Rh3CG363400

Lysosomal beta

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000625
Physical Location & Seq
Forward (+)
45485246 .. 45486370
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG363400.1

Sequence Viewer

Length: 933 bp
ATGTTATCTGGCTGTCTTCTAACACGTCCTTCTGTTTTAACTGCTGGTCACCTACAGATCATGGTTCCATACAACTATACAGAATTCATTGATGGTCTAACTTTCCAGGCAAAAAATAAAATCATTCCCATGAGCAGAATTGATGATGCAGTGAGGAGAATTTTGCGGGTTAAGTTTATAATGGGGCTATTTGAGAATCCGTTGGCTGATCTCAGCCTCGTCAACCAGCTTGGCAGTCAGGAACACAGAGACTTGGCTCGGGAAGCTGTGAGGCGATCGTTAGTTCTTCTAAAGAATGGTGAATCTGCAGACAAGCCATTGCTACCCCTTCCCAAGAAGACATCAAAAATACTTGTAGCTGGAAGTCATGCAGACAATCTTGGTTATCAGTGTGGTGGTTGGACCATTGAGTGGCAGGGATTGAGTGGCAACAATCTCACACATGGTACCACAATCCTAACCGGTATAAAGAACACAGTTGATCCAGAAACCGAAGTGGTGTATAAGGAGAATCCTGATGCGGAGTATGTTAAGTCAAATGATTTCTCCTATGCCATCGTTGTCGTAGGAGAACCACCATATGCGGAGACATTTGGTGACAGTTTAAATTTAACTCTCCCTGATGCGGGCCTTAAAACCATTACAAATGTTTGTGGTGCTGTGAAGTGTGTTGTCATCGTCATCTCCGGTCGTCCTGTTGTGATCCAACCATATGTTCCCCTGCTAGATGCTCTGGTTGCGGCGTGGCTTCCAGGAAGTGAAGGCCAAGGAGTTGCTGATGTTTTGTTTGGTGACTATGGTTTCACCGGCAAGCTTTCTCGCACTTGGTTTAAAACTGTTGATCAGCTGCCTATGAATGTTGGGGATCCACATTATGACCCTCTCTTCCCCTTTGGATTTGGCCTCACAACAACACCCAGCAAAGCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

310

Amino Acids

33.76

Weight (kDa)

5.76

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_3_C PF01915 94 - 303 9.2e-40 Glycosyl hydrolase family 3 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
Acc65I GGTACC 1 cut(s) 446
AccB1I GGYRCC 1 cut(s) 446
AccB7I CCANNNNNTGG 1 cut(s) 411
AciI CCGC 5 cut(s) 166, 521, 584, 626, 740
AclWI GGATC 4 cut(s) 476, 697, 860, 873
AcsI RAATTY 3 cut(s) 83, 159, 607
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 3 cut(s) 411, 625, 626
AflIII ACRYGT 1 cut(s) 23
AgeI ACCGGT 1 cut(s) 461
AjiI CACGTC 1 cut(s) 26
AjnI CCWGG 2 cut(s) 105, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 699, 731
AluBI AGCT 5 cut(s) 229, 266, 359, 814, 847
AluI AGCT 5 cut(s) 229, 266, 359, 814, 847
Alw26I GTCTC 2 cut(s) 243, 581
AlwI GGATC 4 cut(s) 476, 697, 860, 873
Ama87I CYCGRG 1 cut(s) 258
AoxI GGCC 3 cut(s) 628, 763, 901
ApeKI GCWGC 1 cut(s) 847
ApoI RAATTY 3 cut(s) 83, 159, 607
AsiGI ACCGGT 1 cut(s) 461
Asp718I GGTACC 1 cut(s) 446
AspS9I GGNCC 2 cut(s) 402, 628
AsuHPI GGTGA 5 cut(s) 41, 311, 608, 796, 803
AvaI CYCGRG 1 cut(s) 258
AvaII GGWCC 1 cut(s) 402
BamHI GGATCC 1 cut(s) 865
BanI GGYRCC 1 cut(s) 446
BbsI GAAGAC 2 cut(s) 8, 344
BbvI GCAGC 1 cut(s) 834
BccI CCATC 2 cut(s) 86, 563
BciT130I CCWGG 2 cut(s) 107, 753
BclI TGATCA 1 cut(s) 841
BcoDI GTCTC 2 cut(s) 243, 581
BfaI CTAG 2 cut(s) 725, 931
BfmI CTRYAG 2 cut(s) 53, 306
BisI GCNGC 2 cut(s) 741, 848
BlsI GCNGC 2 cut(s) 742, 849
Bme1390I CCNGG 2 cut(s) 107, 753
Bme18I GGWCC 1 cut(s) 402
BmeT110I CYCGRG 1 cut(s) 258
BmgBI CACGTC 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 402, 628
BmiI GGNNCC 3 cut(s) 66, 448, 867
BmrFI CCNGG 2 cut(s) 107, 753
BmsI GCATC 4 cut(s) 136, 508, 613, 718
BpiI GAAGAC 2 cut(s) 8, 344
BsaJI CCNNGG 1 cut(s) 766
BsaWI WCCGGW 2 cut(s) 461, 686
Bsc4I CCNNNNNNNGG 3 cut(s) 411, 625, 626
Bse118I RCCGGY 2 cut(s) 461, 806
Bse3DI GCAATG 1 cut(s) 317
BseBI CCWGG 2 cut(s) 107, 753
BseDI CCNNGG 1 cut(s) 766
BseLI CCNNNNNNNGG 3 cut(s) 411, 625, 626
BseMI GCAATG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 834
BseYI CCCAGC 1 cut(s) 917
Bsh1285I CGRYCG 2 cut(s) 278, 691
BshFI GGCC 3 cut(s) 630, 765, 903
BshNI GGYRCC 1 cut(s) 446
BshTI ACCGGT 1 cut(s) 461
BsiEI CGRYCG 2 cut(s) 278, 691
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 3 cut(s) 462, 687, 807
BslI CCNNNNNNNGG 3 cut(s) 411, 625, 626
BsmAI GTCTC 2 cut(s) 243, 581
BsnI GGCC 3 cut(s) 630, 765, 903
BsoBI CYCGRG 1 cut(s) 258
Bsp143I GATC 7 cut(s) 57, 208, 275, 481, 702, 841, 865
BspACI CCGC 5 cut(s) 166, 521, 584, 626, 740
BspANI GGCC 3 cut(s) 630, 765, 903
BspCNI CTCAG 1 cut(s) 225
BspLI GGNNCC 3 cut(s) 66, 448, 867
BspMAI CTGCAG 1 cut(s) 310
BspPI GGATC 4 cut(s) 476, 697, 860, 873
BspT107I GGYRCC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 317
BsrFI RCCGGY 2 cut(s) 461, 806
BssAI RCCGGY 2 cut(s) 461, 806
BssECI CCNNGG 1 cut(s) 766
BssMI GATC 7 cut(s) 57, 208, 275, 481, 702, 841, 865
BssT1I CCWWGG 1 cut(s) 766
Bst2UI CCWGG 2 cut(s) 107, 753
Bst4CI ACNGT 3 cut(s) 478, 602, 838
Bst6I CTCTTC 1 cut(s) 890
BstC8I GCNNGC 2 cut(s) 628, 812
BstDEI CTNAG 1 cut(s) 212
BstEII GGTNACC 1 cut(s) 47
BstKTI GATC 7 cut(s) 60, 211, 278, 484, 705, 844, 868
BstMAI GTCTC 2 cut(s) 243, 581
BstMBI GATC 7 cut(s) 57, 208, 275, 481, 702, 841, 865
BstMCI CGRYCG 2 cut(s) 278, 691
BstMWI GCNNNNNNNGC 2 cut(s) 263, 737
BstNI CCWGG 2 cut(s) 107, 753
BstPI GGTNACC 1 cut(s) 47
BstSCI CCNGG 2 cut(s) 105, 751
BstSFI CTRYAG 2 cut(s) 53, 306
BstV1I GCAGC 1 cut(s) 834
BstV2I GAAGAC 2 cut(s) 8, 344
BstX2I RGATCY 1 cut(s) 865
BstYI RGATCY 1 cut(s) 865
BsuRI GGCC 3 cut(s) 630, 765, 903
BtrI CACGTC 1 cut(s) 26
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 156, 395
Cac8I GCNNGC 2 cut(s) 628, 812
Cfr10I RCCGGY 2 cut(s) 461, 806
Cfr13I GGNCC 2 cut(s) 402, 628
Csp6I GTAC 1 cut(s) 447
CspAI ACCGGT 1 cut(s) 461
CviAII CATG 4 cut(s) 61, 130, 368, 443
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 1 cut(s) 212
DpnI GATC 7 cut(s) 59, 210, 277, 483, 704, 843, 867
DpnII GATC 7 cut(s) 57, 208, 275, 481, 702, 841, 865
DraI TTTAAA 2 cut(s) 606, 832
Eam1104I CTCTTC 1 cut(s) 890
EarI CTCTTC 1 cut(s) 890
Eco130I CCWWGG 1 cut(s) 766
Eco47I GGWCC 1 cut(s) 402
Eco88I CYCGRG 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 47
EcoO65I GGTNACC 1 cut(s) 47
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 105, 751
EcoT14I CCWWGG 1 cut(s) 766
ErhI CCWWGG 1 cut(s) 766
FaeI CATG 4 cut(s) 64, 133, 371, 446
FatI CATG 4 cut(s) 60, 129, 367, 442
FauI CCCGC 2 cut(s) 159, 619
FauNDI CATATG 2 cut(s) 580, 712
FbaI TGATCA 1 cut(s) 841
Fnu4HI GCNGC 2 cut(s) 741, 848
Fsp4HI GCNGC 2 cut(s) 741, 848
FspBI CTAG 2 cut(s) 725, 931
GluI GCNGC 2 cut(s) 741, 848
GsaI CCCAGC 1 cut(s) 921
HaeIII GGCC 3 cut(s) 630, 765, 903
HapII CCGG 3 cut(s) 462, 687, 807
Hin1II CATG 4 cut(s) 64, 133, 371, 446
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 3 cut(s) 196, 302, 511
HpaII CCGG 3 cut(s) 462, 687, 807
HphI GGTGA 5 cut(s) 41, 311, 608, 796, 803
Hpy166II GTNNAC 1 cut(s) 223
Hpy188III TCNNGA 4 cut(s) 239, 260, 485, 515
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 3 cut(s) 39, 338, 755
HpyCH4III ACNGT 3 cut(s) 478, 602, 838
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 3 cut(s) 149, 308, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 737
HpyF3I CTNAG 1 cut(s) 212
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 4 cut(s) 64, 133, 371, 446
KpnI GGTACC 1 cut(s) 450
Ksp22I TGATCA 1 cut(s) 841
Kzo9I GATC 7 cut(s) 57, 208, 275, 481, 702, 841, 865
Lsp1109I GCAGC 1 cut(s) 834
LweI GCATC 4 cut(s) 136, 508, 613, 718
MaeI CTAG 2 cut(s) 725, 931
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 3 cut(s) 47, 596, 791
MalI GATC 7 cut(s) 59, 210, 277, 483, 704, 843, 867
MboI GATC 7 cut(s) 57, 208, 275, 481, 702, 841, 865
MboII GAAGA 4 cut(s) 8, 278, 349, 877
MflI RGATCY 1 cut(s) 865
MluCI AATT 4 cut(s) 83, 138, 159, 607
MmeI TCCRAC 2 cut(s) 380, 730
MnlI CCTC 5 cut(s) 147, 227, 264, 891, 914
MseI TTAA 7 cut(s) 38, 171, 531, 605, 611, 633, 831
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 847
MspI CCGG 3 cut(s) 462, 687, 807
MspR9I CCNGG 2 cut(s) 107, 753
MvaI CCWGG 2 cut(s) 107, 753
MwoI GCNNNNNNNGC 2 cut(s) 263, 737
NdeI CATATG 2 cut(s) 580, 712
NdeII GATC 7 cut(s) 57, 208, 275, 481, 702, 841, 865
NlaIII CATG 4 cut(s) 64, 133, 371, 446
NlaIV GGNNCC 3 cut(s) 66, 448, 867
NmuCI GTSAC 3 cut(s) 47, 596, 791
PfeI GAWTC 3 cut(s) 196, 302, 511
PflMI CCANNNNNTGG 1 cut(s) 411
PfoI TCCNGGA 1 cut(s) 751
PinAI ACCGGT 1 cut(s) 461
PkrI GCNGC 2 cut(s) 742, 849
Ple19I CGATCG 1 cut(s) 278
PsiI TTATAA 1 cut(s) 179
Psp6I CCWGG 2 cut(s) 105, 751
PspEI GGTNACC 1 cut(s) 47
PspFI CCCAGC 1 cut(s) 917
PspGI CCWGG 2 cut(s) 105, 751
PspN4I GGNNCC 3 cut(s) 66, 448, 867
PspPI GGNCC 2 cut(s) 402, 628
PstI CTGCAG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 865
PvuI CGATCG 1 cut(s) 278
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 7 cut(s) 38, 171, 531, 605, 611, 633, 831
SatI GCNGC 2 cut(s) 741, 848
Sau3AI GATC 7 cut(s) 57, 208, 275, 481, 702, 841, 865
Sau96I GGNCC 2 cut(s) 402, 628
ScrFI CCNGG 2 cut(s) 107, 753
SetI ASST 7 cut(s) 28, 54, 231, 268, 361, 816, 849
SfaNI GCATC 4 cut(s) 136, 508, 613, 718
SfcI CTRYAG 2 cut(s) 53, 306
SinI GGWCC 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 128
Sse9I AATT 4 cut(s) 83, 138, 159, 607
SsiI CCGC 5 cut(s) 166, 521, 584, 626, 740
SspMI CTAG 2 cut(s) 725, 931
StyD4I CCNGG 2 cut(s) 105, 751
StyI CCWWGG 1 cut(s) 766
TaaI ACNGT 3 cut(s) 478, 602, 838
TaiI ACGT 1 cut(s) 28
TasI AATT 4 cut(s) 83, 138, 159, 607
TauI GCSGC 1 cut(s) 743
TfiI GAWTC 3 cut(s) 196, 302, 511
Tru1I TTAA 7 cut(s) 38, 171, 531, 605, 611, 633, 831
Tru9I TTAA 7 cut(s) 38, 171, 531, 605, 611, 633, 831
TscAI CASTG 2 cut(s) 156, 395
TseFI GTSAC 3 cut(s) 47, 596, 791
TseI GCWGC 1 cut(s) 847
Tsp45I GTSAC 3 cut(s) 47, 596, 791
TspDTI ATGAA 2 cut(s) 76, 869
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 2 cut(s) 156, 395
Van91I CCANNNNNTGG 1 cut(s) 411
VpaK11BI GGWCC 1 cut(s) 402
XapI RAATTY 3 cut(s) 83, 159, 607
XspI CTAG 2 cut(s) 725, 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.