Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Forward (+)

959504 .. 960575

Gene Structure 1072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G007700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCCAGACTTCCCGTCTTCTTGGCGGGGCTTCTTCTCTTATGTTTCTGCAGCATAGCGATAGCAGAAGCAGAATACATTAAATATAAGGACCCCAAACAACCATTAAATACTAGAATCAAGGATCACTTTGGAGGAAAAGATTGGCCAAATGGGAGTATATTAAGTGGGGTTGTGAATGTTAGAGTACAAAAGGGTTCTGCAGAAACTTGGGTTAAACTGGTGAATGATTTTCAAAAGGCTTCTTTATCAACTCGGCTTGGAATTCCATTGATTTATGGTATTGATGCTGTTCATGGCCACAACAGTGTCTACAAGGCAACAATCTTTCCCCACAATGTTGGCCTTGGAGCTACCAGGCAAGTTTGCAGAGATCCAAGATGGGGTCGATGTTATGAAAGCAACAGTGAAGATCCCAAGCTTGTTCAAGCAATGACTGAGATCATTCCTGGCTTGCAAGGGGAGATACCGGCTAACTCTACAAAGGGCGTTCCCTTCGTAGCAGGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

171

Amino Acids

18.6

Weight (kDa)

9.23

Isoelectric Point (pI)

23.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	312
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	3 cut(s)	132, 368, 407
AcoI	YGGCCR	3 cut(s)	3, 146, 298
AcsI	RAATTY	1 cut(s)	264
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	236, 428
AhdI	GACNNNNNGTC	1 cut(s)	14
AjnI	CCWGG	2 cut(s)	356, 448
AleI	CACNNNNGTG	1 cut(s)	306
AluBI	AGCT	2 cut(s)	353, 421
AluI	AGCT	2 cut(s)	353, 421
AlwI	GGATC	3 cut(s)	132, 368, 407
AoxI	GGCC	4 cut(s)	3, 146, 298, 343
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	91
BalI	TGGCCA	3 cut(s)	5, 148, 300
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	1 cut(s)	375
BciT130I	CCWGG	2 cut(s)	358, 450
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	2 cut(s)	49, 201
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bme1390I	CCNGG	2 cut(s)	358, 450
Bme18I	GGWCC	1 cut(s)	91
BmeRI	GACNNNNNGTC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	2 cut(s)	358, 450
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse118I	RCCGGY	1 cut(s)	469
Bse1I	ACTGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	358, 450
BseDI	CCNNGG	1 cut(s)	346
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	63
BshFI	GGCC	4 cut(s)	5, 148, 300, 345
BsiSI	CCGG	1 cut(s)	470
BslI	CCNNNNNNNGG	1 cut(s)	383
BsnI	GGCC	4 cut(s)	5, 148, 300, 345
Bsp143I	GATC	4 cut(s)	124, 373, 412, 441
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	4 cut(s)	5, 148, 300, 345
BspCNI	CTCAG	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	93
BspMAI	CTGCAG	2 cut(s)	53, 205
BspPI	GGATC	3 cut(s)	132, 368, 407
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	469
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	469
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	4 cut(s)	124, 373, 412, 441
BssT1I	CCWWGG	1 cut(s)	346
Bst2UI	CCWGG	2 cut(s)	358, 450
Bst4CI	ACNGT	2 cut(s)	308, 407
BstC8I	GCNNGC	1 cut(s)	455
BstDEI	CTNAG	1 cut(s)	438
BstKTI	GATC	4 cut(s)	127, 376, 415, 444
BstMBI	GATC	4 cut(s)	124, 373, 412, 441
BstNI	CCWGG	2 cut(s)	358, 450
BstSCI	CCNGG	2 cut(s)	356, 448
BstSFI	CTRYAG	2 cut(s)	49, 201
BstV1I	GCAGC	1 cut(s)	63
BstV2I	GAAGAC	1 cut(s)	10
BstX2I	RGATCY	2 cut(s)	373, 412
BstXI	CCANNNNNNTGG	1 cut(s)	341
BstYI	RGATCY	2 cut(s)	373, 412
BsuRI	GGCC	4 cut(s)	5, 148, 300, 345
BtsIMutI	CAGTG	2 cut(s)	313, 412
Cac8I	GCNNGC	1 cut(s)	455
Cfr10I	RCCGGY	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	1 cut(s)	296
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	4 cut(s)	126, 375, 414, 443
DpnII	GATC	4 cut(s)	124, 373, 412, 441
DriI	GACNNNNNGTC	1 cut(s)	14
EaeI	YGGCCR	3 cut(s)	3, 146, 298
Eam1105I	GACNNNNNGTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	356, 448
EcoT14I	CCWWGG	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	1 cut(s)	299
FaiI	YATR	7 cut(s)	43, 56, 87, 161, 279, 297, 396
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FatI	CATG	1 cut(s)	295
FauI	CCCGC	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	52
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	1 cut(s)	52
HaeIII	GGCC	4 cut(s)	5, 148, 300, 345
HapII	CCGG	1 cut(s)	470
Hin1II	CATG	1 cut(s)	299
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	313
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	505
HpyCH4III	ACNGT	2 cut(s)	308, 407
HpyCH4V	TGCA	4 cut(s)	51, 203, 369, 457
HpyF3I	CTNAG	1 cut(s)	438
Hsp92II	CATG	1 cut(s)	299
Kzo9I	GATC	4 cut(s)	124, 373, 412, 441
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	8 cut(s)	19, 206, 343, 370, 435, 462, 483, 489
Lsp1109I	GCAGC	1 cut(s)	63
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	114
MalI	GATC	4 cut(s)	126, 375, 414, 443
MboI	GATC	4 cut(s)	124, 373, 412, 441
MboII	GAAGA	3 cut(s)	10, 26, 422
MflI	RGATCY	2 cut(s)	373, 412
MlsI	TGGCCA	3 cut(s)	5, 148, 300
MluCI	AATT	1 cut(s)	264
MluNI	TGGCCA	3 cut(s)	5, 148, 300
MnlI	CCTC	1 cut(s)	128
Mox20I	TGGCCA	3 cut(s)	5, 148, 300
MscI	TGGCCA	3 cut(s)	5, 148, 300
MseI	TTAA	4 cut(s)	81, 107, 164, 216
MslI	CAYNNNNRTG	1 cut(s)	306
Msp20I	TGGCCA	3 cut(s)	5, 148, 300
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	2 cut(s)	358, 450
MvaI	CCWGG	2 cut(s)	358, 450
NdeII	GATC	4 cut(s)	124, 373, 412, 441
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	1 cut(s)	93
NmeAIII	GCCGAG	1 cut(s)	235
OliI	CACNNNNGTG	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	53
PpuMI	RGGWCCY	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	2 cut(s)	356, 448
PspGI	CCWGG	2 cut(s)	356, 448
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	91
PspPPI	RGGWCCY	1 cut(s)	91
PstI	CTGCAG	2 cut(s)	53, 205
PsuI	RGATCY	2 cut(s)	373, 412
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	4 cut(s)	81, 107, 164, 216
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	4 cut(s)	124, 373, 412, 441
Sau96I	GGNCC	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	358, 450
SetI	ASST	2 cut(s)	355, 423
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	2 cut(s)	49, 201
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	356, 448
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	2 cut(s)	308, 407
TaqI	TCGA	1 cut(s)	388
TasI	AATT	1 cut(s)	264
TatI	WGTACW	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	4 cut(s)	81, 107, 164, 216
Tru9I	TTAA	4 cut(s)	81, 107, 164, 216
TscAI	CASTG	2 cut(s)	313, 412
TseI	GCWGC	1 cut(s)	51
TspDTI	ATGAA	2 cut(s)	284, 411
TspRI	CASTG	2 cut(s)	313, 412
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	264
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.