Rh6BG185500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000625
Physical Location & Seq
Reverse (-)
34001483 .. 34007684
6202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG185500.1

Sequence Viewer

Length: 234 bp
ATGGCTGAGGATGCCTTATCTATTTGGGAACTCTTTAAAGGCAGCAGTTCAGCTCGAATTGTGCAAAAGTTCAAGTTGTTGGAGTCATTTAAAATTGCTCTCGATAAAGGGAAGTTATGTTGTATGCTGATGAAAAAAGTTGATGCATTGATGAAAGCCGTGGAGCAGTCTATGAAAATAAATAGAGAAGCCGTAGCTAAGGCAAAGTTTGCTCAAGATTTGGAACAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.7

Weight (kDa)

8.98

Isoelectric Point (pI)

22.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 73
AluBI AGCT 2 cut(s) 53, 197
AluI AGCT 2 cut(s) 53, 197
ApeKI GCWGC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 1 cut(s) 54
BceAI ACGGC 2 cut(s) 143, 176
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
BmsI GCATC 1 cut(s) 133
Bpu10I CCTNAGC 2 cut(s) 6, 198
BpuEI CTTGAG 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 16
BseXI GCAGC 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 209
BstDEI CTNAG 2 cut(s) 6, 198
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 11, 209
BstV1I GCAGC 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 16
CviJI RGCY 5 cut(s) 5, 53, 158, 191, 197
CviKI_1 RGCY 5 cut(s) 5, 53, 158, 191, 197
DdeI CTNAG 2 cut(s) 6, 198
DraI TTTAAA 2 cut(s) 37, 91
EcoT22I ATGCAT 1 cut(s) 148
FaiI YATR 3 cut(s) 118, 125, 173
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 43
HinfI GANTC 1 cut(s) 83
Hpy188III TCNNGA 2 cut(s) 101, 215
HpyCH4V TGCA 2 cut(s) 64, 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 209
HpyF3I CTNAG 2 cut(s) 6, 198
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 1 cut(s) 212
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 133
MluCI AATT 2 cut(s) 57, 93
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 60
Mph1103I ATGCAT 1 cut(s) 148
MseI TTAA 2 cut(s) 36, 90
MwoI GCNNNNNNNGC 2 cut(s) 11, 209
NsiI ATGCAT 1 cut(s) 148
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 36, 90
SatI GCNGC 1 cut(s) 43
SchI GAGTC 1 cut(s) 92
SetI ASST 2 cut(s) 55, 199
SfaNI GCATC 1 cut(s) 133
SgeI CNNG 5 cut(s) 66, 85, 113, 172, 227
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
Sse9I AATT 2 cut(s) 57, 93
TaqI TCGA 2 cut(s) 55, 102
TasI AATT 2 cut(s) 57, 93
Tru1I TTAA 2 cut(s) 36, 90
Tru9I TTAA 2 cut(s) 36, 90
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 3 cut(s) 146, 167, 188
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.