Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006084.1

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

90916 .. 96186

Gene Structure 5271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006084.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

atggaaacagctgagaacttaaattgcatatacagaaacccaaacgaacccattgaagctcgagtcaaggacctcctttctcgcatgactttgaaagaaaaggtggggcagatgacccagatagagcgtcaggtcgctacaccttctgccattaaagacttctcaatcggaagtgggccgtttaggaaggctttatcggcggactgggccgatatggttgacgggtttcagaggtgtgcgctggaaacccggctccggattccattgatatatgggattgatgctgttcatgggaacaatggagtctttggtgcgcctggtgccactatatttcctcacagtgttggtcttggggctaccagagatgcggatttggctcaaaggattggtgaggcaactgctcttgaagtcagggccagcgggattcactacacttttgctccctgtgtagctgttagtatgcagtttatggtgcctttcagatttgaaaattttgtggatgatttagtgaatctggtggaacatggggagataccaatgtccaggatagatgatgctgttgagagaatactgagagtgaagtttgttgctggtctttttgaacgtcccttttctgatagatctttgctggacagagttggttgtaaggcacaaccatcttggaagctatcaagaaggcagttggagaggaaacagataatttatgagcaactgccatcgacagataccctagcacgtaaagatacctccgttgcagttgttgctggtggtgaaggttcatatgccgaatgtaagggcgacaacttggagcttgtgattccttttaatggacccgatgtaataagctcagttgctgacagaatccccacattggtgattctgatatctggaagacccttaactgtagagccaagtctcttggaaaagatggatgctcttgttgctgcttggttgcctggtagtgaaggagagggaattgcagatgttatctttggagattataacttcgagggcaagctaccggtgacatggtttaaaagtctgttaaatttgggtggtcgggttcctcgaatgacccgacccatgtacttgggccgagcctatttaagaaatgggccattggaaagttgggtcaatagtgggagggcccaggcctcatactttgactcggagcaaattctttatcaccagttggctagtgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

401

Amino Acids

44.32

Weight (kDa)

5.59

Isoelectric Point (pI)

28.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1002
AccB1I	GGYRCC	2 cut(s)	320, 472
AccIII	TCCGGA	1 cut(s)	255
AciI	CCGC	3 cut(s)	200, 368, 420
AcsI	RAATTY	3 cut(s)	490, 1048, 1176
AfaI	GTAC	1 cut(s)	1088
AfiI	CCNNNNNNNGG	3 cut(s)	255, 827, 871
AgeI	ACCGGT	1 cut(s)	1021
AgsI	TTSAA	5 cut(s)	56, 94, 407, 488, 602
AjnI	CCWGG	4 cut(s)	316, 542, 955, 1149
AleI	CACNNNNGTG	1 cut(s)	872
AluBI	AGCT	7 cut(s)	11, 59, 452, 667, 811, 846, 1018
AluI	AGCT	7 cut(s)	11, 59, 452, 667, 811, 846, 1018
Alw26I	GTCTC	1 cut(s)	920
AlwNI	CAGNNNCTG	1 cut(s)	854
Ama87I	CYCGRG	1 cut(s)	60
Aor13HI	TCCGGA	1 cut(s)	255
AoxI	GGCC	7 cut(s)	176, 207, 414, 1093, 1115, 1146, 1152
ApaI	GGGCCC	1 cut(s)	1150
ApeKI	GCWGC	1 cut(s)	944
ApoI	RAATTY	3 cut(s)	490, 1048, 1176
AsiGI	ACCGGT	1 cut(s)	1021
AspLEI	GCGC	2 cut(s)	241, 316
AspS9I	GGNCC	9 cut(s)	70, 176, 207, 414, 830, 1093, 1115, 1146, 1147
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	5 cut(s)	401, 782, 886, 1036, 1178
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	2 cut(s)	70, 830
BaeGI	GKGCMC	1 cut(s)	1150
BaeI	ACNNNNGTAYC	4 cut(s)	524, 557, 735, 768
BanI	GGYRCC	2 cut(s)	320, 472
BanII	GRGCYC	1 cut(s)	1150
BbsI	GAAGAC	1 cut(s)	898
BbvI	GCAGC	1 cut(s)	931
BccI	CCATC	3 cut(s)	664, 724, 922
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	4 cut(s)	318, 544, 957, 1151
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	920
BfaI	CTAG	2 cut(s)	731, 1197
BfmI	CTRYAG	1 cut(s)	903
BglII	AGATCT	1 cut(s)	620
BisI	GCNGC	1 cut(s)	945
BlsI	GCNGC	1 cut(s)	946
Bme1390I	CCNGG	5 cut(s)	250, 318, 544, 957, 1151
Bme18I	GGWCC	2 cut(s)	70, 830
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	9 cut(s)	70, 176, 207, 414, 830, 1093, 1115, 1146, 1147
BmiI	GGNNCC	6 cut(s)	254, 322, 474, 832, 1065, 1148
BmrFI	CCNGG	5 cut(s)	250, 318, 544, 957, 1151
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	4 cut(s)	271, 355, 544, 922
BmuI	ACTGGG	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	898
BpuMI	CCSGG	1 cut(s)	250
BsaAI	YACGTR	1 cut(s)	737
BsaJI	CCNNGG	1 cut(s)	1149
BsaWI	WCCGGW	2 cut(s)	255, 1021
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	255, 827, 871
Bse118I	RCCGGY	1 cut(s)	1021
Bse1I	ACTGG	2 cut(s)	209, 1189
BseAI	TCCGGA	1 cut(s)	255
BseBI	CCWGG	4 cut(s)	318, 544, 957, 1151
BseDI	CCNNGG	1 cut(s)	1149
BseGI	GGATG	2 cut(s)	505, 937
BseLI	CCNNNNNNNGG	3 cut(s)	255, 827, 871
BseMII	CTCAG	2 cut(s)	563, 861
BseNI	ACTGG	2 cut(s)	209, 1189
BseSI	GKGCMC	1 cut(s)	1150
BseXI	GCAGC	1 cut(s)	931
BshFI	GGCC	7 cut(s)	178, 209, 416, 1095, 1117, 1148, 1154
BshNI	GGYRCC	2 cut(s)	320, 472
BshTI	ACCGGT	1 cut(s)	1021
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	3 cut(s)	250, 256, 1022
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	3 cut(s)	255, 827, 871
BsmAI	GTCTC	1 cut(s)	920
BsmFI	GGGAC	1 cut(s)	591
BsnI	GGCC	7 cut(s)	178, 209, 416, 1095, 1117, 1148, 1154
BsoBI	CYCGRG	1 cut(s)	60
Bsp120I	GGGCCC	1 cut(s)	1146
Bsp1286I	GDGCHC	1 cut(s)	1150
Bsp13I	TCCGGA	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	620
BspACI	CCGC	3 cut(s)	200, 368, 420
BspANI	GGCC	7 cut(s)	178, 209, 416, 1095, 1117, 1148, 1154
BspCNI	CTCAG	3 cut(s)	4, 564, 860
BspEI	TCCGGA	1 cut(s)	255
BspLI	GGNNCC	6 cut(s)	254, 322, 474, 832, 1065, 1148
BspT107I	GGYRCC	2 cut(s)	320, 472
BsrFI	RCCGGY	1 cut(s)	1021
BsrI	ACTGG	2 cut(s)	209, 1189
BssAI	RCCGGY	1 cut(s)	1021
BssECI	CCNNGG	1 cut(s)	1149
BssMI	GATC	1 cut(s)	620
Bst2UI	CCWGG	4 cut(s)	318, 544, 957, 1151
Bst4CI	ACNGT	2 cut(s)	341, 904
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstBAI	YACGTR	1 cut(s)	737
BstC8I	GCNNGC	2 cut(s)	418, 1016
BstDEI	CTNAG	3 cut(s)	12, 572, 847
BstF5I	GGATG	2 cut(s)	505, 937
BstHHI	GCGC	2 cut(s)	241, 316
BstKTI	GATC	1 cut(s)	623
BstMAI	GTCTC	1 cut(s)	920
BstMBI	GATC	1 cut(s)	620
BstMWI	GCNNNNNNNGC	6 cut(s)	197, 206, 320, 374, 761, 941
BstNI	CCWGG	4 cut(s)	318, 544, 957, 1151
BstSCI	CCNGG	5 cut(s)	248, 316, 542, 955, 1149
BstSFI	CTRYAG	1 cut(s)	903
BstSLI	GKGCMC	1 cut(s)	1150
BstV1I	GCAGC	1 cut(s)	931
BstV2I	GAAGAC	1 cut(s)	898
BstX2I	RGATCY	1 cut(s)	620
BstXI	CCANNNNNNTGG	1 cut(s)	1090
BstYI	RGATCY	1 cut(s)	620
BsuRI	GGCC	7 cut(s)	178, 209, 416, 1095, 1117, 1148, 1154
BtsCI	GGATG	2 cut(s)	505, 937
BtsIMutI	CAGTG	1 cut(s)	346
Cac8I	GCNNGC	2 cut(s)	418, 1016
CaiI	CAGNNNCTG	1 cut(s)	854
CfoI	GCGC	2 cut(s)	241, 316
Cfr10I	RCCGGY	1 cut(s)	1021
Cfr13I	GGNCC	9 cut(s)	70, 176, 207, 414, 830, 1093, 1115, 1146, 1147
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	1087
CspAI	ACCGGT	1 cut(s)	1021
CviAII	CATG	5 cut(s)	85, 290, 524, 1029, 1084
CviQI	GTAC	1 cut(s)	1087
DdeI	CTNAG	3 cut(s)	12, 572, 847
DpnI	GATC	1 cut(s)	622
DpnII	GATC	1 cut(s)	620
DraI	TTTAAA	1 cut(s)	1036
EciI	GGCGGA	1 cut(s)	215
Eco147I	AGGCCT	1 cut(s)	1154
Eco24I	GRGCYC	1 cut(s)	1150
Eco32I	GATATC	1 cut(s)	885
Eco47I	GGWCC	2 cut(s)	70, 830
Eco88I	CYCGRG	1 cut(s)	60
EcoO109I	RGGNCCY	2 cut(s)	70, 1146
EcoRII	CCWGG	4 cut(s)	316, 542, 955, 1149
EcoRV	GATATC	1 cut(s)	885
EcoT38I	GRGCYC	1 cut(s)	1150
FaeI	CATG	5 cut(s)	88, 293, 527, 1032, 1087
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	5 cut(s)	84, 289, 523, 1028, 1083
FauI	CCCGC	1 cut(s)	413
FauNDI	CATATG	1 cut(s)	781
Fnu4HI	GCNGC	1 cut(s)	945
FokI	GGATG	2 cut(s)	512, 944
FriOI	GRGCYC	1 cut(s)	1150
Fsp4HI	GCNGC	1 cut(s)	945
FspBI	CTAG	2 cut(s)	731, 1197
GlaI	GCGC	2 cut(s)	240, 315
GluI	GCNGC	1 cut(s)	945
HaeIII	GGCC	7 cut(s)	178, 209, 416, 1095, 1117, 1148, 1154
HapII	CCGG	3 cut(s)	250, 256, 1022
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	2 cut(s)	241, 316
Hin1II	CATG	5 cut(s)	88, 293, 527, 1032, 1087
Hin6I	GCGC	2 cut(s)	239, 314
HinP1I	GCGC	2 cut(s)	239, 314
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	9 cut(s)	63, 259, 303, 424, 511, 817, 861, 877, 1166
HpaII	CCGG	3 cut(s)	250, 256, 1022
HphI	GGTGA	5 cut(s)	401, 782, 886, 1036, 1178
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	6 cut(s)	170, 231, 482, 616, 882, 1171
Hpy188III	TCNNGA	4 cut(s)	256, 404, 672, 888
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	5 cut(s)	153, 181, 669, 767, 959
HpyCH4III	ACNGT	2 cut(s)	341, 904
HpyCH4IV	ACGT	2 cut(s)	604, 736
HpyCH4V	TGCA	4 cut(s)	27, 463, 755, 980
HpyF10VI	GCNNNNNNNGC	6 cut(s)	197, 206, 320, 374, 761, 941
HpyF3I	CTNAG	3 cut(s)	12, 572, 847
HpySE526I	ACGT	2 cut(s)	604, 736
Hsp92II	CATG	5 cut(s)	88, 293, 527, 1032, 1087
HspAI	GCGC	2 cut(s)	239, 314
Kpn2I	TCCGGA	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	620
LmnI	GCTCC	4 cut(s)	258, 445, 808, 1171
Lsp1109I	GCAGC	1 cut(s)	931
LweI	GCATC	4 cut(s)	271, 355, 544, 922
MaeI	CTAG	2 cut(s)	731, 1197
MaeII	ACGT	2 cut(s)	604, 736
MaeIII	GTNAC	1 cut(s)	1024
MalI	GATC	1 cut(s)	622
MboI	GATC	1 cut(s)	620
MboII	GAAGA	1 cut(s)	903
MflI	RGATCY	1 cut(s)	620
MhlI	GDGCHC	1 cut(s)	1150
MluCI	AATT	6 cut(s)	22, 490, 699, 975, 1048, 1176
MlyI	GAGTC	3 cut(s)	72, 312, 1160
MmeI	TCCRAC	1 cut(s)	663
MroI	TCCGGA	1 cut(s)	255
MseI	TTAA	7 cut(s)	20, 153, 825, 899, 1035, 1046, 1106
MslI	CAYNNNNRTG	1 cut(s)	872
MspA1I	CMGCKG	2 cut(s)	11, 420
MspI	CCGG	3 cut(s)	250, 256, 1022
MspR9I	CCNGG	5 cut(s)	250, 318, 544, 957, 1151
MvaI	CCWGG	4 cut(s)	318, 544, 957, 1151
MwoI	GCNNNNNNNGC	6 cut(s)	197, 206, 320, 374, 761, 941
NciI	CCSGG	1 cut(s)	250
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	1 cut(s)	620
NlaIII	CATG	5 cut(s)	88, 293, 527, 1032, 1087
NlaIV	GGNNCC	6 cut(s)	254, 322, 474, 832, 1065, 1148
NmeAIII	GCCGAG	1 cut(s)	1121
NmuCI	GTSAC	1 cut(s)	1024
OliI	CACNNNNGTG	1 cut(s)	872
PaeR7I	CTCGAG	1 cut(s)	60
PceI	AGGCCT	1 cut(s)	1154
PcsI	WCGNNNNNNNCGW	2 cut(s)	1066, 1075
PfeI	GAWTC	6 cut(s)	259, 424, 511, 817, 861, 877
PfoI	TCCNGGA	1 cut(s)	542
PinAI	ACCGGT	1 cut(s)	1021
PkrI	GCNGC	1 cut(s)	946
PleI	GAGTC	3 cut(s)	71, 311, 1160
PpsI	GAGTC	3 cut(s)	71, 311, 1160
Ppu21I	YACGTR	1 cut(s)	737
PpuMI	RGGWCCY	1 cut(s)	70
PsiI	TTATAA	1 cut(s)	1002
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	4 cut(s)	316, 542, 955, 1149
PspGI	CCWGG	4 cut(s)	316, 542, 955, 1149
PspN4I	GGNNCC	6 cut(s)	254, 322, 474, 832, 1065, 1148
PspOMI	GGGCCC	1 cut(s)	1146
PspPI	GGNCC	9 cut(s)	70, 176, 207, 414, 830, 1093, 1115, 1146, 1147
PspPPI	RGGWCCY	1 cut(s)	70
PspXI	VCTCGAGB	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	1 cut(s)	620
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	1 cut(s)	1088
RsaNI	GTAC	1 cut(s)	1087
RseI	CAYNNNNRTG	1 cut(s)	872
SaqAI	TTAA	7 cut(s)	20, 153, 825, 899, 1035, 1046, 1106
SatI	GCNGC	1 cut(s)	945
Sau3AI	GATC	1 cut(s)	620
Sau96I	GGNCC	9 cut(s)	70, 176, 207, 414, 830, 1093, 1115, 1146, 1147
SchI	GAGTC	3 cut(s)	72, 312, 1160
ScrFI	CCNGG	5 cut(s)	250, 318, 544, 957, 1151
SduI	GDGCHC	1 cut(s)	1150
SfaNI	GCATC	4 cut(s)	271, 355, 544, 922
SfcI	CTRYAG	1 cut(s)	903
Sfr274I	CTCGAG	1 cut(s)	60
SinI	GGWCC	2 cut(s)	70, 830
SlaI	CTCGAG	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	872
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	6 cut(s)	22, 490, 699, 975, 1048, 1176
SseBI	AGGCCT	1 cut(s)	1154
SsiI	CCGC	3 cut(s)	200, 368, 420
SspMI	CTAG	2 cut(s)	731, 1197
StuI	AGGCCT	1 cut(s)	1154
StyD4I	CCNGG	5 cut(s)	248, 316, 542, 955, 1149
TaaI	ACNGT	2 cut(s)	341, 904
TaiI	ACGT	2 cut(s)	607, 739
TaqI	TCGA	4 cut(s)	61, 719, 1008, 1069
TasI	AATT	6 cut(s)	22, 490, 699, 975, 1048, 1176
TatI	WGTACW	1 cut(s)	1086
TfiI	GAWTC	6 cut(s)	259, 424, 511, 817, 861, 877
Tru1I	TTAA	7 cut(s)	20, 153, 825, 899, 1035, 1046, 1106
Tru9I	TTAA	7 cut(s)	20, 153, 825, 899, 1035, 1046, 1106
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	1 cut(s)	1024
TseI	GCWGC	1 cut(s)	944
Tsp45I	GTSAC	1 cut(s)	1024
TspDTI	ATGAA	2 cut(s)	278, 768
TspGWI	ACGGA	1 cut(s)	739
TspRI	CASTG	1 cut(s)	346
VpaK11BI	GGWCC	2 cut(s)	70, 830
XapI	RAATTY	3 cut(s)	490, 1048, 1176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1125
XhoI	CTCGAG	1 cut(s)	60
XspI	CTAG	2 cut(s)	731, 1197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.