Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

123876 .. 126031

Gene Structure 2156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g00200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGACTGAGATCATACCTGGATTACAAGGGGAGTTACCAGCTAACTCTAGAAAGGGCATTCCTTTCGTAGGTGGAAATAAAAAGGTTGCAGCGTGTGCAAAGCATTATGTCGGTGATGGAGGAACAACCAAGGGCATCAATGAGAATAACACTGTGATAAACAGACACGGCTTGCTCAGTATCCACATGCCAGGCTACTATGACTCAATTATCAAAGGGGTTGCAACTATTATGGTCATGGTTCCATACAACTATACGGAATTTATTGACGGACTAACCTCCCTGGTGAAAAATGGAATCATTCCCATGAGCAGAATTGATGATGCTGTAAAGAGAATTTTGCGGGTTAAGTTCGTCATGGGCTTATTTGAGGAACCGTTGGCTGATCGCAGCCTGGTCGACCAACTTGGCAGTAAGGAACACAGAGAATTAGCTAGGGAAGCTGTGAGGAGATCTCTAGTGCTTCTAAAGAACGAAAAATCTGCTGATGAACCGTTGCTACCCCTTCCGAAGAAGGCATCAAAAATACTTGTAGCTGGTAGTCATGCAGATAACCTTGGTTATCAGTGTGGTGGGTGGACCATTGAGTGGCAGGGCTTAAGTGGCAACAATCTCACCGAAGGTACCACAATTCTTAGTGCCATAAAGAACACAGTGGATCCTAAAACCAAAGTCGTGTACAAGGAGAATCCTGATGCTGACTTTGTGAAGTCGAATGATTTCTCATATGCCGTCGTTGTGGTAGGGGAACACCCGTATGTAGAGACATTTGGTGACAGCCTAAACTTGACAATACCTGATCCTGGCCCGAGCACCATCACAAATGTTTGCGGTTCTGTGAAATGTGTTGTTATCGTCATCTCTGGCCGTCCTGTTGTGATCCAACCATATGTTCCCTTGATGGATGCTCTTGTTGCAGCTTGGCTTCCAGGAACGGAAGGGCAGGGCGTAGCTGATGTTTTGTTTGGTGACCATGGCTTCACGGGCAAGCTTTCTCGAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

335

Amino Acids

36.03

Weight (kDa)

6.66

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3_C	PF01915	153 - 334	2.1e-31	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	623
AccB1I	GGYRCC	1 cut(s)	623
AccB7I	CCANNNNNTGG	1 cut(s)	588
AccI	GTMKAC	1 cut(s)	399
AciI	CCGC	2 cut(s)	343, 831
AclWI	GGATC	4 cut(s)	653, 666, 794, 874
AcoI	YGGCCR	1 cut(s)	865
AcsI	RAATTY	2 cut(s)	260, 336
AfaI	GTAC	2 cut(s)	625, 680
AfiI	CCNNNNNNNGG	3 cut(s)	68, 588, 803
AflII	CTTAAG	1 cut(s)	598
AjnI	CCWGG	6 cut(s)	16, 190, 282, 393, 802, 928
AjuI	GAANNNNNNNTTGG	2 cut(s)	876, 908
AluBI	AGCT	7 cut(s)	41, 434, 443, 536, 920, 953, 991
AluI	AGCT	7 cut(s)	41, 434, 443, 536, 920, 953, 991
Alw21I	GWGCWC	1 cut(s)	815
Alw26I	GTCTC	1 cut(s)	758
AlwI	GGATC	4 cut(s)	653, 666, 794, 874
Ama87I	CYCGRG	1 cut(s)	808
AoxI	GGCC	2 cut(s)	805, 865
ApeKI	GCWGC	3 cut(s)	89, 390, 917
ApoI	RAATTY	2 cut(s)	260, 336
Asp700I	GAANNNNTTC	1 cut(s)	719
Asp718I	GGTACC	1 cut(s)	623
AspS9I	GGNCC	2 cut(s)	579, 806
AsuHPI	GGTGA	5 cut(s)	125, 298, 607, 785, 980
AvaI	CYCGRG	1 cut(s)	808
AvaII	GGWCC	1 cut(s)	579
BamHI	GGATCC	1 cut(s)	658
BanI	GGYRCC	1 cut(s)	623
Bbv12I	GWGCWC	1 cut(s)	815
BbvI	GCAGC	3 cut(s)	101, 402, 929
BccI	CCATC	3 cut(s)	110, 824, 895
BceAI	ACGGC	3 cut(s)	184, 716, 852
BcgI	CGANNNNNNTGC	6 cut(s)	46, 80, 379, 413, 464, 498
BciT130I	CCWGG	6 cut(s)	18, 192, 284, 395, 804, 930
BciVI	GTATCC	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	758
BfaI	CTAG	3 cut(s)	48, 435, 458
BfrI	CTTAAG	1 cut(s)	598
BfuI	GTATCC	1 cut(s)	191
BglII	AGATCT	1 cut(s)	452
BisI	GCNGC	3 cut(s)	90, 391, 918
BlsI	GCNGC	3 cut(s)	91, 392, 919
Bme1390I	CCNGG	6 cut(s)	18, 192, 284, 395, 804, 930
Bme18I	GGWCC	1 cut(s)	579
BmeT110I	CYCGRG	1 cut(s)	808
BmgT120I	GGNCC	2 cut(s)	579, 806
BmiI	GGNNCC	4 cut(s)	243, 375, 625, 660
BmrFI	CCNGG	6 cut(s)	18, 192, 284, 395, 804, 930
BmsI	GCATC	5 cut(s)	144, 313, 527, 685, 895
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BsaJI	CCNNGG	4 cut(s)	129, 282, 556, 973
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 588, 803
BseBI	CCWGG	6 cut(s)	18, 192, 284, 395, 804, 930
BseDI	CCNNGG	4 cut(s)	129, 282, 556, 973
BseGI	GGATG	1 cut(s)	910
BseLI	CCNNNNNNNGG	3 cut(s)	68, 588, 803
BseMII	CTCAG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	463
BseXI	GCAGC	3 cut(s)	101, 402, 929
BshFI	GGCC	2 cut(s)	807, 867
BshNI	GGYRCC	1 cut(s)	623
BsiHKAI	GWGCWC	1 cut(s)	815
BsiHKCI	CYCGRG	1 cut(s)	808
BslI	CCNNNNNNNGG	3 cut(s)	68, 588, 803
BsmAI	GTCTC	1 cut(s)	758
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	807, 867
BsoBI	CYCGRG	1 cut(s)	808
Bsp1286I	GDGCHC	1 cut(s)	815
Bsp1407I	TGTACA	1 cut(s)	678
Bsp143I	GATC	6 cut(s)	9, 385, 452, 658, 799, 879
Bsp19I	CCATGG	1 cut(s)	973
BspACI	CCGC	2 cut(s)	343, 831
BspANI	GGCC	2 cut(s)	807, 867
BspCNI	CTCAG	1 cut(s)	189
BspLI	GGNNCC	4 cut(s)	243, 375, 625, 660
BspPI	GGATC	4 cut(s)	653, 666, 794, 874
BspT107I	GGYRCC	1 cut(s)	623
BspTI	CTTAAG	1 cut(s)	598
BsrGI	TGTACA	1 cut(s)	678
BssECI	CCNNGG	4 cut(s)	129, 282, 556, 973
BssMI	GATC	6 cut(s)	9, 385, 452, 658, 799, 879
BssT1I	CCWWGG	3 cut(s)	129, 556, 973
Bst2UI	CCWGG	6 cut(s)	18, 192, 284, 395, 804, 930
Bst4CI	ACNGT	4 cut(s)	154, 378, 495, 655
BstAFI	CTTAAG	1 cut(s)	598
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	678
BstC8I	GCNNGC	2 cut(s)	173, 989
BstDEI	CTNAG	3 cut(s)	6, 176, 635
BstDSI	CCRYGG	1 cut(s)	973
BstEII	GGTNACC	1 cut(s)	968
BstENI	CCTNNNNNAGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	910
BstKTI	GATC	6 cut(s)	12, 388, 455, 661, 802, 882
BstMAI	GTCTC	1 cut(s)	758
BstMBI	GATC	6 cut(s)	9, 385, 452, 658, 799, 879
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 440, 603, 914, 984
BstNI	CCWGG	6 cut(s)	18, 192, 284, 395, 804, 930
BstNSI	RCATGY	1 cut(s)	190
BstPI	GGTNACC	1 cut(s)	968
BstSCI	CCNGG	6 cut(s)	16, 190, 282, 393, 802, 928
BstV1I	GCAGC	3 cut(s)	101, 402, 929
BstX2I	RGATCY	2 cut(s)	452, 658
BstYI	RGATCY	2 cut(s)	452, 658
BsuI	GTATCC	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	807, 867
BtgI	CCRYGG	1 cut(s)	973
BtsCI	GGATG	1 cut(s)	910
BtsIMutI	CAGTG	3 cut(s)	150, 572, 660
Cac8I	GCNNGC	2 cut(s)	173, 989
Cfr13I	GGNCC	2 cut(s)	579, 806
Csp6I	GTAC	2 cut(s)	624, 679
CviAII	CATG	6 cut(s)	187, 238, 307, 358, 545, 974
CviQI	GTAC	2 cut(s)	624, 679
DdeI	CTNAG	3 cut(s)	6, 176, 635
DpnI	GATC	6 cut(s)	11, 387, 454, 660, 801, 881
DpnII	GATC	6 cut(s)	9, 385, 452, 658, 799, 879
EaeI	YGGCCR	1 cut(s)	865
Eco130I	CCWWGG	3 cut(s)	129, 556, 973
Eco47I	GGWCC	1 cut(s)	579
Eco88I	CYCGRG	1 cut(s)	808
Eco91I	GGTNACC	1 cut(s)	968
EcoNI	CCTNNNNNAGG	1 cut(s)	66
EcoO65I	GGTNACC	1 cut(s)	968
EcoRII	CCWGG	6 cut(s)	16, 190, 282, 393, 802, 928
EcoT14I	CCWWGG	3 cut(s)	129, 556, 973
ErhI	CCWWGG	3 cut(s)	129, 556, 973
FaeI	CATG	6 cut(s)	190, 241, 310, 361, 548, 977
FatI	CATG	6 cut(s)	186, 237, 306, 357, 544, 973
FauI	CCCGC	1 cut(s)	336
FauNDI	CATATG	2 cut(s)	727, 889
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	3 cut(s)	90, 391, 918
FokI	GGATG	1 cut(s)	917
Fsp4HI	GCNGC	3 cut(s)	90, 391, 918
FspBI	CTAG	3 cut(s)	48, 435, 458
GluI	GCNGC	3 cut(s)	90, 391, 918
HaeIII	GGCC	2 cut(s)	807, 867
Hin1II	CATG	6 cut(s)	190, 241, 310, 361, 548, 977
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	989
HinfI	GANTC	3 cut(s)	203, 297, 688
HphI	GGTGA	5 cut(s)	125, 298, 607, 785, 980
Hpy166II	GTNNAC	3 cut(s)	400, 579, 679
Hpy188I	TCNGA	1 cut(s)	510
Hpy188III	TCNNGA	3 cut(s)	48, 692, 996
Hpy8I	GTNNAC	3 cut(s)	400, 579, 679
Hpy99I	CGWCG	1 cut(s)	737
HpyAV	CCTTC	4 cut(s)	508, 515, 614, 932
HpyCH4III	ACNGT	4 cut(s)	154, 378, 495, 655
HpyCH4V	TGCA	5 cut(s)	89, 98, 224, 548, 917
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 440, 603, 914, 984
HpyF3I	CTNAG	3 cut(s)	6, 176, 635
Hsp92II	CATG	6 cut(s)	190, 241, 310, 361, 548, 977
KpnI	GGTACC	1 cut(s)	627
Kzo9I	GATC	6 cut(s)	9, 385, 452, 658, 799, 879
Lsp1109I	GCAGC	3 cut(s)	101, 402, 929
LweI	GCATC	5 cut(s)	144, 313, 527, 685, 895
MaeI	CTAG	3 cut(s)	48, 435, 458
MaeIII	GTNAC	3 cut(s)	33, 773, 968
MalI	GATC	6 cut(s)	11, 387, 454, 660, 801, 881
MboI	GATC	6 cut(s)	9, 385, 452, 658, 799, 879
MboII	GAAGA	1 cut(s)	523
MflI	RGATCY	2 cut(s)	452, 658
MhlI	GDGCHC	1 cut(s)	815
MluCI	AATT	6 cut(s)	207, 260, 315, 336, 428, 630
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	907
MnlI	CCTC	4 cut(s)	113, 289, 364, 441
MroXI	GAANNNNTTC	1 cut(s)	719
MseI	TTAA	2 cut(s)	348, 599
MslI	CAYNNNNRTG	2 cut(s)	305, 756
MspCI	CTTAAG	1 cut(s)	598
MspR9I	CCNGG	6 cut(s)	18, 192, 284, 395, 804, 930
Mva1269I	GAATGC	1 cut(s)	57
MvaI	CCWGG	6 cut(s)	18, 192, 284, 395, 804, 930
MwoI	GCNNNNNNNGC	5 cut(s)	95, 440, 603, 914, 984
NcoI	CCATGG	1 cut(s)	973
NdeI	CATATG	2 cut(s)	727, 889
NdeII	GATC	6 cut(s)	9, 385, 452, 658, 799, 879
NlaIII	CATG	6 cut(s)	190, 241, 310, 361, 548, 977
NlaIV	GGNNCC	4 cut(s)	243, 375, 625, 660
NmuCI	GTSAC	2 cut(s)	773, 968
NspI	RCATGY	1 cut(s)	190
PctI	GAATGC	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	719
PfeI	GAWTC	2 cut(s)	297, 688
PflMI	CCANNNNNTGG	1 cut(s)	588
PfoI	TCCNGGA	1 cut(s)	928
PkrI	GCNGC	3 cut(s)	91, 392, 919
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Psp6I	CCWGG	6 cut(s)	16, 190, 282, 393, 802, 928
PspEI	GGTNACC	1 cut(s)	968
PspGI	CCWGG	6 cut(s)	16, 190, 282, 393, 802, 928
PspN4I	GGNNCC	4 cut(s)	243, 375, 625, 660
PspPI	GGNCC	2 cut(s)	579, 806
PsrI	GAACNNNNNNTAC	2 cut(s)	483, 515
PsuI	RGATCY	2 cut(s)	452, 658
RsaI	GTAC	2 cut(s)	625, 680
RsaNI	GTAC	2 cut(s)	624, 679
RseI	CAYNNNNRTG	2 cut(s)	305, 756
SalI	GTCGAC	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	348, 599
SatI	GCNGC	3 cut(s)	90, 391, 918
Sau3AI	GATC	6 cut(s)	9, 385, 452, 658, 799, 879
Sau96I	GGNCC	2 cut(s)	579, 806
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	6 cut(s)	18, 192, 284, 395, 804, 930
SduI	GDGCHC	1 cut(s)	815
SfaNI	GCATC	5 cut(s)	144, 313, 527, 685, 895
SinI	GGWCC	1 cut(s)	579
SmiMI	CAYNNNNRTG	2 cut(s)	305, 756
SmlI	CTYRAG	1 cut(s)	598
SmoI	CTYRAG	1 cut(s)	598
Sse9I	AATT	6 cut(s)	207, 260, 315, 336, 428, 630
SsiI	CCGC	2 cut(s)	343, 831
SspMI	CTAG	3 cut(s)	48, 435, 458
StyD4I	CCNGG	6 cut(s)	16, 190, 282, 393, 802, 928
StyI	CCWWGG	3 cut(s)	129, 556, 973
TaaI	ACNGT	4 cut(s)	154, 378, 495, 655
TaqI	TCGA	3 cut(s)	399, 713, 997
TasI	AATT	6 cut(s)	207, 260, 315, 336, 428, 630
TatI	WGTACW	1 cut(s)	678
TfiI	GAWTC	2 cut(s)	297, 688
Tru1I	TTAA	2 cut(s)	348, 599
Tru9I	TTAA	2 cut(s)	348, 599
TscAI	CASTG	3 cut(s)	157, 572, 660
TseFI	GTSAC	2 cut(s)	773, 968
TseI	GCWGC	3 cut(s)	89, 390, 917
Tsp45I	GTSAC	2 cut(s)	773, 968
TspDTI	ATGAA	1 cut(s)	504
TspGWI	ACGGA	3 cut(s)	272, 285, 950
TspRI	CASTG	3 cut(s)	157, 572, 660
Van91I	CCANNNNNTGG	1 cut(s)	588
Vha464I	CTTAAG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	579
XagI	CCTNNNNNAGG	1 cut(s)	66
XapI	RAATTY	2 cut(s)	260, 336
XbaI	TCTAGA	1 cut(s)	47
XceI	RCATGY	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	719
XspI	CTAG	3 cut(s)	48, 435, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.