Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

54961588 .. 54969376

Gene Structure 7789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCTAGAATTCTCATCTTCTTCATGGAGCTTGTTCTATTATGCTTATGCATAGCAACAATGACGACGAAGGCAGAAGCAGAATGCATGATATATAAGGACCGCAACCAACCCTTAAATACTAGAATCAATGACCTACTGAGCCGGATGACCTTGGAGGAAAAGATTGGCCAAATGACGCAGATAGACCGCAGTGTTGCTTCACCTCAGGTGATGTACAAGTACAAGATTGTGTACGTTTTGAGTGGGGGTGGGAGTGTGCCAGCAAAAAAGGCTTCTGCAGAAACTTGGATTAGAATGGTGAATGATTTTCAAAACGGATCTTTATCGACTCGGCTTGCTATTCCACTGATTTATGGTATTGATGCTATTCATGGCCACAACAATGTCTACAAGGCGACAACCTTTCCTCACAATATTGGACTGGACCCTGAACTTGTTAAGAGGATTGGAGCTGCAACCGCGCTTGAAGTTAGAGCTACAGGAATCCATTATACCTTTGCACCTTGTGTAGCGGTTTGTAGAGATCCAAGATGGGGTTGTTGTTACGAAAGCTACAGTGAAGATCCTAAGCTTGTTCAAGCAATGACTGAGTTCATACCTAGATTACAAGGAGAGATATCAGCTAACTCTAGAAAGGGTGCTCCCTATGTAGCAGGAAACTATAAGGTTGCAGCTCGTGCAAAGCATTATGTGGGAGATGTTGGAACAATCATGGGCCTCAATGAGATAACACTAGGAATTTTAGGTCAAATTCCTAACAATAGTTTATTGAGCATTCACATGCCACCCTACCCCAGTGCAATTATCAAGGGTGTTGCAACCATTATGGTATCTTACTCGAGCTGGAATGGAGTAAAGATGCATGCTAATCGGGGTATTGTCATCTCAGATTGGCAGGGTATTGACATGATCACCTTGCCCCCTAATGCCAATTACGTCTCATATTCAATTATGAAAGGAATCAGAGCTGGCATTGATATGGTTGTTATTATCTCTTTTGGTCTAATTTCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0044042 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

339

Amino Acids

37.33

Weight (kDa)

8.96

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	51 - 295	7.7e-40	Glycosyl hydrolase family 3 N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	1 cut(s)	464
AciI	CCGC	4 cut(s)	103, 190, 462, 515
AclWI	GGATC	3 cut(s)	328, 521, 560
AcoI	YGGCCR	2 cut(s)	169, 376
AcsI	RAATTY	3 cut(s)	9, 741, 753
AdeI	CACNNNGTG	1 cut(s)	509
AfaI	GTAC	3 cut(s)	218, 224, 236
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	4 cut(s)	314, 470, 581, 951
AluBI	AGCT	9 cut(s)	31, 455, 479, 555, 574, 626, 677, 846, 971
AluI	AGCT	9 cut(s)	31, 455, 479, 555, 574, 626, 677, 846, 971
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	1 cut(s)	946
AlwI	GGATC	3 cut(s)	328, 521, 560
Ama87I	CYCGRG	1 cut(s)	841
AoxI	GGCC	3 cut(s)	169, 376, 718
ApeKI	GCWGC	2 cut(s)	455, 674
ApoI	RAATTY	3 cut(s)	9, 741, 753
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	3 cut(s)	100, 427, 718
AsuHPI	GGTGA	4 cut(s)	195, 223, 313, 907
AvaI	CYCGRG	1 cut(s)	841
AvaII	GGWCC	2 cut(s)	100, 427
AxyI	CCTNAGG	1 cut(s)	207
BalI	TGGCCA	2 cut(s)	171, 378
BauI	CACGAG	1 cut(s)	678
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	2 cut(s)	442, 686
BccI	CCATC	1 cut(s)	528
BcgI	CGANNNNNNTGC	2 cut(s)	854, 888
BclI	TGATCA	1 cut(s)	912
BcoDI	GTCTC	1 cut(s)	946
BfaI	CTAG	5 cut(s)	6, 123, 603, 633, 737
BfmI	CTRYAG	3 cut(s)	279, 480, 556
BisI	GCNGC	2 cut(s)	456, 675
BlsI	GCNGC	2 cut(s)	457, 676
Bme18I	GGWCC	2 cut(s)	100, 427
BmeT110I	CYCGRG	1 cut(s)	841
BmgT120I	GGNCC	3 cut(s)	100, 427, 718
BmiI	GGNNCC	1 cut(s)	429
BmrI	ACTGGG	1 cut(s)	792
BmsI	GCATC	2 cut(s)	355, 852
BmuI	ACTGGG	1 cut(s)	792
Bpu10I	CCTNAGC	1 cut(s)	570
BsaBI	GATNNNNATC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	429, 798
Bse21I	CCTNAGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	591
Bse8I	GATNNNNATC	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	153
BseJI	GATNNNNATC	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	4 cut(s)	131, 221, 582, 903
BseNI	ACTGG	2 cut(s)	429, 798
BseXI	GCAGC	2 cut(s)	442, 686
Bsh1236I	CGCG	1 cut(s)	464
BshFI	GGCC	3 cut(s)	171, 378, 720
BsiHKAI	GWGCWC	1 cut(s)	646
BsiHKCI	CYCGRG	1 cut(s)	841
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	1 cut(s)	946
BsmBI	CGTCTC	1 cut(s)	946
BsmI	GAATGC	2 cut(s)	89, 777
BsnI	GGCC	3 cut(s)	171, 378, 720
BsoBI	CYCGRG	1 cut(s)	841
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	4 cut(s)	320, 526, 565, 912
BspACI	CCGC	4 cut(s)	103, 190, 462, 515
BspANI	GGCC	3 cut(s)	171, 378, 720
BspCNI	CTCAG	4 cut(s)	132, 220, 583, 902
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	1 cut(s)	429
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	3 cut(s)	328, 521, 560
BsrDI	GCAATG	1 cut(s)	591
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	429, 798
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	4 cut(s)	320, 526, 565, 912
BssSI	CACGAG	1 cut(s)	678
BssT1I	CCWWGG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	678
Bst4CI	ACNGT	1 cut(s)	560
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstAUI	TGTACA	1 cut(s)	216
BstC8I	GCNNGC	4 cut(s)	264, 339, 867, 973
BstDEI	CTNAG	5 cut(s)	140, 207, 570, 591, 889
BstF5I	GGATG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	4 cut(s)	323, 529, 568, 915
BstMAI	GTCTC	1 cut(s)	946
BstMBI	GATC	4 cut(s)	320, 526, 565, 912
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 461, 680
BstNSI	RCATGY	2 cut(s)	787, 869
BstSFI	CTRYAG	3 cut(s)	279, 480, 556
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	2 cut(s)	442, 686
BstX2I	RGATCY	3 cut(s)	320, 526, 565
BstYI	RGATCY	3 cut(s)	320, 526, 565
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	171, 378, 720
BtsCI	GGATG	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	4 cut(s)	199, 347, 565, 805
Cac8I	GCNNGC	4 cut(s)	264, 339, 867, 973
CfoI	GCGC	1 cut(s)	466
Cfr13I	GGNCC	3 cut(s)	100, 427, 718
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	3 cut(s)	217, 223, 235
CviAII	CATG	7 cut(s)	25, 88, 374, 715, 784, 866, 910
CviQI	GTAC	3 cut(s)	217, 223, 235
DdeI	CTNAG	5 cut(s)	140, 207, 570, 591, 889
DpnI	GATC	4 cut(s)	322, 528, 567, 914
DpnII	GATC	4 cut(s)	320, 526, 565, 912
DraIII	CACNNNGTG	1 cut(s)	509
EaeI	YGGCCR	2 cut(s)	169, 376
Eco130I	CCWWGG	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	621
Eco47I	GGWCC	2 cut(s)	100, 427
Eco81I	CCTNAGG	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	841
EcoRI	GAATTC	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	621
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	3 cut(s)	53, 89, 867
ErhI	CCWWGG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	946
FaeI	CATG	7 cut(s)	28, 91, 377, 718, 787, 869, 913
FatI	CATG	7 cut(s)	24, 87, 373, 714, 783, 865, 909
FbaI	TGATCA	1 cut(s)	912
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	2 cut(s)	456, 675
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	2 cut(s)	456, 675
FspBI	CTAG	5 cut(s)	6, 123, 603, 633, 737
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	2 cut(s)	456, 675
HaeIII	GGCC	3 cut(s)	171, 378, 720
HapII	CCGG	1 cut(s)	145
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	7 cut(s)	28, 91, 377, 718, 787, 869, 913
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	4 cut(s)	126, 331, 486, 963
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	4 cut(s)	195, 223, 313, 907
Hpy166II	GTNNAC	2 cut(s)	235, 391
Hpy188I	TCNGA	3 cut(s)	892, 968, 1019
Hpy188III	TCNNGA	1 cut(s)	633
Hpy8I	GTNNAC	2 cut(s)	235, 391
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	560
HpyCH4IV	ACGT	2 cut(s)	237, 939
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 461, 680
HpyF3I	CTNAG	5 cut(s)	140, 207, 570, 591, 889
HpySE526I	ACGT	2 cut(s)	237, 939
Hsp92II	CATG	7 cut(s)	28, 91, 377, 718, 787, 869, 913
HspAI	GCGC	1 cut(s)	464
Ksp22I	TGATCA	1 cut(s)	912
Kzo9I	GATC	4 cut(s)	320, 526, 565, 912
LmnI	GCTCC	3 cut(s)	28, 452, 649
Lsp1109I	GCAGC	2 cut(s)	442, 686
LweI	GCATC	2 cut(s)	355, 852
MaeI	CTAG	5 cut(s)	6, 123, 603, 633, 737
MaeII	ACGT	2 cut(s)	237, 939
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	4 cut(s)	322, 528, 567, 914
MboI	GATC	4 cut(s)	320, 526, 565, 912
MboII	GAAGA	3 cut(s)	10, 13, 575
MflI	RGATCY	3 cut(s)	320, 526, 565
MhlI	GDGCHC	1 cut(s)	646
MlsI	TGGCCA	2 cut(s)	171, 378
MluCI	AATT	7 cut(s)	9, 741, 753, 804, 934, 951, 1008
MluNI	TGGCCA	2 cut(s)	171, 378
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	685
MnlI	CCTC	5 cut(s)	151, 216, 420, 438, 731
Mox20I	TGGCCA	2 cut(s)	171, 378
Mph1103I	ATGCAT	3 cut(s)	53, 89, 867
MscI	TGGCCA	2 cut(s)	171, 378
MseI	TTAA	2 cut(s)	116, 441
MslI	CAYNNNNRTG	3 cut(s)	384, 782, 980
Msp20I	TGGCCA	2 cut(s)	171, 378
MspI	CCGG	1 cut(s)	145
Mva1269I	GAATGC	2 cut(s)	89, 777
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	3 cut(s)	272, 461, 680
NdeII	GATC	4 cut(s)	320, 526, 565, 912
NlaIII	CATG	7 cut(s)	28, 91, 377, 718, 787, 869, 913
NlaIV	GGNNCC	1 cut(s)	429
NmeAIII	GCCGAG	1 cut(s)	313
NsiI	ATGCAT	3 cut(s)	53, 89, 867
NspI	RCATGY	2 cut(s)	787, 869
PaeI	GCATGC	1 cut(s)	869
PaeR7I	CTCGAG	1 cut(s)	841
PctI	GAATGC	2 cut(s)	89, 777
PfeI	GAWTC	3 cut(s)	126, 486, 963
PkrI	GCNGC	2 cut(s)	457, 676
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	3 cut(s)	100, 427, 718
PspXI	VCTCGAGB	1 cut(s)	841
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	3 cut(s)	320, 526, 565
RsaI	GTAC	3 cut(s)	218, 224, 236
RsaNI	GTAC	3 cut(s)	217, 223, 235
RseI	CAYNNNNRTG	3 cut(s)	384, 782, 980
SaqAI	TTAA	2 cut(s)	116, 441
SatI	GCNGC	2 cut(s)	456, 675
Sau3AI	GATC	4 cut(s)	320, 526, 565, 912
Sau96I	GGNCC	3 cut(s)	100, 427, 718
SchI	GAGTC	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	646
SfaNI	GCATC	2 cut(s)	355, 852
SfcI	CTRYAG	3 cut(s)	279, 480, 556
Sfr274I	CTCGAG	1 cut(s)	841
SinI	GGWCC	2 cut(s)	100, 427
SlaI	CTCGAG	1 cut(s)	841
SmiMI	CAYNNNNRTG	3 cut(s)	384, 782, 980
SmlI	CTYRAG	1 cut(s)	841
SmoI	CTYRAG	1 cut(s)	841
SphI	GCATGC	1 cut(s)	869
Sse9I	AATT	7 cut(s)	9, 741, 753, 804, 934, 951, 1008
SsiI	CCGC	4 cut(s)	103, 190, 462, 515
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	5 cut(s)	6, 123, 603, 633, 737
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	560
TaiI	ACGT	2 cut(s)	240, 942
TaqI	TCGA	2 cut(s)	329, 842
TasI	AATT	7 cut(s)	9, 741, 753, 804, 934, 951, 1008
TatI	WGTACW	2 cut(s)	216, 222
TfiI	GAWTC	3 cut(s)	126, 486, 963
Tru1I	TTAA	2 cut(s)	116, 441
Tru9I	TTAA	2 cut(s)	116, 441
TscAI	CASTG	4 cut(s)	199, 354, 565, 805
TseI	GCWGC	2 cut(s)	455, 674
TspDTI	ATGAA	4 cut(s)	13, 362, 586, 971
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	4 cut(s)	199, 354, 565, 805
VpaK11BI	GGWCC	2 cut(s)	100, 427
XapI	RAATTY	3 cut(s)	9, 741, 753
XbaI	TCTAGA	1 cut(s)	632
XceI	RCATGY	2 cut(s)	787, 869
XhoI	CTCGAG	1 cut(s)	841
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	5 cut(s)	6, 123, 603, 633, 737
Zsp2I	ATGCAT	3 cut(s)	53, 89, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.