Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

14648032 .. 14649761

Gene Structure 1730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G092700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCCAAAGTAGAGGATGAAGTCATTGAAGCTCACGTCAAACAACTCCTTTCTCGTATGACTTTGAAAGAGAAGGTCGGCCAGATGACCCAAATCGAGCGCCAGGTCGCCACCTCAGCTGCCATTAAAGACCTCTCCATCGGGAGCATATTCAGTGCCTTGGGCAGCTTGCCGGTTGAGAAGGCTTCTCCGTCAGACTGGGCGGATATGGTAGATGGGTTTCAGAGGTCAGCGCTGGAGTCTAGGCTTGGGATCCCCCTCATATATGGGACTGATGCGGTTCACGGGAATGGTAATGTGTTTGGTGCCACCATATTCCCTCACAATGTTGGTCTTGGCGCCACTAGAGATGCAGATTTTGCTCGAAGGATTGGTGTGGTAACTGCCCTTGAAGCCAGGGCTTGTGGCATTCACTATACTTTCGCTCCTTGTGTGGCTGGAAGATGCTACGAGAGTTACAGTGAAGACACAGAAATTGTAAGCAAGATGACTTCTATTGTTTCAGGCTTGCAGGGGCAGCCACCCCAGGGATACCCAAAGGGCTACCCTTTTGTAGCAGGTGGTAACAGCTGTAATTCTGTTAGAGAGAATCACACTTCTCTCTCTGTCAGTCACACTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

208

Amino Acids

22.12

Weight (kDa)

6.06

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	548
Acc36I	ACCTGC	1 cut(s)	548
AccB1I	GGYRCC	2 cut(s)	305, 338
AciI	CCGC	2 cut(s)	203, 278
AclWI	GGATC	2 cut(s)	247, 260
AcoI	YGGCCR	2 cut(s)	3, 79
AcyI	GRCGYC	1 cut(s)	339
AdeI	CACNNNGTG	1 cut(s)	621
AfeI	AGCGCT	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	527
AgsI	TTSAA	3 cut(s)	29, 67, 392
AjiI	CACGTC	1 cut(s)	37
AjnI	CCWGG	3 cut(s)	102, 395, 525
AluBI	AGCT	4 cut(s)	32, 119, 168, 570
AluI	AGCT	4 cut(s)	32, 119, 168, 570
AlwI	GGATC	2 cut(s)	247, 260
Aor51HI	AGCGCT	1 cut(s)	234
AoxI	GGCC	2 cut(s)	3, 79
ApeKI	GCWGC	3 cut(s)	119, 165, 517
AspLEI	GCGC	3 cut(s)	102, 235, 341
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	252
BanI	GGYRCC	2 cut(s)	305, 338
BbsI	GAAGAC	1 cut(s)	471
BbvCI	CCTCAGC	1 cut(s)	115
BbvI	GCAGC	3 cut(s)	106, 177, 529
BccI	CCATC	2 cut(s)	146, 209
BciT130I	CCWGG	3 cut(s)	104, 397, 527
BciVI	GTATCC	1 cut(s)	524
BfaI	CTAG	2 cut(s)	243, 345
BfoI	RGCGCY	3 cut(s)	103, 236, 342
BfuAI	ACCTGC	1 cut(s)	548
BfuI	GTATCC	1 cut(s)	524
BisI	GCNGC	3 cut(s)	120, 166, 518
BlsI	GCNGC	3 cut(s)	121, 167, 519
Bme1390I	CCNGG	3 cut(s)	104, 397, 527
BmgBI	CACGTC	1 cut(s)	37
BmiI	GGNNCC	3 cut(s)	254, 307, 340
BmrFI	CCNGG	3 cut(s)	104, 397, 527
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	3 cut(s)	265, 340, 434
BmuI	ACTGGG	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	4 cut(s)	159, 396, 525, 526
BsaXI	ACNNNNNCTCC	2 cut(s)	409, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	203
BseBI	CCWGG	3 cut(s)	104, 397, 527
BseDI	CCNNGG	4 cut(s)	159, 396, 525, 526
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	3 cut(s)	106, 177, 529
BshFI	GGCC	2 cut(s)	5, 81
BshNI	GGYRCC	2 cut(s)	305, 338
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	408
BsnI	GGCC	2 cut(s)	5, 81
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	2 cut(s)	203, 278
BspANI	GGCC	2 cut(s)	5, 81
BspCNI	CTCAG	1 cut(s)	128
BspLI	GGNNCC	3 cut(s)	254, 307, 340
BspMI	ACCTGC	1 cut(s)	548
BspPI	GGATC	2 cut(s)	247, 260
BspT107I	GGYRCC	2 cut(s)	305, 338
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	4 cut(s)	159, 396, 525, 526
BssMI	GATC	1 cut(s)	252
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	3 cut(s)	104, 397, 527
Bst4CI	ACNGT	1 cut(s)	461
BstACI	GRCGYC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	170, 509
BstDEI	CTNAG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	22
BstH2I	RGCGCY	3 cut(s)	103, 236, 342
BstHHI	GCGC	3 cut(s)	102, 235, 341
BstKTI	GATC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 359, 392, 517
BstNI	CCWGG	3 cut(s)	104, 397, 527
BstSCI	CCNGG	3 cut(s)	102, 395, 525
BstV1I	GCAGC	3 cut(s)	106, 177, 529
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BsuI	GTATCC	1 cut(s)	524
BsuRI	GGCC	2 cut(s)	5, 81
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	160, 466
BveI	ACCTGC	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	170, 509
CfoI	GCGC	3 cut(s)	102, 235, 341
Cfr10I	RCCGGY	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	115
DinI	GGCGCC	1 cut(s)	340
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
DraIII	CACNNNGTG	1 cut(s)	621
EaeI	YGGCCR	2 cut(s)	3, 79
EciI	GGCGGA	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	159
Eco47III	AGCGCT	1 cut(s)	234
EcoRII	CCWGG	3 cut(s)	102, 395, 525
EcoT14I	CCWWGG	1 cut(s)	159
EgeI	GGCGCC	1 cut(s)	340
EheI	GGCGCC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	159
FaiI	YATR	9 cut(s)	59, 149, 209, 263, 265, 267, 314, 417, 620
FaqI	GGGAC	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	120, 166, 518
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	3 cut(s)	120, 166, 518
FspBI	CTAG	2 cut(s)	243, 345
GlaI	GCGC	3 cut(s)	101, 234, 340
GluI	GCNGC	3 cut(s)	120, 166, 518
GsuI	CTGGAG	1 cut(s)	257
HaeII	RGCGCY	3 cut(s)	103, 236, 342
HaeIII	GGCC	2 cut(s)	5, 81
HapII	CCGG	1 cut(s)	173
HhaI	GCGC	3 cut(s)	102, 235, 341
Hin1I	GRCGYC	1 cut(s)	339
Hin6I	GCGC	3 cut(s)	100, 233, 339
HinP1I	GCGC	3 cut(s)	100, 233, 339
HinfI	GANTC	2 cut(s)	239, 589
HpaII	CCGG	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	196, 225
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	3 cut(s)	67, 175, 360
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	353, 511
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 359, 392, 517
HpyF3I	CTNAG	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	339
HspAI	GCGC	3 cut(s)	100, 233, 339
KasI	GGCGCC	1 cut(s)	338
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	2 cut(s)	144, 430
Lsp1109I	GCAGC	3 cut(s)	106, 177, 529
LweI	GCATC	3 cut(s)	265, 340, 434
MaeI	CTAG	2 cut(s)	243, 345
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	4 cut(s)	379, 455, 563, 611
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	2 cut(s)	453, 476
MflI	RGATCY	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	474, 574
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	6 cut(s)	7, 124, 143, 219, 269, 330
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	288
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	119, 570
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	3 cut(s)	104, 397, 527
Mva1269I	GAATGC	1 cut(s)	408
MvaI	CCWGG	3 cut(s)	104, 397, 527
MwoI	GCNNNNNNNGC	4 cut(s)	116, 359, 392, 517
NarI	GGCGCC	1 cut(s)	339
NdeII	GATC	1 cut(s)	252
NlaIV	GGNNCC	3 cut(s)	254, 307, 340
NmuCI	GTSAC	1 cut(s)	611
PaqCI	CACCTGC	1 cut(s)	548
PasI	CCCWGGG	1 cut(s)	526
PctI	GAATGC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	589
PkrI	GCNGC	3 cut(s)	121, 167, 519
PleI	GAGTC	1 cut(s)	247
PluTI	GGCGCC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	247
Psp6I	CCWGG	3 cut(s)	102, 395, 525
PspGI	CCWGG	3 cut(s)	102, 395, 525
PspN4I	GGNNCC	3 cut(s)	254, 307, 340
PsuI	RGATCY	1 cut(s)	252
PvuII	CAGCTG	2 cut(s)	119, 570
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	3 cut(s)	120, 166, 518
Sau3AI	GATC	1 cut(s)	252
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	3 cut(s)	104, 397, 527
SfaNI	GCATC	3 cut(s)	265, 340, 434
SfoI	GGCGCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	2 cut(s)	474, 574
SsiI	CCGC	2 cut(s)	203, 278
SspDI	GGCGCC	1 cut(s)	338
SspMI	CTAG	2 cut(s)	243, 345
StyD4I	CCNGG	3 cut(s)	102, 395, 525
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	96, 364
TasI	AATT	2 cut(s)	474, 574
TfiI	GAWTC	1 cut(s)	589
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	2 cut(s)	160, 466
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	3 cut(s)	119, 165, 517
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	1 cut(s)	33
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	160, 466
XspI	CTAG	2 cut(s)	243, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.