNCC 3 cut(s) 34, 35, 285
NmuCI GTSAC 2 cut(s) 190, 236
PaqCI CACCTGC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 309
PkrI GCNGC 3 cut(s) 65, 92, 260
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PpuMI RGGWCCY 1 cut(s) 283
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 3 cut(s) 34, 35, 285
PspOMI GGGCCC 1 cut(s) 33
PspPI GGNCC 3 cut(s) 33, 34, 283
PspPPI RGGWCCY 1 cut(s) 283
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 3 cut(s) 64, 91, 259
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 3 cut(s) 33, 34, 283
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 1 cut(s) 37
SetI ASST 5 cut(s) 103, 181, 197, 266, 321
SfaNI GCATC 1 cut(s) 174
SinI GGWCC 1 cut(s) 283
Sse9I AATT 3 cut(s) 105, 141, 333
SsiI CCGC 1 cut(s) 64
SspMI CTAG 2 cut(s) 180, 306
StyD4I CCNGG 1 cut(s) 66
TaqI TCGA 2 cut(s) 103, 150
TasI AATT 3 cut(s) 105, 141, 333
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 2 cut(s) 190, 236
TseI GCWGC 2 cut(s) 90, 258
Tsp45I GTSAC 2 cut(s) 190, 236
TspRI CASTG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 1 cut(s) 333
XspI CTAG 2 cut(s) 180, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.