Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Forward (+)

85054795 .. 85055592

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35379

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAAACAGCTGAGAACTTAAATTGCATATACAGAAACCCAAACGAACCCATTGAAGCTCGAGTCAAGGACCTCCTTTCTCGCATGACTTTGAAAGAAAAGGTGGGGCAGATGACCCAGATAGAGCGTCAGGTCGCTACACCTTCTGCCATTAAAGACTTCTCAATCGGGAGTGTAATCAGTGGTGCAGGAAGTGGGCCGTTTAGGAAGGCTTTATCGGCGGACTGGGCCGATATGGTTGACGGGTTTCAGAGGTGTGCGCTGGAAACCCGGCTCCGGATTCCATTGATATATGGGATTGATGCTGTTCATGGGAACAATGGAGTCTTTGGTGCGCCTGGTGCCACTATATTTCCTCACAGTGTTGGTCTTGGGGCTACCAGATGCGGATTTGGCTCAAAGGATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

136

Amino Acids

14.68

Weight (kDa)

7.73

Isoelectric Point (pI)

11.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	30 - 128	1.6e-11	Glycosyl hydrolase family 3 N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	341
AccIII	TCCGGA	1 cut(s)	276
AciI	CCGC	2 cut(s)	221, 387
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	56, 94
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	2 cut(s)	11, 59
AluI	AGCT	2 cut(s)	11, 59
Ama87I	CYCGRG	1 cut(s)	60
Aor13HI	TCCGGA	1 cut(s)	276
AoxI	GGCC	2 cut(s)	197, 228
AspLEI	GCGC	2 cut(s)	262, 337
AspS9I	GGNCC	3 cut(s)	70, 197, 228
AsuC2I	CCSGG	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	341
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	271, 339
Bme18I	GGWCC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	3 cut(s)	70, 197, 228
BmiI	GGNNCC	2 cut(s)	275, 343
BmrFI	CCNGG	2 cut(s)	271, 339
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	2 cut(s)	292, 374
BmuI	ACTGGG	1 cut(s)	235
BpuMI	CCSGG	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	230
BseAI	TCCGGA	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	230
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	199, 230
BshNI	GGYRCC	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	271, 277
BslI	CCNNNNNNNGG	1 cut(s)	276
BsnI	GGCC	2 cut(s)	199, 230
BsoBI	CYCGRG	1 cut(s)	60
Bsp13I	TCCGGA	1 cut(s)	276
BspACI	CCGC	2 cut(s)	221, 387
BspANI	GGCC	2 cut(s)	199, 230
BspCNI	CTCAG	1 cut(s)	4
BspEI	TCCGGA	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	275, 343
BspT107I	GGYRCC	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	362
BstDEI	CTNAG	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	262, 337
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 227, 341, 393
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	2 cut(s)	269, 337
BsuRI	GGCC	2 cut(s)	199, 230
BtsIMutI	CAGTG	2 cut(s)	187, 367
CfoI	GCGC	2 cut(s)	262, 337
Cfr13I	GGNCC	3 cut(s)	70, 197, 228
CseI	GACGC	1 cut(s)	116
CviAII	CATG	2 cut(s)	85, 311
CviJI	RGCY	8 cut(s)	11, 59, 199, 212, 230, 274, 377, 396
CviKI_1	RGCY	8 cut(s)	11, 59, 199, 212, 230, 274, 377, 396
DdeI	CTNAG	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	337
FaeI	CATG	2 cut(s)	88, 314
FaiI	YATR	8 cut(s)	29, 31, 86, 236, 292, 294, 312, 350
FatI	CATG	2 cut(s)	84, 310
GlaI	GCGC	2 cut(s)	261, 336
HaeIII	GGCC	2 cut(s)	199, 230
HapII	CCGG	2 cut(s)	271, 277
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	2 cut(s)	262, 337
Hin1II	CATG	2 cut(s)	88, 314
Hin6I	GCGC	2 cut(s)	260, 335
HinP1I	GCGC	2 cut(s)	260, 335
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	3 cut(s)	63, 280, 324
HpaII	CCGG	2 cut(s)	271, 277
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	2 cut(s)	169, 277
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	153, 202
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4V	TGCA	2 cut(s)	27, 188
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 227, 341, 393
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	88, 314
HspAI	GCGC	2 cut(s)	260, 335
Kpn2I	TCCGGA	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	279
LweI	GCATC	2 cut(s)	292, 374
MluCI	AATT	1 cut(s)	22
MlyI	GAGTC	2 cut(s)	72, 333
MnlI	CCTC	3 cut(s)	83, 246, 366
MroI	TCCGGA	1 cut(s)	276
MseI	TTAA	2 cut(s)	20, 153
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	2 cut(s)	271, 277
MspR9I	CCNGG	2 cut(s)	271, 339
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	4 cut(s)	218, 227, 341, 393
NciI	CCSGG	1 cut(s)	271
NlaIII	CATG	2 cut(s)	88, 314
NlaIV	GGNNCC	2 cut(s)	275, 343
PaeR7I	CTCGAG	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	280
PleI	GAGTC	2 cut(s)	71, 332
PpsI	GAGTC	2 cut(s)	71, 332
PpuMI	RGGWCCY	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	275, 343
PspPI	GGNCC	3 cut(s)	70, 197, 228
PspPPI	RGGWCCY	1 cut(s)	70
PspXI	VCTCGAGB	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	20, 153
Sau96I	GGNCC	3 cut(s)	70, 197, 228
SchI	GAGTC	2 cut(s)	72, 333
ScrFI	CCNGG	2 cut(s)	271, 339
SetI	ASST	7 cut(s)	13, 61, 75, 105, 135, 145, 257
SfaNI	GCATC	2 cut(s)	292, 374
Sfr274I	CTCGAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	70
SlaI	CTCGAG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	1 cut(s)	22
SsiI	CCGC	2 cut(s)	221, 387
StyD4I	CCNGG	2 cut(s)	269, 337
TaaI	ACNGT	1 cut(s)	362
TaqI	TCGA	1 cut(s)	61
TasI	AATT	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	20, 153
Tru9I	TTAA	2 cut(s)	20, 153
TscAI	CASTG	2 cut(s)	187, 367
TspDTI	ATGAA	1 cut(s)	299
TspRI	CASTG	2 cut(s)	187, 367
VpaK11BI	GGWCC	1 cut(s)	70
XhoI	CTCGAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.