Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

47019302 .. 47020159

Gene Structure 858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32710

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGTCTGTTTGAGAACCCCTTGGCTGATGAGAGCTTTGTTGACCAGCTTGGAAGCCAGTGTGGTAGCTGGAGTGTCACTTGGCAAGGAGTTACTGGAAACAACTATACTTCTGCCACCATCCTAAGTGCCATCACAGCTGCAGTAGACCCCAGCACCGAAATCATCTTCAGTGAAAGTCCCGGCGCTGATTTTGTCAAGGAAAACAACTTCTCCTATGCCATTGTTGTTGTTGGAGAGCTCCCTTATGCGGAGACAAACGGGGACAATTTAAATTTGACAATTGCACAACCGGGTCCAAGCACCATCACCAATGTATGTGGCAAAGTCAAGTGTGTGGTTGTAGTAATCTCTGGCCGTCCTGTTGTGATCGAACCCTACATTTCATTGATGGATGCTCTTGTGGCTGCATGGCTACCTGGAACTGAAGGTCAAGGAGTTACAGATGTTCTCTTTGGCGATTATTTACCGGCAAGCTTCCTAGGACTTGGTTCAAGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

167

Amino Acids

17.55

Weight (kDa)

4.05

Isoelectric Point (pI)

26.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3_C	PF01915	20 - 158	1.2e-18	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	1 cut(s)	274
AcuI	CTGAAG	2 cut(s)	154, 447
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	1 cut(s)	495
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	6 cut(s)	36, 49, 69, 140, 241, 477
AluI	AGCT	6 cut(s)	36, 49, 69, 140, 241, 477
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	248
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	2 cut(s)	140, 407
ApoI	RAATTY	1 cut(s)	274
AspA2I	CCTAGG	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	296
AsuC2I	CCSGG	2 cut(s)	183, 294
AsuHPI	GGTGA	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	296
AvrII	CCTAGG	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	127, 394
BccI	CCATC	4 cut(s)	128, 140, 314, 385
BceAI	ACGGC	1 cut(s)	342
BciT130I	CCWGG	1 cut(s)	420
BcnI	CCSGG	2 cut(s)	183, 294
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	2 cut(s)	141, 408
BlnI	CCTAGG	1 cut(s)	481
BlsI	GCNGC	2 cut(s)	142, 409
Bme1390I	CCNGG	3 cut(s)	183, 294, 420
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	3 cut(s)	183, 294, 420
BmsI	GCATC	1 cut(s)	385
BpmI	CTGGAG	1 cut(s)	91
BpuMI	CCSGG	2 cut(s)	183, 294
BsaJI	CCNNGG	2 cut(s)	21, 481
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse118I	RCCGGY	1 cut(s)	469
Bse1I	ACTGG	2 cut(s)	58, 100
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	21, 481
BseGI	GGATG	2 cut(s)	120, 400
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseNI	ACTGG	2 cut(s)	58, 100
BseXI	GCAGC	2 cut(s)	127, 394
BseYI	CCCAGC	1 cut(s)	152
BshFI	GGCC	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	3 cut(s)	183, 293, 470
BslFI	GGGAC	2 cut(s)	165, 278
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	2 cut(s)	165, 278
BsnI	GGCC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	369
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	297
BspMAI	CTGCAG	1 cut(s)	145
BsrFI	RCCGGY	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	58, 100
BssAI	RCCGGY	1 cut(s)	469
BssECI	CCNNGG	2 cut(s)	21, 481
BssMI	GATC	1 cut(s)	369
BssT1I	CCWWGG	2 cut(s)	21, 481
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	120, 400
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 404
BstNI	CCWGG	1 cut(s)	420
BstSCI	CCNGG	3 cut(s)	181, 292, 418
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	127, 394
BsuRI	GGCC	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	120, 400
BtsIMutI	CAGTG	2 cut(s)	65, 178
Cac8I	GCNNGC	1 cut(s)	475
CfoI	GCGC	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	296
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	1 cut(s)	411
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
DraI	TTTAAA	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	355
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	2 cut(s)	21, 481
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	296
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	2 cut(s)	154, 447
EcoICRI	GAGCTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	2 cut(s)	21, 481
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	2 cut(s)	21, 481
FaeI	CATG	1 cut(s)	414
FaiI	YATR	5 cut(s)	108, 219, 249, 319, 412
FaqI	GGGAC	2 cut(s)	165, 278
FatI	CATG	1 cut(s)	410
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	141, 408
FokI	GGATG	2 cut(s)	107, 407
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	2 cut(s)	141, 408
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	2 cut(s)	141, 408
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	91
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	3 cut(s)	183, 293, 470
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	414
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	475
HpaII	CCGG	3 cut(s)	183, 293, 470
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	2 cut(s)	43, 148
Hpy188III	TCNNGA	1 cut(s)	495
Hpy8I	GTNNAC	2 cut(s)	43, 148
HpyAV	CCTTC	1 cut(s)	422
HpyCH4III	ACNGT	1 cut(s)	501
HpyCH4V	TGCA	3 cut(s)	143, 287, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 404
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	414
HspAI	GCGC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	2 cut(s)	127, 394
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	1 cut(s)	482
MaeIII	GTNAC	3 cut(s)	76, 91, 439
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	1 cut(s)	160
MfeI	CAATTG	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	3 cut(s)	268, 274, 282
MmeI	TCCRAC	1 cut(s)	214
MseI	TTAA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	3 cut(s)	183, 293, 470
MspR9I	CCNGG	3 cut(s)	183, 294, 420
MunI	CAATTG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	2 cut(s)	137, 404
NciI	CCSGG	2 cut(s)	183, 294
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	1 cut(s)	414
NlaIV	GGNNCC	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	142, 409
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	2 cut(s)	141, 408
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	1 cut(s)	296
ScrFI	CCNGG	3 cut(s)	183, 294, 420
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	8 cut(s)	38, 51, 71, 142, 243, 421, 433, 479
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	296
SmiI	ATTTAAAT	1 cut(s)	273
Sse9I	AATT	3 cut(s)	268, 274, 282
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	482
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	3 cut(s)	181, 292, 418
StyI	CCWWGG	2 cut(s)	21, 481
SwaI	ATTTAAAT	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	501
TaqI	TCGA	1 cut(s)	372
TasI	AATT	3 cut(s)	268, 274, 282
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	2 cut(s)	65, 178
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	2 cut(s)	140, 407
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	65, 178
VpaK11BI	GGWCC	1 cut(s)	296
XapI	RAATTY	1 cut(s)	274
XmaJI	CCTAGG	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.