RchiOBHm_Chr6g0274311

Lysosomal beta glucosidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000625
Physical Location & Seq
Reverse (-)
35773838 .. 35774575
738 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24607

Sequence Viewer

Length: 162 bp
ATGACTTTGGAGGAAAAGATTGGCCAGATGACACAGATAGAGCGCAGTGTTGCTTCAGCTGAGGTCATGAACAAGGACCCTGAACTTGTTAAGAAGATTGGAGCTGCAACTGCACTTGAAGTTAGAGCCACAGGCATAGCGGTTTGTAGAGATCCAAAATGA

Protein Analysis

53

Amino Acids

5.73

Weight (kDa)

6.17

Isoelectric Point (pI)

29.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 140
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 39
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 2 cut(s) 59, 104
AluI AGCT 2 cut(s) 59, 104
AlwI GGATC 1 cut(s) 146
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 76
AvaII GGWCC 1 cut(s) 76
BalI TGGCCA 1 cut(s) 24
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 91
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 78
Bpu10I CCTNAGC 1 cut(s) 60
BseMII CTCAG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 1 cut(s) 24
BsnI GGCC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 1 cut(s) 140
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 1 cut(s) 52
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 1 cut(s) 146
BssMI GATC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 1 cut(s) 24
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 52
CciI TCATGA 1 cut(s) 66
CfoI GCGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 76
CviAII CATG 1 cut(s) 67
CviJI RGCY 4 cut(s) 24, 59, 104, 128
CviKI_1 RGCY 4 cut(s) 24, 59, 104, 128
DdeI CTNAG 1 cut(s) 60
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 76
FaeI CATG 1 cut(s) 70
FaiI YATR 2 cut(s) 68, 137
FatI CATG 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
GlaI GCGC 1 cut(s) 44
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 24
HhaI GCGC 1 cut(s) 45
Hin1II CATG 1 cut(s) 70
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
Hpy188III TCNNGA 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 107, 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 1 cut(s) 70
HspAI GCGC 1 cut(s) 43
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 3 cut(s) 38, 93, 117
Lsp1109I GCAGC 1 cut(s) 91
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 1 cut(s) 106
MflI RGATCY 1 cut(s) 151
MlsI TGGCCA 1 cut(s) 24
MluNI TGGCCA 1 cut(s) 24
MnlI CCTC 2 cut(s) 4, 55
Mox20I TGGCCA 1 cut(s) 24
MscI TGGCCA 1 cut(s) 24
MseI TTAA 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 1 cut(s) 151
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 78
PagI TCATGA 1 cut(s) 66
PkrI GCNGC 1 cut(s) 106
PpuMI RGGWCCY 1 cut(s) 76
Psp5II RGGWCCY 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 76
PspPPI RGGWCCY 1 cut(s) 76
PsuI RGATCY 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 76
SetI ASST 3 cut(s) 61, 66, 106
SgeI CNNG 7 cut(s) 37, 79, 85, 92, 98, 128, 144
SinI GGWCC 1 cut(s) 76
SsiI CCGC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 52
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.