Rorug03G0185900

Lysosomal beta glucosidase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
16108064 .. 16109559
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0185900.1

Sequence Viewer

Length: 810 bp
ATGGCTGAAAAGAATAAGAGCAAAGTTGTGTGCTCAGATGATGATCACAGTGATGCTGAAGAGAGCAAAAACACATTGGATGACTTAACTCTCCCTCTAGAGAAACTCAACCTTGGCCCAGAAAAGAAGAAGAAGAAGCTTCTCGTTATTGGTCTTGGAGGCTTGCTTTGTCATAGAGTATACCGCACTGAAAAAATCTACATTCCAAATTATCGCCGTCCGGATGCAGCATATGGAAACTACAAGGTTTACAACAGGCCTTACTGTGAAGAATTTATGAAGTTTTGTCTGGAAAGATTTGAAGTGGGAATATGGTCTTCTGCAAGGGAATGGTACTTGGACAATGCCTTGGATTGTGTGATGAAAGGGTTGAGGAGGAAGTTGTTGTTTGCTTGGGATCAAGTGGAGTGTACTGATTCAGGGTTCAAAACCTTGGAGAACCAAAAGAAGCCCATCTTTCTGAAAGAGTTGAAGAAAATATGGGAAAACGAGGGTTTCAAAGCCTCACTTCCATCTTCCATGGGGAAATACTCTTCATTGAACACCTTGTTAATTGATGATAAGGCTTACAAGGCTCTACTAAATCCTGCTCACACAGCCATCTTTCCTCCTGAATACAAGGTTGACCAAGTTGATGACAAGGCTTTAGGTCCTAATGGTGAGTTGAGGCTTTACTTGGAGGGACTTGCAGATGCCGATGATGTTACTTCTTATGTTAAAGATCATCCATTTGGACAGCCAGCAATAACAACTACCCACTCTGATTGGGATTTCTATTCAAAGATCCTTACTCATTTCCAGAAAGATTAA

Protein Analysis

269

Amino Acids

31.0

Weight (kDa)

6.34

Isoelectric Point (pI)

23.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 46 - 235 3e-16 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 180
AccIII TCCGGA 1 cut(s) 220
AciI CCGC 1 cut(s) 184
AclWI GGATC 2 cut(s) 405, 778
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 2 cut(s) 335, 412
AgsI TTSAA 6 cut(s) 302, 427, 472, 499, 541, 780
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw21I GWGCWC 1 cut(s) 35
AlwI GGATC 2 cut(s) 405, 778
Aor13HI TCCGGA 1 cut(s) 220
AoxI GGCC 2 cut(s) 115, 257
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 272
AspS9I GGNCC 2 cut(s) 116, 650
AsuHPI GGTGA 1 cut(s) 671
AvaII GGWCC 1 cut(s) 650
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 239
BccI CCATC 3 cut(s) 461, 520, 608
BceAI ACGGC 1 cut(s) 201
BclI TGATCA 1 cut(s) 43
BfaI CTAG 1 cut(s) 98
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme18I GGWCC 1 cut(s) 650
BmgT120I GGNCC 2 cut(s) 116, 650
BmsI GCATC 3 cut(s) 43, 214, 682
BpiI GAAGAC 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 42
BsaJI CCNNGG 4 cut(s) 112, 348, 432, 519
BsaWI WCCGGW 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 220
BseDI CCNNGG 4 cut(s) 112, 348, 432, 519
BseGI GGATG 3 cut(s) 85, 229, 724
BseJI GATNNNNATC 1 cut(s) 42
BseMII CTCAG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 388
BseXI GCAGC 1 cut(s) 239
BshFI GGCC 2 cut(s) 117, 259
BsiHKAI GWGCWC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 696
BsmFI GGGAC 1 cut(s) 696
BsnI GGCC 2 cut(s) 117, 259
Bsp1286I GDGCHC 1 cut(s) 35
Bsp13I TCCGGA 1 cut(s) 220
Bsp143I GATC 4 cut(s) 43, 397, 721, 783
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 1 cut(s) 184
BspANI GGCC 2 cut(s) 117, 259
BspCNI CTCAG 1 cut(s) 47
BspEI TCCGGA 1 cut(s) 220
BspPI GGATC 2 cut(s) 405, 778
BssECI CCNNGG 4 cut(s) 112, 348, 432, 519
BssMI GATC 4 cut(s) 43, 397, 721, 783
BssNAI GTATAC 1 cut(s) 181
BssT1I CCWWGG 4 cut(s) 112, 348, 432, 519
Bst1107I GTATAC 1 cut(s) 181
Bst4CI ACNGT 2 cut(s) 50, 266
Bst6I CTCTTC 2 cut(s) 54, 538
BstC8I GCNNGC 2 cut(s) 164, 741
BstDEI CTNAG 1 cut(s) 34
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 3 cut(s) 85, 229, 724
BstKTI GATC 4 cut(s) 46, 400, 724, 786
BstMBI GATC 4 cut(s) 43, 397, 721, 783
BstMWI GCNNNNNNNGC 2 cut(s) 572, 596
BstV1I GCAGC 1 cut(s) 239
BstV2I GAAGAC 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 783
BstYI RGATCY 1 cut(s) 783
BstZ17I GTATAC 1 cut(s) 181
BsuRI GGCC 2 cut(s) 117, 259
BtgI CCRYGG 1 cut(s) 519
BtsCI GGATG 3 cut(s) 85, 229, 724
BtsIMutI CAGTG 2 cut(s) 55, 186
Cac8I GCNNGC 2 cut(s) 164, 741
Cfr13I GGNCC 2 cut(s) 116, 650
Csp6I GTAC 2 cut(s) 334, 411
CspCI CAANNNNNGTGG 2 cut(s) 746, 781
CviAII CATG 1 cut(s) 520
CviQI GTAC 2 cut(s) 334, 411
DdeI CTNAG 1 cut(s) 34
DpnI GATC 4 cut(s) 45, 399, 723, 785
DpnII GATC 4 cut(s) 43, 397, 721, 783
Eam1104I CTCTTC 2 cut(s) 54, 538
EarI CTCTTC 2 cut(s) 54, 538
Eco130I CCWWGG 4 cut(s) 112, 348, 432, 519
Eco147I AGGCCT 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 650
Eco57I CTGAAG 1 cut(s) 78
EcoO109I RGGNCCY 1 cut(s) 650
EcoT14I CCWWGG 4 cut(s) 112, 348, 432, 519
ErhI CCWWGG 4 cut(s) 112, 348, 432, 519
FaeI CATG 1 cut(s) 523
FaiI YATR 9 cut(s) 174, 181, 232, 234, 278, 313, 481, 521, 714
FalI AAGNNNNNCTT 4 cut(s) 440, 472, 492, 524
FaqI GGGAC 1 cut(s) 696
FatI CATG 1 cut(s) 519
FauNDI CATATG 1 cut(s) 232
FbaI TGATCA 1 cut(s) 43
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 3 cut(s) 92, 236, 711
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 1 cut(s) 98
GluI GCNGC 1 cut(s) 228
HaeIII GGCC 2 cut(s) 117, 259
HapII CCGG 1 cut(s) 221
Hin1II CATG 1 cut(s) 523
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 1 cut(s) 416
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 671
Hpy166II GTNNAC 4 cut(s) 181, 250, 411, 625
Hpy188I TCNGA 3 cut(s) 37, 462, 763
Hpy188III TCNNGA 5 cut(s) 98, 221, 290, 611, 799
Hpy8I GTNNAC 4 cut(s) 181, 250, 411, 625
HpyCH4III ACNGT 2 cut(s) 50, 266
HpyCH4V TGCA 3 cut(s) 227, 323, 689
HpyF10VI GCNNNNNNNGC 2 cut(s) 572, 596
HpyF3I CTNAG 1 cut(s) 34
Hsp92II CATG 1 cut(s) 523
Kpn2I TCCGGA 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 4 cut(s) 43, 397, 721, 783
LpnPI CCDG 8 cut(s) 132, 234, 241, 275, 405, 600, 624, 753
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 3 cut(s) 43, 214, 682
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 703
MalI GATC 4 cut(s) 45, 399, 723, 785
MboI GATC 4 cut(s) 43, 397, 721, 783
MboII GAAGA 9 cut(s) 71, 139, 142, 145, 281, 309, 484, 507, 525
MflI RGATCY 1 cut(s) 783
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 3 cut(s) 208, 272, 552
MnlI CCTC 9 cut(s) 105, 152, 366, 369, 484, 514, 618, 660, 673
MroI TCCGGA 1 cut(s) 220
MseI TTAA 4 cut(s) 86, 551, 717, 808
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 572, 596
NcoI CCATGG 1 cut(s) 519
NdeI CATATG 1 cut(s) 232
NdeII GATC 4 cut(s) 43, 397, 721, 783
NlaIII CATG 1 cut(s) 523
PceI AGGCCT 1 cut(s) 259
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 1 cut(s) 229
PpuMI RGGWCCY 1 cut(s) 650
Psp5II RGGWCCY 1 cut(s) 650
PspPI GGNCC 2 cut(s) 116, 650
PspPPI RGGWCCY 1 cut(s) 650
PsuI RGATCY 1 cut(s) 783
RsaI GTAC 2 cut(s) 335, 412
RsaNI GTAC 2 cut(s) 334, 411
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 4 cut(s) 86, 551, 717, 808
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 4 cut(s) 43, 397, 721, 783
Sau96I GGNCC 2 cut(s) 116, 650
SduI GDGCHC 1 cut(s) 35
SetI ASST 7 cut(s) 114, 141, 249, 434, 548, 624, 652
SfaNI GCATC 3 cut(s) 43, 214, 682
SinI GGWCC 1 cut(s) 650
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 3 cut(s) 208, 272, 552
SseBI AGGCCT 1 cut(s) 259
SsiI CCGC 1 cut(s) 184
SspMI CTAG 1 cut(s) 98
StuI AGGCCT 1 cut(s) 259
StyI CCWWGG 4 cut(s) 112, 348, 432, 519
TaaI ACNGT 2 cut(s) 50, 266
TasI AATT 3 cut(s) 208, 272, 552
TatI WGTACW 1 cut(s) 410
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 4 cut(s) 86, 551, 717, 808
Tru9I TTAA 4 cut(s) 86, 551, 717, 808
TscAI CASTG 2 cut(s) 55, 193
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 3 cut(s) 293, 377, 525
TspRI CASTG 2 cut(s) 55, 193
VpaK11BI GGWCC 1 cut(s) 650
XapI RAATTY 1 cut(s) 272
XbaI TCTAGA 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.