Rorug04G0020500

Lysosomal beta glucosidase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
3010805 .. 3012109
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0020500.1

Sequence Viewer

Length: 1305 bp
ATGGAAGGAATGGAGGATTTGTTGGTTAGTGATTTAATTGACCAAGAATCAATGTCTTGGGGTACAGACTTTATGCATGAACTTTTCACAGAGGGGGAAGTGGAGAAAATGGCAGCTATTCCCATTAGTTTTCGTGGGGCTGATGACCGCTTGATTTGGCATTATGACAAGAAGGGTTTGTATCAGGTTCGTAGTGGTTATCATGTGTATAATTTGGCTATGTCTAAGCAGCACATGGCGTCAACGTCGTCAGGGGATATTGGTGGCATAAATAGCAAGTATTGGGCTAAGGTTTGGGGGGCCCGTACTCCTCCAAAAGTGAAATGCTTTATATGGAGGCTCTTGAAGAATATTATTCCTACAAAGGAGGCACTCATGCAACGTAGAGTAGCTATGGTGGACCCCAAGTGCATGTTCTGCATGGCTGCAGTGGAAACCGGTACGCATCTATTTAAGTCTTGTTTAGCTTTACATTGTTTCTGGTTATTTGGCCCTCTGAAATTAAATGCTACTGCACACCCGGCCAATTGTGTCCGAGATTGGGTCTTAGATATGATTGATTCCCTGAGTGGGGATCAGCGGGATTTTTTCTTCATGGGTTTATGGGCCATCTGGAAAGAGAGGAATAAGCTTGTGTGGAATGATGATCACTTCCAGCCTATGCATATGATCCAGTGGGCTACTCAAATGCTTGAGGATTTTCAAAAGTACCACCCGAAAGCAGTTCGGAAGCAGCGACGACCTCTAACTAAGTGGCAAAATCCTCCAAGTGGTCGTCTGAAAATCAATGTTGATGGGGCATTTAGAGCTGAGGAAGGGAGTGGAGGTATTGGGGTAGTTGTCAGGAATGTTGCTGGTATGGGTATTGCTGCTTTGGCCAGGACTTTTCTACATGCACACTCGGTTCTTAATATGGAAGCGGAGGCGTGTAGGGCTGGCTTACTTCTTGGTATTCACCAAGGTTGGACTGACATAGATGTTGAAAGCGACTCTGCCATCCTGATTTCTGCTCTCAATAGTCGAGAGAAGAATTTCTCTGAGGTAAGTCGAGTTTTAGATGATTGTAGGGAGTATATTACTGCTTTTCAATCTGTTAGAATTCGACATATTTACCGTGAAGCAAATGGTGTAGCGGATAGGCTTGCTCACCTTGCTAGTAGTGGTTTCATTGATGATGTATGGTTAGATGAGACACCTGCAATCATTCAGGATGTTCTCTATGAGGATTATTGCAACTGTTCTACTGTAGCTCGGGGTTCAGGTTTTATGTCCCCCCCCCGATGCAAAATTCTACTATTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

434

Amino Acids

49.3

Weight (kDa)

6.73

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 91 - 161 2.4e-15 zinc-binding in reverse transcriptase
RVT_3 PF13456 263 - 384 3.3e-26 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1204
Acc36I ACCTGC 1 cut(s) 1204
AciI CCGC 4 cut(s) 148, 580, 920, 1133
AclWI GGATC 2 cut(s) 582, 664
AcoI YGGCCR 2 cut(s) 522, 876
AcsI RAATTY 3 cut(s) 1030, 1098, 1287
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 4 cut(s) 64, 307, 442, 710
AfiI CCNNNNNNNGG 4 cut(s) 541, 570, 571, 770
AgeI ACCGGT 1 cut(s) 437
AgsI TTSAA 4 cut(s) 346, 704, 983, 1088
AjnI CCWGG 1 cut(s) 878
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 6 cut(s) 116, 392, 467, 631, 809, 1250
AluI AGCT 6 cut(s) 116, 392, 467, 631, 809, 1250
Alw26I GTCTC 1 cut(s) 1184
AlwI GGATC 2 cut(s) 582, 664
Ama87I CYCGRG 1 cut(s) 1251
AoxI GGCC 5 cut(s) 300, 490, 522, 606, 876
ApaI GGGCCC 1 cut(s) 304
ApeKI GCWGC 5 cut(s) 113, 229, 425, 733, 869
ApoI RAATTY 3 cut(s) 1030, 1098, 1287
AseI ATTAAT 1 cut(s) 1298
AsiGI ACCGGT 1 cut(s) 437
Asp700I GAANNNNTTC 1 cut(s) 1031
AspS9I GGNCC 5 cut(s) 300, 301, 400, 491, 606
AsuC2I CCSGG 1 cut(s) 521
AsuHPI GGTGA 2 cut(s) 947, 1139
AvaI CYCGRG 1 cut(s) 1251
AvaII GGWCC 1 cut(s) 400
BaeGI GKGCMC 1 cut(s) 304
BalI TGGCCA 1 cut(s) 878
BanII GRGCYC 1 cut(s) 304
BbvCI CCTCAGC 1 cut(s) 810
BbvI GCAGC 5 cut(s) 125, 241, 412, 745, 856
BccI CCATC 3 cut(s) 617, 788, 1004
BciT130I CCWGG 1 cut(s) 880
BclI TGATCA 1 cut(s) 646
BcnI CCSGG 1 cut(s) 521
BcoDI GTCTC 1 cut(s) 1184
BfaI CTAG 1 cut(s) 1155
BfmI CTRYAG 2 cut(s) 426, 1245
BfuAI ACCTGC 1 cut(s) 1204
BisI GCNGC 5 cut(s) 114, 230, 426, 734, 870
BlsI GCNGC 5 cut(s) 115, 231, 427, 735, 871
Bme1390I CCNGG 2 cut(s) 521, 880
Bme18I GGWCC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 1251
BmgT120I GGNCC 5 cut(s) 300, 301, 400, 491, 606
BmiI GGNNCC 3 cut(s) 301, 302, 402
BmrFI CCNGG 2 cut(s) 521, 880
BmsI GCATC 2 cut(s) 454, 1271
Bpu10I CCTNAGC 2 cut(s) 288, 810
BpuEI CTTGAG 1 cut(s) 713
BpuMI CCSGG 1 cut(s) 521
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 958
BsaWI WCCGGW 1 cut(s) 437
BsaXI ACNNNNNCTCC 4 cut(s) 5, 35, 811, 841
Bsc4I CCNNNNNNNGG 4 cut(s) 541, 570, 571, 770
Bse118I RCCGGY 1 cut(s) 437
Bse1I ACTGG 1 cut(s) 673
BseBI CCWGG 1 cut(s) 880
BseDI CCNNGG 1 cut(s) 958
BseGI GGATG 2 cut(s) 996, 1216
BseLI CCNNNNNNNGG 4 cut(s) 541, 570, 571, 770
BseMII CTCAG 3 cut(s) 557, 801, 1029
BseNI ACTGG 1 cut(s) 673
BseRI GAGGAG 1 cut(s) 300
BseSI GKGCMC 1 cut(s) 304
BseXI GCAGC 5 cut(s) 125, 241, 412, 745, 856
BsgI GTGCAG 1 cut(s) 498
BshFI GGCC 5 cut(s) 302, 492, 524, 608, 878
BshTI ACCGGT 1 cut(s) 437
BsiHKCI CYCGRG 1 cut(s) 1251
BsiSI CCGG 2 cut(s) 438, 521
BslFI GGGAC 1 cut(s) 1255
BslI CCNNNNNNNGG 4 cut(s) 541, 570, 571, 770
BsmAI GTCTC 1 cut(s) 1184
BsmFI GGGAC 1 cut(s) 1255
BsnI GGCC 5 cut(s) 302, 492, 524, 608, 878
BsoBI CYCGRG 1 cut(s) 1251
Bsp120I GGGCCC 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 3 cut(s) 574, 646, 669
BspACI CCGC 4 cut(s) 148, 580, 920, 1133
BspANI GGCC 5 cut(s) 302, 492, 524, 608, 878
BspCNI CTCAG 3 cut(s) 558, 802, 1030
BspLI GGNNCC 3 cut(s) 301, 302, 402
BspMAI CTGCAG 1 cut(s) 430
BspMI ACCTGC 1 cut(s) 1204
BspPI GGATC 2 cut(s) 582, 664
BsrFI RCCGGY 1 cut(s) 437
BsrI ACTGG 1 cut(s) 673
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 958
BssMI GATC 3 cut(s) 574, 646, 669
BssNI GRCGYC 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 958
Bst2UI CCWGG 1 cut(s) 880
Bst4CI ACNGT 3 cut(s) 1115, 1238, 1246
BstACI GRCGYC 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 417
BstC8I GCNNGC 2 cut(s) 937, 1143
BstDEI CTNAG 7 cut(s) 225, 288, 547, 566, 750, 810, 1038
BstF5I GGATG 2 cut(s) 996, 1216
BstKTI GATC 3 cut(s) 577, 649, 672
BstMAI GTCTC 1 cut(s) 1184
BstMBI GATC 3 cut(s) 574, 646, 669
BstMWI GCNNNNNNNGC 7 cut(s) 273, 417, 521, 806, 875, 932, 1151
BstNI CCWGG 1 cut(s) 880
BstNSI RCATGY 2 cut(s) 415, 896
BstSCI CCNGG 2 cut(s) 519, 878
BstSFI CTRYAG 2 cut(s) 426, 1245
BstSLI GKGCMC 1 cut(s) 304
BstV1I GCAGC 5 cut(s) 125, 241, 412, 745, 856
BsuRI GGCC 5 cut(s) 302, 492, 524, 608, 878
BtsCI GGATG 2 cut(s) 996, 1216
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 2 cut(s) 435, 680
BveI ACCTGC 1 cut(s) 1204
Cac8I GCNNGC 2 cut(s) 937, 1143
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 5 cut(s) 300, 301, 400, 491, 606
CseI GACGC 1 cut(s) 228
Csp6I GTAC 4 cut(s) 63, 306, 441, 709
CspAI ACCGGT 1 cut(s) 437
CviAII CATG 8 cut(s) 77, 203, 235, 376, 412, 421, 595, 893
CviQI GTAC 4 cut(s) 63, 306, 441, 709
DdeI CTNAG 7 cut(s) 225, 288, 547, 566, 750, 810, 1038
DpnI GATC 3 cut(s) 576, 648, 671
DpnII GATC 3 cut(s) 574, 646, 669
EaeI YGGCCR 2 cut(s) 522, 876
Eco130I CCWWGG 1 cut(s) 958
Eco24I GRGCYC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 400
Eco88I CYCGRG 1 cut(s) 1251
EcoO109I RGGNCCY 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 1098
EcoRII CCWGG 1 cut(s) 878
EcoT14I CCWWGG 1 cut(s) 958
EcoT22I ATGCAT 2 cut(s) 78, 666
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 958
FaeI CATG 8 cut(s) 80, 206, 238, 379, 415, 424, 598, 896
FaqI GGGAC 1 cut(s) 1255
FatI CATG 8 cut(s) 76, 202, 234, 375, 411, 420, 594, 892
FauI CCCGC 1 cut(s) 573
FauNDI CATATG 1 cut(s) 666
FbaI TGATCA 1 cut(s) 646
Fnu4HI GCNGC 5 cut(s) 114, 230, 426, 734, 870
FokI GGATG 2 cut(s) 983, 1223
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 5 cut(s) 114, 230, 426, 734, 870
FspBI CTAG 1 cut(s) 1155
GluI GCNGC 5 cut(s) 114, 230, 426, 734, 870
HaeIII GGCC 5 cut(s) 302, 492, 524, 608, 878
HapII CCGG 2 cut(s) 438, 521
HgaI GACGC 1 cut(s) 228
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 8 cut(s) 80, 206, 238, 379, 415, 424, 598, 896
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 3 cut(s) 47, 560, 989
HpaII CCGG 2 cut(s) 438, 521
HphI GGTGA 2 cut(s) 947, 1139
Hpy166II GTNNAC 2 cut(s) 243, 400
Hpy188I TCNGA 5 cut(s) 498, 536, 729, 780, 1039
Hpy188III TCNNGA 6 cut(s) 343, 613, 844, 1000, 1022, 1208
Hpy8I GTNNAC 2 cut(s) 243, 400
Hpy99I CGWCG 2 cut(s) 250, 741
HpyAV CCTTC 2 cut(s) 166, 809
HpyCH4III ACNGT 3 cut(s) 1115, 1238, 1246
HpyCH4IV ACGT 2 cut(s) 245, 382
HpyF10VI GCNNNNNNNGC 7 cut(s) 273, 417, 521, 806, 875, 932, 1151
HpyF3I CTNAG 7 cut(s) 225, 288, 547, 566, 750, 810, 1038
HpySE526I ACGT 2 cut(s) 245, 382
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 8 cut(s) 80, 206, 238, 379, 415, 424, 598, 896
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 3 cut(s) 574, 646, 669
Lsp1109I GCAGC 5 cut(s) 125, 241, 412, 745, 856
LweI GCATC 2 cut(s) 454, 1271
MaeI CTAG 1 cut(s) 1155
MaeII ACGT 2 cut(s) 245, 382
MalI GATC 3 cut(s) 576, 648, 671
MboI GATC 3 cut(s) 574, 646, 669
MboII GAAGA 3 cut(s) 358, 583, 1039
MfeI CAATTG 1 cut(s) 526
MhlI GDGCHC 1 cut(s) 304
MlsI TGGCCA 1 cut(s) 878
MluCI AATT 8 cut(s) 36, 211, 500, 526, 1030, 1098, 1287, 1299
MluNI TGGCCA 1 cut(s) 878
MlyI GAGTC 1 cut(s) 983
MmeI TCCRAC 1 cut(s) 944
Mox20I TGGCCA 1 cut(s) 878
Mph1103I ATGCAT 2 cut(s) 78, 666
MroXI GAANNNNTTC 1 cut(s) 1031
MscI TGGCCA 1 cut(s) 878
MseI TTAA 6 cut(s) 35, 453, 503, 909, 1298, 1303
Msp20I TGGCCA 1 cut(s) 878
MspA1I CMGCKG 1 cut(s) 580
MspI CCGG 2 cut(s) 438, 521
MspR9I CCNGG 2 cut(s) 521, 880
MunI CAATTG 1 cut(s) 526
MvaI CCWGG 1 cut(s) 880
MwoI GCNNNNNNNGC 7 cut(s) 273, 417, 521, 806, 875, 932, 1151
NciI CCSGG 1 cut(s) 521
NdeI CATATG 1 cut(s) 666
NdeII GATC 3 cut(s) 574, 646, 669
NlaIII CATG 8 cut(s) 80, 206, 238, 379, 415, 424, 598, 896
NlaIV GGNNCC 3 cut(s) 301, 302, 402
NsiI ATGCAT 2 cut(s) 78, 666
NspI RCATGY 2 cut(s) 415, 896
PaqCI CACCTGC 1 cut(s) 1204
PcsI WCGNNNNNNNCGW 1 cut(s) 733
PdmI GAANNNNTTC 1 cut(s) 1031
PfeI GAWTC 2 cut(s) 47, 560
PinAI ACCGGT 1 cut(s) 437
PkrI GCNGC 5 cut(s) 115, 231, 427, 735, 871
PleI GAGTC 1 cut(s) 983
PpsI GAGTC 1 cut(s) 983
PshBI ATTAAT 1 cut(s) 1298
Psp6I CCWGG 1 cut(s) 878
PspGI CCWGG 1 cut(s) 878
PspN4I GGNNCC 3 cut(s) 301, 302, 402
PspOMI GGGCCC 1 cut(s) 300
PspPI GGNCC 5 cut(s) 300, 301, 400, 491, 606
PstI CTGCAG 1 cut(s) 430
RsaI GTAC 4 cut(s) 64, 307, 442, 710
RsaNI GTAC 4 cut(s) 63, 306, 441, 709
SaqAI TTAA 6 cut(s) 35, 453, 503, 909, 1298, 1303
SatI GCNGC 5 cut(s) 114, 230, 426, 734, 870
Sau3AI GATC 3 cut(s) 574, 646, 669
Sau96I GGNCC 5 cut(s) 300, 301, 400, 491, 606
SchI GAGTC 1 cut(s) 983
ScrFI CCNGG 2 cut(s) 521, 880
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 2 cut(s) 454, 1271
SfcI CTRYAG 2 cut(s) 426, 1245
SinI GGWCC 1 cut(s) 400
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 8 cut(s) 36, 211, 500, 526, 1030, 1098, 1287, 1299
SsiI CCGC 4 cut(s) 148, 580, 920, 1133
SspI AATATT 1 cut(s) 352
SspMI CTAG 1 cut(s) 1155
StyD4I CCNGG 2 cut(s) 519, 878
StyI CCWWGG 1 cut(s) 958
TaaI ACNGT 3 cut(s) 1115, 1238, 1246
TaiI ACGT 2 cut(s) 248, 385
TaqI TCGA 3 cut(s) 1021, 1048, 1102
TasI AATT 8 cut(s) 36, 211, 500, 526, 1030, 1098, 1287, 1299
TfiI GAWTC 2 cut(s) 47, 560
Tru1I TTAA 6 cut(s) 35, 453, 503, 909, 1298, 1303
Tru9I TTAA 6 cut(s) 35, 453, 503, 909, 1298, 1303
TscAI CASTG 2 cut(s) 435, 680
TseI GCWGC 5 cut(s) 113, 229, 425, 733, 869
TspDTI ATGAA 3 cut(s) 93, 583, 1156
TspRI CASTG 2 cut(s) 435, 680
VpaK11BI GGWCC 1 cut(s) 400
VspI ATTAAT 1 cut(s) 1298
XapI RAATTY 3 cut(s) 1030, 1098, 1287
XceI RCATGY 2 cut(s) 415, 896
XmnI GAANNNNTTC 1 cut(s) 1031
XspI CTAG 1 cut(s) 1155
Zsp2I ATGCAT 2 cut(s) 78, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.