RLG00000008403

Lysosomal beta glucosidase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
30090903 .. 30095090
4188 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008403

Sequence Viewer

Length: 489 bp
ATGGATTTGAGTAGAGGAAGTGTGCTCAATGATGGTGGGAGGGTGCCAGCTCCCAAAGCATCAGCTGAAATATGGGTCAATCTTGTCAATGGAATCCAAAAGGGAGCTCTATTCGGGATTCCTATGATTTATGGGAAAATGTTGGCATACGAGAATGTCATTGGTGGGAAGCTGAAGCTGAAGGGAAAGGCTCTGGAGTCTGGAGGTAGCAAGGGGGAAGAATCAAAGGATCATCTAGAAACTGTCCGTGATGACTTTTTGGGCATAGATTTGCTAGGAAGTGTGCTTAGTGGTGGTGGGAGGGTGCCGGCTCCCAAAGCATCAGCTGAAACCTGGGTCAATCTTGTCAATGGAATCCAAAAGGGAACTCTATTCGAGATTCCTATGATTTATGGGATTGACGCTGTCCATGGCCACAACAATGTCTATAATGCTACCATAATGTTGGATTGGGAGCCACCAGGCAAGTCTTCCACTTTGGCCAAATGA

Protein Analysis

163

Amino Acids

17.16

Weight (kDa)

6.84

Isoelectric Point (pI)

16.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 43, 304
AclWI GGATC 1 cut(s) 237
AcoI YGGCCR 2 cut(s) 412, 480
AcuI CTGAAG 2 cut(s) 194, 200
AjnI CCWGG 2 cut(s) 332, 460
AluBI AGCT 6 cut(s) 50, 65, 107, 172, 178, 326
AluI AGCT 6 cut(s) 50, 65, 107, 172, 178, 326
Alw21I GWGCWC 2 cut(s) 27, 109
AlwI GGATC 1 cut(s) 237
AoxI GGCC 2 cut(s) 412, 480
BalI TGGCCA 2 cut(s) 414, 482
BanI GGYRCC 2 cut(s) 43, 304
BanII GRGCYC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 2 cut(s) 27, 109
BccI CCATC 1 cut(s) 26
BciT130I CCWGG 2 cut(s) 334, 462
BfaI CTAG 2 cut(s) 236, 275
Bme1390I CCNGG 2 cut(s) 334, 462
BmiI GGNNCC 4 cut(s) 45, 306, 312, 456
BmrFI CCNGG 2 cut(s) 334, 462
BmsI GCATC 2 cut(s) 68, 329
BpiI GAAGAC 1 cut(s) 462
BpmI CTGGAG 2 cut(s) 215, 222
BsaJI CCNNGG 2 cut(s) 333, 409
Bse118I RCCGGY 1 cut(s) 307
BseBI CCWGG 2 cut(s) 334, 462
BseDI CCNNGG 2 cut(s) 333, 409
BshFI GGCC 2 cut(s) 414, 482
BshNI GGYRCC 2 cut(s) 43, 304
BsiHKAI GWGCWC 2 cut(s) 27, 109
BsiSI CCGG 1 cut(s) 308
BsnI GGCC 2 cut(s) 414, 482
Bsp1286I GDGCHC 2 cut(s) 27, 109
Bsp143I GATC 1 cut(s) 229
Bsp19I CCATGG 1 cut(s) 409
BspANI GGCC 2 cut(s) 414, 482
BspLI GGNNCC 4 cut(s) 45, 306, 312, 456
BspPI GGATC 1 cut(s) 237
BspT107I GGYRCC 2 cut(s) 43, 304
BsrFI RCCGGY 1 cut(s) 307
BssAI RCCGGY 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 333, 409
BssMI GATC 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 409
Bst2UI CCWGG 2 cut(s) 334, 462
Bst4CI ACNGT 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 48, 309
BstDEI CTNAG 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 409
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 2 cut(s) 56, 317
BstNI CCWGG 2 cut(s) 334, 462
BstSCI CCNGG 2 cut(s) 332, 460
BstV2I GAAGAC 1 cut(s) 462
BstXI CCANNNNNNTGG 1 cut(s) 445
BsuRI GGCC 2 cut(s) 414, 482
BtgI CCRYGG 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 48, 309
Cfr10I RCCGGY 1 cut(s) 307
CseI GACGC 1 cut(s) 410
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 1 cut(s) 410
DdeI CTNAG 1 cut(s) 287
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
EaeI YGGCCR 2 cut(s) 412, 480
Ecl136II GAGCTC 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 2 cut(s) 194, 200
EcoICRI GAGCTC 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 332, 460
EcoT14I CCWWGG 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 1 cut(s) 413
FatI CATG 1 cut(s) 409
FriOI GRGCYC 1 cut(s) 109
FspBI CTAG 2 cut(s) 236, 275
GsuI CTGGAG 2 cut(s) 215, 222
HaeIII GGCC 2 cut(s) 414, 482
HapII CCGG 1 cut(s) 308
HgaI GACGC 1 cut(s) 410
Hin1II CATG 1 cut(s) 413
HinfI GANTC 6 cut(s) 93, 118, 197, 221, 354, 379
HpaII CCGG 1 cut(s) 308
Hpy188III TCNNGA 5 cut(s) 115, 194, 201, 236, 376
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 317
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 1 cut(s) 413
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 4 cut(s) 55, 104, 316, 454
LpnPI CCDG 8 cut(s) 60, 179, 186, 319, 321, 346, 447, 474
LweI GCATC 2 cut(s) 68, 329
MaeI CTAG 2 cut(s) 236, 275
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 2 cut(s) 230, 462
MhlI GDGCHC 2 cut(s) 27, 109
MlsI TGGCCA 2 cut(s) 414, 482
MluNI TGGCCA 2 cut(s) 414, 482
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 4 cut(s) 8, 33, 197, 294
Mox20I TGGCCA 2 cut(s) 414, 482
MroNI GCCGGC 1 cut(s) 307
MscI TGGCCA 2 cut(s) 414, 482
MslI CAYNNNNRTG 1 cut(s) 420
Msp20I TGGCCA 2 cut(s) 414, 482
MspA1I CMGCKG 2 cut(s) 65, 326
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 2 cut(s) 334, 462
MvaI CCWGG 2 cut(s) 334, 462
MwoI GCNNNNNNNGC 2 cut(s) 56, 317
NaeI GCCGGC 1 cut(s) 309
NcoI CCATGG 1 cut(s) 409
NdeII GATC 1 cut(s) 229
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 1 cut(s) 413
NlaIV GGNNCC 4 cut(s) 45, 306, 312, 456
PdiI GCCGGC 1 cut(s) 309
PfeI GAWTC 5 cut(s) 93, 118, 221, 354, 379
PflFI GACNNNGTC 1 cut(s) 404
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 109
Psp6I CCWGG 2 cut(s) 332, 460
PspGI CCWGG 2 cut(s) 332, 460
PspN4I GGNNCC 4 cut(s) 45, 306, 312, 456
PsyI GACNNNGTC 1 cut(s) 404
PvuII CAGCTG 2 cut(s) 65, 326
RseI CAYNNNNRTG 1 cut(s) 420
SacI GAGCTC 1 cut(s) 109
Sau3AI GATC 1 cut(s) 229
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 334, 462
SduI GDGCHC 2 cut(s) 27, 109
SetI ASST 8 cut(s) 52, 67, 109, 174, 180, 208, 328, 335
SfaNI GCATC 2 cut(s) 68, 329
SmiMI CAYNNNNRTG 1 cut(s) 420
SspMI CTAG 2 cut(s) 236, 275
SstI GAGCTC 1 cut(s) 109
StyD4I CCNGG 2 cut(s) 332, 460
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 375
TfiI GAWTC 5 cut(s) 93, 118, 221, 354, 379
TspGWI ACGGA 1 cut(s) 236
Tth111I GACNNNGTC 1 cut(s) 404
XbaI TCTAGA 1 cut(s) 235
XspI CTAG 2 cut(s) 236, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.