RLG00000006403

Lysosomal beta glucosidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000625
Physical Location & Seq
Reverse (-)
6797469 .. 6799028
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006403

Sequence Viewer

Length: 498 bp
ATGGAGGTCGCGGCGTTCGTGCTGAGAAGTGTGCTCAATGATGGTGGGAGGGTGCCGGCTCCCAAAGCATCAGCTGAAATATGGGTCAATCTTGTCAATGGAATCCAAAAGGGAACTCTATTCGGGATTCCTATGATTTATGGGAAAATGTCAGCATACGAGAATGTCATTGGTGGGAAGCTGAAGCTGAAGGCAAAGGCTCTGGAGTCTGGAGGTAGCAAGGGGGAAGAATCAAAGGATCATCTAGAAACTGTCCGTGATGACTTTTTGGGCATAGATTTGCTAGGAAGTGTGCTTAGTGGTGGTGGGAGGGTGCCGGCTCCCAAAGCATCAGCTGAAACCTGGGTCAATCTTGTCAATGGAATCCAAAAGGGAACTCTATTCGAGATTCCTATGATTTATGGGATTGACGCTGTCCATGGCCACGACAATGTCTATAATGCTACCATAATGTTGGATTGGGAGCCACCAGGCAAGTCTTCCACTTTGGCCAAATGA

Protein Analysis

166

Amino Acids

17.53

Weight (kDa)

6.29

Isoelectric Point (pI)

22.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 52, 313
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 11
AclWI GGATC 1 cut(s) 246
AcoI YGGCCR 2 cut(s) 421, 489
AcuI CTGAAG 2 cut(s) 203, 209
AjnI CCWGG 2 cut(s) 341, 469
AluBI AGCT 4 cut(s) 74, 181, 187, 335
AluI AGCT 4 cut(s) 74, 181, 187, 335
Alw21I GWGCWC 1 cut(s) 36
AlwI GGATC 1 cut(s) 246
AoxI GGCC 2 cut(s) 421, 489
BalI TGGCCA 2 cut(s) 423, 491
BanI GGYRCC 2 cut(s) 52, 313
BbsI GAAGAC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 36
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 2 cut(s) 343, 471
BfaI CTAG 2 cut(s) 245, 284
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 343, 471
BmiI GGNNCC 5 cut(s) 54, 60, 315, 321, 465
BmrFI CCNGG 2 cut(s) 343, 471
BmsI GCATC 2 cut(s) 77, 338
BpiI GAAGAC 1 cut(s) 471
BpmI CTGGAG 2 cut(s) 224, 231
BsaJI CCNNGG 2 cut(s) 342, 418
Bse118I RCCGGY 2 cut(s) 55, 316
BseBI CCWGG 2 cut(s) 343, 471
BseDI CCNNGG 2 cut(s) 342, 418
BseMII CTCAG 1 cut(s) 14
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 423, 491
BshNI GGYRCC 2 cut(s) 52, 313
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 2 cut(s) 56, 317
BsnI GGCC 2 cut(s) 423, 491
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 238
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 1 cut(s) 11
BspANI GGCC 2 cut(s) 423, 491
BspCNI CTCAG 1 cut(s) 15
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 5 cut(s) 54, 60, 315, 321, 465
BspPI GGATC 1 cut(s) 246
BspT107I GGYRCC 2 cut(s) 52, 313
BsrFI RCCGGY 2 cut(s) 55, 316
BssAI RCCGGY 2 cut(s) 55, 316
BssECI CCNNGG 2 cut(s) 342, 418
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 418
Bst2UI CCWGG 2 cut(s) 343, 471
Bst4CI ACNGT 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 57, 318
BstDEI CTNAG 2 cut(s) 23, 296
BstDSI CCRYGG 1 cut(s) 418
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 65, 326
BstNI CCWGG 2 cut(s) 343, 471
BstSCI CCNGG 2 cut(s) 341, 469
BstUI CGCG 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 471
BstXI CCANNNNNNTGG 1 cut(s) 454
BsuRI GGCC 2 cut(s) 423, 491
BtgI CCRYGG 1 cut(s) 418
Cac8I GCNNGC 2 cut(s) 57, 318
Cfr10I RCCGGY 2 cut(s) 55, 316
CseI GACGC 1 cut(s) 419
CspCI CAANNNNNGTGG 2 cut(s) 25, 60
CviAII CATG 1 cut(s) 419
DdeI CTNAG 2 cut(s) 23, 296
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 2 cut(s) 421, 489
Eco130I CCWWGG 1 cut(s) 418
Eco57I CTGAAG 2 cut(s) 203, 209
EcoRII CCWGG 2 cut(s) 341, 469
EcoT14I CCWWGG 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 418
FaeI CATG 1 cut(s) 422
FatI CATG 1 cut(s) 418
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 2 cut(s) 245, 284
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 2 cut(s) 224, 231
HaeIII GGCC 2 cut(s) 423, 491
HapII CCGG 2 cut(s) 56, 317
HgaI GACGC 1 cut(s) 419
Hin1II CATG 1 cut(s) 422
HinfI GANTC 6 cut(s) 102, 127, 206, 230, 363, 388
HpaII CCGG 2 cut(s) 56, 317
Hpy188III TCNNGA 5 cut(s) 124, 203, 210, 245, 385
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 326
HpyF3I CTNAG 2 cut(s) 23, 296
Hsp92II CATG 1 cut(s) 422
KroI GCCGGC 2 cut(s) 55, 316
KroNI GCCGGC 2 cut(s) 57, 318
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 3 cut(s) 64, 325, 463
LpnPI CCDG 8 cut(s) 69, 188, 195, 328, 330, 355, 456, 483
LweI GCATC 2 cut(s) 77, 338
MaeI CTAG 2 cut(s) 245, 284
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 2 cut(s) 239, 471
MhlI GDGCHC 1 cut(s) 36
MlsI TGGCCA 2 cut(s) 423, 491
MluNI TGGCCA 2 cut(s) 423, 491
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 3 cut(s) 42, 206, 303
Mox20I TGGCCA 2 cut(s) 423, 491
MroNI GCCGGC 2 cut(s) 55, 316
MscI TGGCCA 2 cut(s) 423, 491
MslI CAYNNNNRTG 1 cut(s) 429
Msp20I TGGCCA 2 cut(s) 423, 491
MspA1I CMGCKG 2 cut(s) 74, 335
MspI CCGG 2 cut(s) 56, 317
MspR9I CCNGG 2 cut(s) 343, 471
MvaI CCWGG 2 cut(s) 343, 471
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 65, 326
NaeI GCCGGC 2 cut(s) 57, 318
NcoI CCATGG 1 cut(s) 418
NdeII GATC 1 cut(s) 238
NgoMIV GCCGGC 2 cut(s) 55, 316
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 5 cut(s) 54, 60, 315, 321, 465
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PdiI GCCGGC 2 cut(s) 57, 318
PfeI GAWTC 5 cut(s) 102, 127, 230, 363, 388
PflFI GACNNNGTC 2 cut(s) 413, 431
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 341, 469
PspGI CCWGG 2 cut(s) 341, 469
PspN4I GGNNCC 5 cut(s) 54, 60, 315, 321, 465
PsyI GACNNNGTC 2 cut(s) 413, 431
PvuII CAGCTG 2 cut(s) 74, 335
RseI CAYNNNNRTG 1 cut(s) 429
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 238
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 2 cut(s) 343, 471
SduI GDGCHC 1 cut(s) 36
SetI ASST 7 cut(s) 9, 76, 183, 189, 217, 337, 344
SfaNI GCATC 2 cut(s) 77, 338
SmiMI CAYNNNNRTG 1 cut(s) 429
SsiI CCGC 1 cut(s) 11
SspMI CTAG 2 cut(s) 245, 284
StyD4I CCNGG 2 cut(s) 341, 469
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 384
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 5 cut(s) 102, 127, 230, 363, 388
TspGWI ACGGA 1 cut(s) 245
Tth111I GACNNNGTC 2 cut(s) 413, 431
XbaI TCTAGA 1 cut(s) 244
XspI CTAG 2 cut(s) 245, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.