RLG00000028847

Lysosomal beta glucosidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000625
Physical Location & Seq
Forward (+)
29213380 .. 29214041
662 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028847

Sequence Viewer

Length: 396 bp
ATGACTTTGGAGGAAAAGATTGGCCAGATGACACAGATAGAGCGCAGTGTTGCTTCAGCTGAGGTCATGAACAAGTACTACATTGGGAGTGTCTTGAGCGGCAGTAGGAGTGTGCCATCAGAAGAAGCTTCTGCAGAAACTTGGGTTACAATGGTGAATGATTTTCAAAAGGGTTCTCTATCAACTCGCCTCGGTATTCCAATGATTTATGGTATTGATGTTGTTCATGGCCACAATAATGTCTACAAGGCAACAATCTTTCCCCACAATGTTGGCCTCGGAGTTACCAGGCAATGGATCAACTGCAGGGACCCTGAACTTGTTAAGGAGATTGGAGCTGCAACTGCACTTGAAGTTAGAGCCAAAGGCATTCCATATGTCTTGCACCATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

132

Amino Acids

14.41

Weight (kDa)

6.5

Isoelectric Point (pI)

29.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_3 PF00933 2 - 124 1.6e-17 Glycosyl hydrolase family 3 N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 294
AccBSI CCGCTC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 243
AciI CCGC 1 cut(s) 99
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 2 cut(s) 22, 229
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 294
AgsI TTSAA 2 cut(s) 167, 353
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 3 cut(s) 59, 128, 338
AluI AGCT 3 cut(s) 59, 128, 338
AlwI GGATC 1 cut(s) 305
AoxI GGCC 3 cut(s) 22, 229, 274
ApeKI GCWGC 1 cut(s) 338
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 166
AvaII GGWCC 1 cut(s) 310
BalI TGGCCA 2 cut(s) 24, 231
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 325
BccI CCATC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 289
BfmI CTRYAG 2 cut(s) 132, 304
BisI GCNGC 2 cut(s) 100, 339
BlsI GCNGC 2 cut(s) 101, 340
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 311, 312
BmrFI CCNGG 1 cut(s) 289
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 190, 277
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 2 cut(s) 190, 277
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMI GCAATG 1 cut(s) 299
BseMII CTCAG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 325
BsgI GTGCAG 1 cut(s) 330
BshFI GGCC 3 cut(s) 24, 231, 276
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 294
BsmFI GGGAC 1 cut(s) 323
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 3 cut(s) 24, 231, 276
Bsp143I GATC 1 cut(s) 297
BspACI CCGC 1 cut(s) 99
BspANI GGCC 3 cut(s) 24, 231, 276
BspCNI CTCAG 1 cut(s) 52
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 311, 312
BspMAI CTGCAG 2 cut(s) 136, 308
BspPI GGATC 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 299
BssECI CCNNGG 2 cut(s) 190, 277
BssMI GATC 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 1 cut(s) 300
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 2 cut(s) 132, 304
BstV1I GCAGC 1 cut(s) 325
BstXI CCANNNNNNTGG 1 cut(s) 272
BsuRI GGCC 3 cut(s) 24, 231, 276
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 52
CciI TCATGA 1 cut(s) 66
CfoI GCGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 76
CviAII CATG 3 cut(s) 67, 227, 389
CviJI RGCY 7 cut(s) 24, 59, 128, 231, 276, 338, 362
CviKI_1 RGCY 7 cut(s) 24, 59, 128, 231, 276, 338, 362
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 60
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
EaeI YGGCCR 2 cut(s) 22, 229
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 287
EcoT22I ATGCAT 1 cut(s) 394
FaeI CATG 3 cut(s) 70, 230, 392
FaiI YATR 7 cut(s) 68, 210, 228, 376, 378, 390, 394
FaqI GGGAC 1 cut(s) 323
FatI CATG 3 cut(s) 66, 226, 388
FauNDI CATATG 1 cut(s) 376
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 100, 339
Fsp4HI GCNGC 2 cut(s) 100, 339
GlaI GCGC 1 cut(s) 44
GluI GCNGC 2 cut(s) 100, 339
HaeIII GGCC 3 cut(s) 24, 231, 276
HhaI GCGC 1 cut(s) 45
Hin1II CATG 3 cut(s) 70, 230, 392
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 126
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 121, 281
Hpy188III TCNNGA 2 cut(s) 67, 94
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4V TGCA 6 cut(s) 134, 306, 341, 347, 385, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 3 cut(s) 70, 230, 392
HspAI GCGC 1 cut(s) 43
KflI GGGWCCC 1 cut(s) 310
Kzo9I GATC 1 cut(s) 297
LmnI GCTCC 1 cut(s) 335
LpnPI CCDG 5 cut(s) 38, 274, 292, 301, 327
Lsp1109I GCAGC 1 cut(s) 325
MaeIII GTNAC 2 cut(s) 145, 283
MalI GATC 1 cut(s) 299
MbiI CCGCTC 1 cut(s) 99
MboI GATC 1 cut(s) 297
MboII GAAGA 1 cut(s) 134
MlsI TGGCCA 2 cut(s) 24, 231
MluNI TGGCCA 2 cut(s) 24, 231
MnlI CCTC 4 cut(s) 4, 55, 200, 287
Mox20I TGGCCA 2 cut(s) 24, 231
Mph1103I ATGCAT 1 cut(s) 394
MscI TGGCCA 2 cut(s) 24, 231
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 237
Msp20I TGGCCA 2 cut(s) 24, 231
MspA1I CMGCKG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 289
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 1 cut(s) 289
MwoI GCNNNNNNNGC 1 cut(s) 344
NdeI CATATG 1 cut(s) 376
NdeII GATC 1 cut(s) 297
NlaIII CATG 3 cut(s) 70, 230, 392
NlaIV GGNNCC 2 cut(s) 311, 312
NsiI ATGCAT 1 cut(s) 394
PagI TCATGA 1 cut(s) 66
PctI GAATGC 1 cut(s) 369
PflMI CCANNNNNTGG 1 cut(s) 294
PkrI GCNGC 2 cut(s) 101, 340
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 2 cut(s) 311, 312
PspPI GGNCC 1 cut(s) 310
PspPPI RGGWCCY 1 cut(s) 310
PsrI GAACNNNNNNTAC 2 cut(s) 62, 94
PstI CTGCAG 2 cut(s) 136, 308
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 2 cut(s) 100, 339
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 310
ScaI AGTACT 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 289
SetI ASST 4 cut(s) 61, 66, 130, 340
SfcI CTRYAG 2 cut(s) 132, 304
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
SsiI CCGC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 287
TatI WGTACW 1 cut(s) 75
TauI GCSGC 1 cut(s) 102
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 52
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 2 cut(s) 83, 215
TspRI CASTG 1 cut(s) 52
Van91I CCANNNNNTGG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 243
ZrmI AGTACT 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.