Rh5AG516800

Belongs to the glycosyl hydrolase 3 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
87739272 .. 87741995
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG516800.1

Sequence Viewer

Length: 804 bp
ATGGTTTTGTTTGTGCAACTGATGATGACTATATATATATTCATGTATGTGCTAGGGAGTGTAATCAGTGGTGCAGGAAGTGGGCCGTTTAGGAAGGCTTTATCGGCGGACTGGGCCGATATGGTTGACGGGTTTCAGAGGTGTGCGCTGGAAACCCGGCTCCGGATTCCATTGATATGTGGGATTGATGCTGTTCATGGGAACAATGGAGTCTTTGGTGCGCCTGGTGCCACTATATTTCCTCACAGTGTTGGTCTTGGGGCTACCAGAGATGCGGATTTGGCTCAAAGGATTGGTGAGGCAACTGCTCTTGAAGTCAGGGCCAGCGGGATTCACTACACTTTTGCTCACTGTGTAGCTGTTAGTCATTGTGAATGTATGCAGAGATCCCAGGGAATTGTGATTTCTGACTGGGACGGTATTGAAATACTCAGTGAGCCTCAAGGGTCAAACTATTGTTTCTGCATTTTATCTGCTGTCAATGCTGGAATTGACATGTTTATGGTGCCTTTCAGATTTGAAAATTTTGTGGATGATTTAGTGAATCTGGTGGAACATGGGGAGATACCAATGTCCAGGATAGATGATGCTGTTGAGAGAATACTGAGAGTGAAGTTTGTTGCTGGTCTTTTTGAACGTCCCTTTTCTGATAGATCTTTGCTGGACAGAGTTGGTTGTAAGCTGCATAGGGATCTGGCACGCGAAGCTGTTCACAAGTCATTCTTAAGCGGCAGGTTCACCATTGGCACAACCATCTTGGAAGCTATCAAGAAGGCAGTTGGAGAGGAAACAGATAATTTATGA

Protein Analysis

267

Amino Acids

29.29

Weight (kDa)

5.47

Isoelectric Point (pI)

25.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_3 PF00933 16 - 123 2.7e-16 Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3 PF00933 131 - 204 3.3e-10 Glycosyl hydrolase family 3 N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 723
AccB1I GGYRCC 2 cut(s) 227, 505
AccII CGCG 1 cut(s) 702
AccIII TCCGGA 1 cut(s) 162
AciI CCGC 4 cut(s) 107, 275, 327, 729
AclWI GGATC 2 cut(s) 381, 699
AcsI RAATTY 1 cut(s) 523
AfiI CCNNNNNNNGG 1 cut(s) 162
AflII CTTAAG 1 cut(s) 724
AflIII ACRYGT 1 cut(s) 495
AgsI TTSAA 4 cut(s) 314, 425, 521, 635
AjnI CCWGG 3 cut(s) 223, 390, 575
AluBI AGCT 4 cut(s) 359, 682, 707, 764
AluI AGCT 4 cut(s) 359, 682, 707, 764
AlwI GGATC 2 cut(s) 381, 699
Aor13HI TCCGGA 1 cut(s) 162
AoxI GGCC 3 cut(s) 83, 114, 321
ApeKI GCWGC 1 cut(s) 682
ApoI RAATTY 1 cut(s) 523
Asp700I GAANNNNTTC 1 cut(s) 708
AspLEI GCGC 2 cut(s) 148, 223
AspS9I GGNCC 3 cut(s) 83, 114, 321
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 308, 730
BaeI ACNNNNGTAYC 2 cut(s) 557, 590
BanI GGYRCC 2 cut(s) 227, 505
BbvI GCAGC 1 cut(s) 669
BccI CCATC 1 cut(s) 761
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 3 cut(s) 225, 392, 577
BcnI CCSGG 1 cut(s) 157
BfaI CTAG 1 cut(s) 53
BfrI CTTAAG 1 cut(s) 724
BfuAI ACCTGC 1 cut(s) 723
BglII AGATCT 1 cut(s) 653
BisI GCNGC 2 cut(s) 683, 730
BlsI GCNGC 2 cut(s) 684, 731
Bme1390I CCNGG 4 cut(s) 157, 225, 392, 577
BmgT120I GGNCC 3 cut(s) 83, 114, 321
BmiI GGNNCC 3 cut(s) 161, 229, 507
BmrFI CCNGG 4 cut(s) 157, 225, 392, 577
BmrI ACTGGG 2 cut(s) 121, 421
BmsI GCATC 3 cut(s) 178, 262, 577
BmuI ACTGGG 2 cut(s) 121, 421
BpuEI CTTGAG 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 390, 391
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 2 cut(s) 116, 416
BseAI TCCGGA 1 cut(s) 162
BseBI CCWGG 3 cut(s) 225, 392, 577
BseDI CCNNGG 2 cut(s) 390, 391
BseGI GGATG 1 cut(s) 538
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMII CTCAG 2 cut(s) 445, 596
BseNI ACTGG 2 cut(s) 116, 416
BseXI GCAGC 1 cut(s) 669
BsgI GTGCAG 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 702
BshFI GGCC 3 cut(s) 85, 116, 323
BshNI GGYRCC 2 cut(s) 227, 505
BsiSI CCGG 2 cut(s) 157, 163
BslFI GGGAC 2 cut(s) 428, 624
BslI CCNNNNNNNGG 1 cut(s) 162
BsmFI GGGAC 2 cut(s) 428, 624
BsnI GGCC 3 cut(s) 85, 116, 323
Bsp13I TCCGGA 1 cut(s) 162
Bsp143I GATC 3 cut(s) 386, 653, 691
BspACI CCGC 4 cut(s) 107, 275, 327, 729
BspANI GGCC 3 cut(s) 85, 116, 323
BspCNI CTCAG 2 cut(s) 444, 597
BspEI TCCGGA 1 cut(s) 162
BspFNI CGCG 1 cut(s) 702
BspLI GGNNCC 3 cut(s) 161, 229, 507
BspMI ACCTGC 1 cut(s) 723
BspPI GGATC 2 cut(s) 381, 699
BspT107I GGYRCC 2 cut(s) 227, 505
BspTI CTTAAG 1 cut(s) 724
BsrI ACTGG 2 cut(s) 116, 416
BssECI CCNNGG 2 cut(s) 390, 391
BssMI GATC 3 cut(s) 386, 653, 691
Bst2UI CCWGG 3 cut(s) 225, 392, 577
Bst4CI ACNGT 3 cut(s) 248, 353, 419
BstAFI CTTAAG 1 cut(s) 724
BstC8I GCNNGC 2 cut(s) 325, 700
BstDEI CTNAG 2 cut(s) 431, 605
BstF5I GGATG 1 cut(s) 538
BstFNI CGCG 1 cut(s) 702
BstHHI GCGC 2 cut(s) 148, 223
BstKTI GATC 3 cut(s) 389, 656, 694
BstMBI GATC 3 cut(s) 386, 653, 691
BstMWI GCNNNNNNNGC 6 cut(s) 104, 113, 227, 281, 482, 704
BstNI CCWGG 3 cut(s) 225, 392, 577
BstNSI RCATGY 1 cut(s) 499
BstSCI CCNGG 4 cut(s) 155, 223, 390, 575
BstUI CGCG 1 cut(s) 702
BstV1I GCAGC 1 cut(s) 669
BstX2I RGATCY 3 cut(s) 386, 653, 691
BstYI RGATCY 3 cut(s) 386, 653, 691
BsuRI GGCC 3 cut(s) 85, 116, 323
BtsCI GGATG 1 cut(s) 538
BtsIMutI CAGTG 4 cut(s) 73, 253, 349, 439
BveI ACCTGC 1 cut(s) 723
Cac8I GCNNGC 2 cut(s) 325, 700
CfoI GCGC 2 cut(s) 148, 223
Cfr13I GGNCC 3 cut(s) 83, 114, 321
CviAII CATG 4 cut(s) 43, 197, 496, 557
DdeI CTNAG 2 cut(s) 431, 605
DpnI GATC 3 cut(s) 388, 655, 693
DpnII GATC 3 cut(s) 386, 653, 691
EciI GGCGGA 1 cut(s) 122
EcoRII CCWGG 3 cut(s) 223, 390, 575
FaeI CATG 4 cut(s) 46, 200, 499, 560
FalI AAGNNNNNCTT 2 cut(s) 707, 739
FaqI GGGAC 2 cut(s) 428, 624
FatI CATG 4 cut(s) 42, 196, 495, 556
FauI CCCGC 1 cut(s) 320
Fnu4HI GCNGC 2 cut(s) 683, 730
FokI GGATG 1 cut(s) 545
Fsp4HI GCNGC 2 cut(s) 683, 730
FspBI CTAG 1 cut(s) 53
GlaI GCGC 2 cut(s) 147, 222
GluI GCNGC 2 cut(s) 683, 730
HaeIII GGCC 3 cut(s) 85, 116, 323
HapII CCGG 2 cut(s) 157, 163
HhaI GCGC 2 cut(s) 148, 223
Hin1II CATG 4 cut(s) 46, 200, 499, 560
Hin6I GCGC 2 cut(s) 146, 221
HinP1I GCGC 2 cut(s) 146, 221
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 4 cut(s) 166, 210, 331, 544
HpaII CCGG 2 cut(s) 157, 163
HphI GGTGA 2 cut(s) 308, 730
Hpy166II GTNNAC 3 cut(s) 127, 712, 738
Hpy188I TCNGA 4 cut(s) 138, 409, 515, 649
Hpy188III TCNNGA 3 cut(s) 163, 311, 769
Hpy8I GTNNAC 3 cut(s) 127, 712, 738
HpyAV CCTTC 2 cut(s) 88, 766
HpyCH4III ACNGT 3 cut(s) 248, 353, 419
HpyCH4IV ACGT 1 cut(s) 637
HpyCH4V TGCA 5 cut(s) 16, 74, 382, 465, 685
HpyF10VI GCNNNNNNNGC 6 cut(s) 104, 113, 227, 281, 482, 704
HpyF3I CTNAG 2 cut(s) 431, 605
HpySE526I ACGT 1 cut(s) 637
Hsp92II CATG 4 cut(s) 46, 200, 499, 560
HspAI GCGC 2 cut(s) 146, 221
Kpn2I TCCGGA 1 cut(s) 162
Kzo9I GATC 3 cut(s) 386, 653, 691
LmnI GCTCC 1 cut(s) 165
Lsp1109I GCAGC 1 cut(s) 669
LweI GCATC 3 cut(s) 178, 262, 577
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 637
MalI GATC 3 cut(s) 388, 655, 693
MboI GATC 3 cut(s) 386, 653, 691
MflI RGATCY 3 cut(s) 386, 653, 691
MluCI AATT 4 cut(s) 396, 489, 523, 796
MlyI GAGTC 1 cut(s) 219
MmeI TCCRAC 1 cut(s) 760
MnlI CCTC 5 cut(s) 132, 252, 292, 450, 778
MroI TCCGGA 1 cut(s) 162
MroXI GAANNNNTTC 1 cut(s) 708
MseI TTAA 1 cut(s) 725
MslI CAYNNNNRTG 3 cut(s) 47, 175, 500
MspA1I CMGCKG 1 cut(s) 327
MspCI CTTAAG 1 cut(s) 724
MspI CCGG 2 cut(s) 157, 163
MspR9I CCNGG 4 cut(s) 157, 225, 392, 577
MvaI CCWGG 3 cut(s) 225, 392, 577
MvnI CGCG 1 cut(s) 702
MwoI GCNNNNNNNGC 6 cut(s) 104, 113, 227, 281, 482, 704
NciI CCSGG 1 cut(s) 157
NdeII GATC 3 cut(s) 386, 653, 691
NlaIII CATG 4 cut(s) 46, 200, 499, 560
NlaIV GGNNCC 3 cut(s) 161, 229, 507
NspI RCATGY 1 cut(s) 499
PasI CCCWGGG 1 cut(s) 391
PciI ACATGT 1 cut(s) 495
PdmI GAANNNNTTC 1 cut(s) 708
PfeI GAWTC 3 cut(s) 166, 331, 544
PfoI TCCNGGA 1 cut(s) 575
PkrI GCNGC 2 cut(s) 684, 731
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PscI ACATGT 1 cut(s) 495
Psp6I CCWGG 3 cut(s) 223, 390, 575
PspGI CCWGG 3 cut(s) 223, 390, 575
PspN4I GGNNCC 3 cut(s) 161, 229, 507
PspPI GGNCC 3 cut(s) 83, 114, 321
PsuI RGATCY 3 cut(s) 386, 653, 691
RseI CAYNNNNRTG 3 cut(s) 47, 175, 500
SaqAI TTAA 1 cut(s) 725
SatI GCNGC 2 cut(s) 683, 730
Sau3AI GATC 3 cut(s) 386, 653, 691
Sau96I GGNCC 3 cut(s) 83, 114, 321
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 4 cut(s) 157, 225, 392, 577
SetI ASST 7 cut(s) 143, 361, 640, 684, 709, 737, 766
SfaNI GCATC 3 cut(s) 178, 262, 577
SmiMI CAYNNNNRTG 3 cut(s) 47, 175, 500
SmlI CTYRAG 2 cut(s) 441, 724
SmoI CTYRAG 2 cut(s) 441, 724
Sse9I AATT 4 cut(s) 396, 489, 523, 796
SsiI CCGC 4 cut(s) 107, 275, 327, 729
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 4 cut(s) 155, 223, 390, 575
TaaI ACNGT 3 cut(s) 248, 353, 419
TaiI ACGT 1 cut(s) 640
TasI AATT 4 cut(s) 396, 489, 523, 796
TauI GCSGC 1 cut(s) 732
TfiI GAWTC 3 cut(s) 166, 331, 544
Tru1I TTAA 1 cut(s) 725
Tru9I TTAA 1 cut(s) 725
TscAI CASTG 4 cut(s) 73, 253, 356, 439
TseI GCWGC 1 cut(s) 682
TspDTI ATGAA 2 cut(s) 31, 185
TspRI CASTG 4 cut(s) 73, 253, 356, 439
Vha464I CTTAAG 1 cut(s) 724
XapI RAATTY 1 cut(s) 523
XceI RCATGY 1 cut(s) 499
XmnI GAANNNNTTC 1 cut(s) 708
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.