Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

15765320 .. 15766808

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g15190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTTCAGCGAAAACCCTGATGCTGATTTTGTCAAGTCTAATAACTTTTCCTATGCCATCGTTGCCGTTGGGGAGCCCCCTTATGCTGAGACCAACGGGGATAGCTTGAATTTGACCATTGCAGAACCAGGTCCAAGCACCATCACCAATGTTTGCGGTGGAGTCAAATGCGTGGTTGTCATTGTCTCTGGCCGTCCTGTTGTGATTGAGCCCTACGTTTCCTCGATTGATGCGCTTGTGGCTGCATGGCTTCCGGGAACTGAAGGCCAAGGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

93

Amino Acids

9.51

Weight (kDa)

4.05

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3_C	PF01915	13 - 90	8.6e-12	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	156
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	1 cut(s)	105
AluI	AGCT	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	83, 190
AoxI	GGCC	2 cut(s)	190, 265
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	131
BanII	GRGCYC	2 cut(s)	78, 213
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	2 cut(s)	65, 149
BceAI	ACGGC	2 cut(s)	50, 177
BciT130I	CCWGG	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	2 cut(s)	83, 190
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	2 cut(s)	129, 255
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	129, 255
BmsI	GCATC	2 cut(s)	10, 220
BpuMI	CCSGG	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	229
BshFI	GGCC	2 cut(s)	192, 267
BsiSI	CCGG	1 cut(s)	254
BsmAI	GTCTC	2 cut(s)	83, 190
BsnI	GGCC	2 cut(s)	192, 267
Bso31I	GGTCTC	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	78, 213
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	2 cut(s)	192, 267
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	75
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	268
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	235
BstMAI	GTCTC	2 cut(s)	83, 190
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 239
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	2 cut(s)	127, 253
BstV1I	GCAGC	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	192, 267
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	131
CsiI	ACCWGGT	1 cut(s)	127
CviAII	CATG	1 cut(s)	246
CviJI	RGCY	7 cut(s)	76, 105, 192, 211, 242, 250, 267
CviKI_1	RGCY	7 cut(s)	76, 105, 192, 211, 242, 250, 267
DdeI	CTNAG	1 cut(s)	87
EaeI	YGGCCR	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	2 cut(s)	78, 213
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	268
EcoT38I	GRGCYC	2 cut(s)	78, 213
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	1 cut(s)	249
FaiI	YATR	3 cut(s)	54, 84, 247
FatI	CATG	1 cut(s)	245
Fnu4HI	GCNGC	1 cut(s)	243
FriOI	GRGCYC	2 cut(s)	78, 213
Fsp4HI	GCNGC	1 cut(s)	243
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	192, 267
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	1 cut(s)	249
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HinfI	GANTC	1 cut(s)	162
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	122, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 239
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	249
HspAI	GCGC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	6 cut(s)	30, 114, 141, 174, 210, 267
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	2 cut(s)	10, 220
MabI	ACCWGGT	1 cut(s)	127
MaeII	ACGT	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	78, 213
MluCI	AATT	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	171
MnlI	CCTC	1 cut(s)	232
MseI	TTAA	1 cut(s)	277
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	2 cut(s)	129, 255
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	62, 239
NciI	CCSGG	1 cut(s)	255
NlaIII	CATG	1 cut(s)	249
NlaIV	GGNNCC	1 cut(s)	75
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	277
SatI	GCNGC	1 cut(s)	243
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	2 cut(s)	129, 255
SduI	GDGCHC	2 cut(s)	78, 213
SetI	ASST	3 cut(s)	107, 133, 219
SexAI	ACCWGGT	1 cut(s)	127
SfaNI	GCATC	2 cut(s)	10, 220
SinI	GGWCC	1 cut(s)	131
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	127, 253
StyI	CCWWGG	1 cut(s)	268
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	1 cut(s)	224
TasI	AATT	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	277
Tru9I	TTAA	1 cut(s)	277
TseI	GCWGC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.