Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000376.1

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 774

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000376.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 374 bp

atggaaaaagctgaggacttgaattgcatatacagaaacccaaatgagcccattgaagctcgagtgaaggacctcctttctcgcatgactttgagagagaaagtgggccagatgacccaaatagagcgtcgggttgccaccccttctgccattaaagacttctacatagggagtatattgaatgctggaggtagtgggccatttgagaatgctgagtcagcggactgggccgatatggtggacgggtttcagaggtccgctctcgaaacccggctccagattccgatggtgtatgggattgatgcggttcatgggaacaataatgtgtatggtgccaccattttccctcacaatgttggtcttggggctaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

124

Amino Acids

13.66

Weight (kDa)

5.1

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	332
AccBSI	CCGCTC	1 cut(s)	260
AciI	CCGC	3 cut(s)	221, 258, 305
AgsI	TTSAA	3 cut(s)	22, 56, 181
AluBI	AGCT	2 cut(s)	11, 59
AluI	AGCT	2 cut(s)	11, 59
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	3 cut(s)	106, 197, 228
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
AspS9I	GGNCC	5 cut(s)	70, 106, 197, 228, 255
AsuC2I	CCSGG	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	2 cut(s)	70, 255
BanI	GGYRCC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	12
BccI	CCATC	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	2 cut(s)	70, 255
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	5 cut(s)	70, 106, 197, 228, 255
BmiI	GGNNCC	2 cut(s)	275, 334
BmrFI	CCNGG	1 cut(s)	271
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	292
BmuI	ACTGGG	1 cut(s)	235
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
BpmI	CTGGAG	2 cut(s)	207, 260
Bpu10I	CCTNAGC	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	230
BshFI	GGCC	3 cut(s)	108, 199, 230
BshNI	GGYRCC	1 cut(s)	332
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	271
BsmI	GAATGC	2 cut(s)	187, 214
BsnI	GGCC	3 cut(s)	108, 199, 230
BsoBI	CYCGRG	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	51
BspACI	CCGC	3 cut(s)	221, 258, 305
BspANI	GGCC	3 cut(s)	108, 199, 230
BspCNI	CTCAG	2 cut(s)	4, 205
BspLI	GGNNCC	2 cut(s)	275, 334
BspT107I	GGYRCC	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	12, 213
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 227
BstSCI	CCNGG	1 cut(s)	269
BsuRI	GGCC	3 cut(s)	108, 199, 230
Cfr13I	GGNCC	5 cut(s)	70, 106, 197, 228, 255
CseI	GACGC	1 cut(s)	116
CviAII	CATG	2 cut(s)	85, 311
CviJI	RGCY	8 cut(s)	11, 49, 59, 108, 199, 230, 274, 368
CviKI_1	RGCY	8 cut(s)	11, 49, 59, 108, 199, 230, 274, 368
DdeI	CTNAG	2 cut(s)	12, 213
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	2 cut(s)	70, 255
Eco88I	CYCGRG	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	2 cut(s)	88, 314
FaiI	YATR	9 cut(s)	29, 31, 86, 167, 176, 236, 294, 312, 330
FatI	CATG	2 cut(s)	84, 310
FriOI	GRGCYC	1 cut(s)	51
GsuI	CTGGAG	2 cut(s)	207, 260
HaeIII	GGCC	3 cut(s)	108, 199, 230
HapII	CCGG	1 cut(s)	271
HgaI	GACGC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	88, 314
HinfI	GANTC	2 cut(s)	215, 280
HpaII	CCGG	1 cut(s)	271
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	252, 285
Hpy188III	TCNNGA	2 cut(s)	263, 277
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	2 cut(s)	61, 153
HpyCH4V	TGCA	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 227
HpyF3I	CTNAG	2 cut(s)	12, 213
Hsp92II	CATG	2 cut(s)	88, 314
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	5 cut(s)	122, 171, 211, 284, 290
LweI	GCATC	1 cut(s)	292
MbiI	CCGCTC	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	1 cut(s)	22
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	5 cut(s)	7, 83, 182, 246, 357
MseI	TTAA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	271
Mva1269I	GAATGC	2 cut(s)	187, 214
MwoI	GCNNNNNNNGC	2 cut(s)	218, 227
NciI	CCSGG	1 cut(s)	271
NlaIII	CATG	2 cut(s)	88, 314
NlaIV	GGNNCC	2 cut(s)	275, 334
PaeR7I	CTCGAG	1 cut(s)	60
PctI	GAATGC	2 cut(s)	187, 214
PfeI	GAWTC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PpuMI	RGGWCCY	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	275, 334
PspPI	GGNCC	5 cut(s)	70, 106, 197, 228, 255
PspPPI	RGGWCCY	1 cut(s)	70
PspXI	VCTCGAGB	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	153
Sau96I	GGNCC	5 cut(s)	70, 106, 197, 228, 255
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	5 cut(s)	13, 61, 75, 193, 257
SfaNI	GCATC	1 cut(s)	292
Sfr274I	CTCGAG	1 cut(s)	60
SinI	GGWCC	2 cut(s)	70, 255
SlaI	CTCGAG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	1 cut(s)	22
SsiI	CCGC	3 cut(s)	221, 258, 305
StyD4I	CCNGG	1 cut(s)	269
TaqI	TCGA	2 cut(s)	61, 264
TasI	AATT	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TspDTI	ATGAA	1 cut(s)	299
VpaK11BI	GGWCC	2 cut(s)	70, 255
XhoI	CTCGAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.