Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

4384526 .. 4386075

Gene Structure 1550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00003570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTTGACGGGTTTCAGAGGTGTGCGCTGGAAACCCAGCTCCGGATTCCATTGATATATGGGATTGTTGCTGTTCATGGGAACAATAGCGTCTACGGTGCCACTATATTTCCACATAACGTTGGTCTTGGGGCTACCAGAGATGCGGATTTGGCTCAAAGGATTGGTGAGGCAACTGCTCTTGAAGTCAGGGCTAGCGGCATGCACTACACTTTTGCTCCCTGTGTAGCTGTATGCAGAGATCCAAGGTGGGGACTATGCTACAAGAGTTACAGCGAAGACACTGAAATTGTTAGAAAGATGACATCCATTATCTCAGGCTTGCAGGGGAAGCCACCCCAAGGGCATGAAAATGGTTACCCTTTTATAATGGGAAGAAACAACACTATTGCATGCGCCAAGCATTTTGTTGGAGATGGCGGTACACATAAAGGTGTAACTGAGGGAAATAGCATATCATCTTACAATGACTTAGAGAGGATTCAAATGGCACCTTATCTGGACTGCATTTCTCAAGGAGTTTCCACCATTATGGCATCTTATTCCAGCTGGAATGGAAATAGACTACATGCTGATCGTTTTCTCCTGACTGAAATCTTGAAAGAAAAGCTAGGATTTAAGGTGAGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

210

Amino Acids

23.01

Weight (kDa)

7.65

Isoelectric Point (pI)

27.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	9 - 207	2.8e-45	Glycosyl hydrolase family 3 N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AccB1I	GGYRCC	2 cut(s)	98, 490
AccI	GTMKAC	1 cut(s)	93
AccIII	TCCGGA	1 cut(s)	42
AciI	CCGC	3 cut(s)	146, 198, 420
AclI	AACGTT	1 cut(s)	120
AclWI	GGATC	1 cut(s)	236
AfaI	GTAC	1 cut(s)	424
AfiI	CCNNNNNNNGG	3 cut(s)	42, 251, 341
AgsI	TTSAA	3 cut(s)	185, 485, 601
AluBI	AGCT	4 cut(s)	40, 230, 549, 610
AluI	AGCT	4 cut(s)	40, 230, 549, 610
AlwI	GGATC	1 cut(s)	236
Aor13HI	TCCGGA	1 cut(s)	42
AspLEI	GCGC	2 cut(s)	28, 398
AsuHPI	GGTGA	1 cut(s)	179
AsuNHI	GCTAGC	1 cut(s)	194
BanI	GGYRCC	2 cut(s)	98, 490
BbsI	GAAGAC	1 cut(s)	285
BccI	CCATC	1 cut(s)	410
BfaI	CTAG	3 cut(s)	195, 611, 631
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
BmiI	GGNNCC	2 cut(s)	100, 492
BmsI	GCATC	2 cut(s)	133, 545
BmtI	GCTAGC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	498
BsaJI	CCNNGG	2 cut(s)	245, 340
BsaWI	WCCGGW	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 251, 341
BseAI	TCCGGA	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	245, 340
BseGI	GGATG	1 cut(s)	305
BseLI	CCNNNNNNNGG	3 cut(s)	42, 251, 341
BseMII	CTCAG	2 cut(s)	330, 432
BseYI	CCCAGC	1 cut(s)	36
BshNI	GGYRCC	2 cut(s)	98, 490
BsiSI	CCGG	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	3 cut(s)	42, 251, 341
BsmFI	GGGAC	1 cut(s)	267
Bsp13I	TCCGGA	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	241, 574
BspACI	CCGC	3 cut(s)	146, 198, 420
BspCNI	CTCAG	2 cut(s)	329, 433
BspEI	TCCGGA	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	100, 492
BspOI	GCTAGC	1 cut(s)	198
BspPI	GGATC	1 cut(s)	236
BspT107I	GGYRCC	2 cut(s)	98, 490
BssECI	CCNNGG	2 cut(s)	245, 340
BssMI	GATC	2 cut(s)	241, 574
BssT1I	CCWWGG	2 cut(s)	245, 340
Bst4CI	ACNGT	1 cut(s)	98
BstC8I	GCNNGC	4 cut(s)	196, 203, 323, 394
BstDEI	CTNAG	3 cut(s)	316, 441, 472
BstEII	GGTNACC	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	305
BstHHI	GCGC	2 cut(s)	28, 398
BstKTI	GATC	2 cut(s)	244, 577
BstMBI	GATC	2 cut(s)	241, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 331
BstNSI	RCATGY	3 cut(s)	205, 396, 572
BstPI	GGTNACC	1 cut(s)	356
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	4 cut(s)	196, 203, 323, 394
CfoI	GCGC	2 cut(s)	28, 398
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	423
CviAII	CATG	5 cut(s)	77, 202, 347, 393, 569
CviJI	RGCY	9 cut(s)	40, 134, 155, 194, 230, 321, 334, 549, 610
CviKI_1	RGCY	9 cut(s)	40, 134, 155, 194, 230, 321, 334, 549, 610
CviQI	GTAC	1 cut(s)	423
DdeI	CTNAG	3 cut(s)	316, 441, 472
DpnI	GATC	2 cut(s)	243, 576
DpnII	GATC	2 cut(s)	241, 574
Eco130I	CCWWGG	2 cut(s)	245, 340
Eco91I	GGTNACC	1 cut(s)	356
EcoO65I	GGTNACC	1 cut(s)	356
EcoT14I	CCWWGG	2 cut(s)	245, 340
ErhI	CCWWGG	2 cut(s)	245, 340
FaeI	CATG	5 cut(s)	80, 205, 350, 396, 572
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	5 cut(s)	76, 201, 346, 392, 568
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	199
FokI	GGATG	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	199
FspBI	CTAG	3 cut(s)	195, 611, 631
GlaI	GCGC	2 cut(s)	27, 397
GluI	GCNGC	1 cut(s)	199
GsaI	CCCAGC	1 cut(s)	40
HapII	CCGG	1 cut(s)	43
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	2 cut(s)	28, 398
Hin1II	CATG	5 cut(s)	80, 205, 350, 396, 572
Hin6I	GCGC	2 cut(s)	26, 396
HinP1I	GCGC	2 cut(s)	26, 396
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	46, 481
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	3 cut(s)	7, 94, 425
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	5 cut(s)	43, 182, 500, 586, 598
Hpy8I	GTNNAC	3 cut(s)	7, 94, 425
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	5 cut(s)	205, 237, 325, 392, 507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 331
HpyF3I	CTNAG	3 cut(s)	316, 441, 472
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	5 cut(s)	80, 205, 350, 396, 572
HspAI	GCGC	2 cut(s)	26, 396
Kpn2I	TCCGGA	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	241, 574
LmnI	GCTCC	2 cut(s)	45, 223
LweI	GCATC	2 cut(s)	133, 545
MaeI	CTAG	3 cut(s)	195, 611, 631
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	3 cut(s)	269, 356, 436
MalI	GATC	2 cut(s)	243, 576
MboI	GATC	2 cut(s)	241, 574
MboII	GAAGA	2 cut(s)	290, 387
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	4 cut(s)	12, 163, 436, 471
MroI	TCCGGA	1 cut(s)	42
MseI	TTAA	1 cut(s)	618
MslI	CAYNNNNRTG	3 cut(s)	351, 432, 530
MspA1I	CMGCKG	1 cut(s)	549
MspI	CCGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	152, 331
NdeII	GATC	2 cut(s)	241, 574
NheI	GCTAGC	1 cut(s)	194
NlaIII	CATG	5 cut(s)	80, 205, 350, 396, 572
NlaIV	GGNNCC	2 cut(s)	100, 492
NspI	RCATGY	3 cut(s)	205, 396, 572
PaeI	GCATGC	2 cut(s)	205, 396
PfeI	GAWTC	2 cut(s)	46, 481
PkrI	GCNGC	1 cut(s)	200
PsiI	TTATAA	1 cut(s)	368
Psp1406I	AACGTT	1 cut(s)	120
PspEI	GGTNACC	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	100, 492
PsuI	RGATCY	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	549
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
RseI	CAYNNNNRTG	3 cut(s)	351, 432, 530
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	1 cut(s)	199
Sau3AI	GATC	2 cut(s)	241, 574
SfaNI	GCATC	2 cut(s)	133, 545
SmiMI	CAYNNNNRTG	3 cut(s)	351, 432, 530
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
SphI	GCATGC	2 cut(s)	205, 396
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	3 cut(s)	146, 198, 420
SspMI	CTAG	3 cut(s)	195, 611, 631
StyI	CCWWGG	2 cut(s)	245, 340
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	123
TasI	AATT	1 cut(s)	288
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	46, 481
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	65, 363
TspRI	CASTG	1 cut(s)	289
XceI	RCATGY	3 cut(s)	205, 396, 572
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	3 cut(s)	195, 611, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.