Rh5AG519000

Belongs to the glycosyl hydrolase 3 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
88509289 .. 88512344
3056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG519000.1

Sequence Viewer

Length: 1062 bp
ATGGTTGACGGGTTTCAGAGGTGTGCGCTGGAAACCCGGCTCCGGATTCCATTGATATATGGGATTGATGCTGTTCATGGGAACAATGGAGTCTTTGGTGCGCCTGGTGCCACTATATTTCCTCACAGTGTTGGTCTTGGGGCTACCAGAGATGCGGATTTGGCTCAAAGGATTGGTGAGGCAACTGCTCTTGAAGTCAGGGCCAGCGGGATTCACTACACTTTTGCTCCCTGTGTAGCTGTATGCAGAGAGCCCAGGTGGGGACGATGCTACGAGAGTTACAGCGAAGACACTGAAATTGTTAGAAAGATGACATCGATTTTCTCAGGCTTGCAGGGGAAGCCACCCCAAGGGCATGAAAATGGCTACCCTTTTATAATGGGAAGATTTGAAAATTTTGTGGATGATTTAGTGAATCTGGTGGAACATGGGGAGATACCAATGTCCAGGATAGATGATGCTGTTGAGAGAATACTGAGAGTGAAGTTTGTTGCTGGTCTTTTTGAACGTCCCTTTTCTGATAGATCTTTGCTGGACAGAGTTGGTTGTAAGGCACAACCATCTTGGAAGCTATCAAGAAGGCAGTTGGAGAGGAAACAGATAATTTATGAGCAACTGCCATCGACAGATACCCTAGCACGTAAAGATACCTCTGTTGCAGTTGTTGCTGGTGGTGAAGGTTCATATGCCGAATGTAAGGGCGACAACTTGGAGCTTGTGATTCCTTTTAATGGACCCGATGTAATAAGCTCAGTTGCTGACAGAATCCCCACATTGGTGATTCTGATATCTGGAAGACCCTTAACTGTAGAGCCAAGTCTCTTGGAAAAGATGGATGCTCTTGTTGCTGCTTGGTTGCCTGGTAGTGAAGGAGAGGGAATTGCAGATGTTATCTTTGGAGATTATAACTTCGAGGGCAAGCTACCGGTGACATGGTTTAAAAGTGTTGAACAGCTCCCATTGGATGTCGGAAGCAACTCATCCGACCCTTTATATCCTCTTGGGTTTGGATTGACATGCAATACGGAAAAAGTTGTACGCCAAACAGATTTTGATAAATGA

Protein Analysis

353

Amino Acids

38.83

Weight (kDa)

5.09

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_3 PF00933 9 - 114 5.7e-27 Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C PF01915 146 - 339 4.7e-27 Glycosyl hydrolase family 3 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 377, 906
AccB1I GGYRCC 1 cut(s) 107
AccIII TCCGGA 1 cut(s) 42
AciI CCGC 2 cut(s) 155, 207
AcsI RAATTY 1 cut(s) 394
AfaI GTAC 1 cut(s) 1038
AfiI CCNNNNNNNGG 5 cut(s) 42, 260, 350, 731, 775
AgeI ACCGGT 1 cut(s) 925
AgsI TTSAA 4 cut(s) 194, 392, 506, 950
AjnI CCWGG 4 cut(s) 103, 254, 446, 859
AleI CACNNNNGTG 1 cut(s) 776
AluBI AGCT 6 cut(s) 239, 571, 715, 750, 922, 955
AluI AGCT 6 cut(s) 239, 571, 715, 750, 922, 955
Alw26I GTCTC 1 cut(s) 824
AlwNI CAGNNNCTG 1 cut(s) 758
Aor13HI TCCGGA 1 cut(s) 42
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 848
ApoI RAATTY 1 cut(s) 394
AsiGI ACCGGT 1 cut(s) 925
AspLEI GCGC 2 cut(s) 28, 103
AspS9I GGNCC 2 cut(s) 201, 734
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 4 cut(s) 188, 686, 790, 940
AvaII GGWCC 1 cut(s) 734
BaeI ACNNNNGTAYC 4 cut(s) 428, 461, 639, 672
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 255
BbsI GAAGAC 2 cut(s) 294, 802
BbvI GCAGC 1 cut(s) 835
BccI CCATC 3 cut(s) 568, 628, 826
BciT130I CCWGG 4 cut(s) 105, 256, 448, 861
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 824
BfaI CTAG 1 cut(s) 635
BfmI CTRYAG 1 cut(s) 807
BglII AGATCT 1 cut(s) 524
BisI GCNGC 1 cut(s) 849
BlsI GCNGC 1 cut(s) 850
Bme1390I CCNGG 5 cut(s) 37, 105, 256, 448, 861
Bme18I GGWCC 1 cut(s) 734
BmgT120I GGNCC 2 cut(s) 201, 734
BmiI GGNNCC 3 cut(s) 41, 109, 736
BmrFI CCNGG 5 cut(s) 37, 105, 256, 448, 861
BmsI GCATC 5 cut(s) 58, 142, 257, 448, 826
BpiI GAAGAC 2 cut(s) 294, 802
BpuMI CCSGG 1 cut(s) 37
Bsa29I ATCGAT 1 cut(s) 317
BsaAI YACGTR 1 cut(s) 641
BsaJI CCNNGG 2 cut(s) 254, 349
BsaWI WCCGGW 2 cut(s) 42, 925
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 5 cut(s) 42, 260, 350, 731, 775
Bse118I RCCGGY 1 cut(s) 925
BseAI TCCGGA 1 cut(s) 42
BseBI CCWGG 4 cut(s) 105, 256, 448, 861
BseCI ATCGAT 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 254, 349
BseGI GGATG 4 cut(s) 409, 841, 970, 980
BseLI CCNNNNNNNGG 5 cut(s) 42, 260, 350, 731, 775
BseMII CTCAG 3 cut(s) 339, 467, 765
BseXI GCAGC 1 cut(s) 835
BshFI GGCC 1 cut(s) 203
BshNI GGYRCC 1 cut(s) 107
BshTI ACCGGT 1 cut(s) 925
BshVI ATCGAT 1 cut(s) 317
BsiSI CCGG 3 cut(s) 37, 43, 926
BslFI GGGAC 2 cut(s) 276, 495
BslI CCNNNNNNNGG 5 cut(s) 42, 260, 350, 731, 775
BsmAI GTCTC 1 cut(s) 824
BsmFI GGGAC 2 cut(s) 276, 495
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 255
Bsp13I TCCGGA 1 cut(s) 42
Bsp143I GATC 1 cut(s) 524
BspACI CCGC 2 cut(s) 155, 207
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 3 cut(s) 338, 468, 764
BspDI ATCGAT 1 cut(s) 317
BspEI TCCGGA 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 41, 109, 736
BspT107I GGYRCC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 925
BssAI RCCGGY 1 cut(s) 925
BssECI CCNNGG 2 cut(s) 254, 349
BssMI GATC 1 cut(s) 524
BssT1I CCWWGG 1 cut(s) 349
Bst2UI CCWGG 4 cut(s) 105, 256, 448, 861
Bst4CI ACNGT 2 cut(s) 128, 808
BstAPI GCANNNNNTGC 1 cut(s) 665
BstBAI YACGTR 1 cut(s) 641
BstC8I GCNNGC 3 cut(s) 205, 332, 920
BstDEI CTNAG 3 cut(s) 325, 476, 751
BstF5I GGATG 4 cut(s) 409, 841, 970, 980
BstHHI GCGC 2 cut(s) 28, 103
BstKTI GATC 1 cut(s) 527
BstMAI GTCTC 1 cut(s) 824
BstMBI GATC 1 cut(s) 524
BstMWI GCNNNNNNNGC 5 cut(s) 107, 161, 340, 665, 845
BstNI CCWGG 4 cut(s) 105, 256, 448, 861
BstNSI RCATGY 1 cut(s) 1020
BstSCI CCNGG 5 cut(s) 35, 103, 254, 446, 859
BstSFI CTRYAG 1 cut(s) 807
BstV1I GCAGC 1 cut(s) 835
BstV2I GAAGAC 2 cut(s) 294, 802
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
Bsu15I ATCGAT 1 cut(s) 317
BsuRI GGCC 1 cut(s) 203
BsuTUI ATCGAT 1 cut(s) 317
BtsCI GGATG 4 cut(s) 409, 841, 970, 980
BtsIMutI CAGTG 2 cut(s) 133, 291
Cac8I GCNNGC 3 cut(s) 205, 332, 920
CaiI CAGNNNCTG 1 cut(s) 758
CfoI GCGC 2 cut(s) 28, 103
Cfr10I RCCGGY 1 cut(s) 925
Cfr13I GGNCC 2 cut(s) 201, 734
ClaI ATCGAT 1 cut(s) 317
Csp6I GTAC 1 cut(s) 1037
CspAI ACCGGT 1 cut(s) 925
CviAII CATG 5 cut(s) 77, 356, 428, 933, 1017
CviQI GTAC 1 cut(s) 1037
DdeI CTNAG 3 cut(s) 325, 476, 751
DpnI GATC 1 cut(s) 526
DpnII GATC 1 cut(s) 524
DraI TTTAAA 1 cut(s) 940
Eco130I CCWWGG 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 255
Eco32I GATATC 1 cut(s) 789
Eco47I GGWCC 1 cut(s) 734
EcoRII CCWGG 4 cut(s) 103, 254, 446, 859
EcoRV GATATC 1 cut(s) 789
EcoT14I CCWWGG 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 5 cut(s) 80, 359, 431, 936, 1020
FaqI GGGAC 2 cut(s) 276, 495
FatI CATG 5 cut(s) 76, 355, 427, 932, 1016
FauI CCCGC 1 cut(s) 200
FauNDI CATATG 1 cut(s) 685
Fnu4HI GCNGC 1 cut(s) 849
FokI GGATG 4 cut(s) 416, 848, 967, 977
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 849
FspBI CTAG 1 cut(s) 635
GlaI GCGC 2 cut(s) 27, 102
GluI GCNGC 1 cut(s) 849
HaeIII GGCC 1 cut(s) 203
HapII CCGG 3 cut(s) 37, 43, 926
HhaI GCGC 2 cut(s) 28, 103
Hin1II CATG 5 cut(s) 80, 359, 431, 936, 1020
Hin6I GCGC 2 cut(s) 26, 101
HinP1I GCGC 2 cut(s) 26, 101
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 7 cut(s) 46, 90, 211, 415, 721, 765, 781
HpaII CCGG 3 cut(s) 37, 43, 926
HphI GGTGA 4 cut(s) 188, 686, 790, 940
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 5 cut(s) 18, 520, 786, 971, 985
Hpy188III TCNNGA 4 cut(s) 43, 191, 576, 792
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 3 cut(s) 573, 671, 863
HpyCH4III ACNGT 2 cut(s) 128, 808
HpyCH4IV ACGT 2 cut(s) 508, 640
HpyCH4V TGCA 5 cut(s) 246, 334, 659, 884, 1020
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 161, 340, 665, 845
HpyF3I CTNAG 3 cut(s) 325, 476, 751
HpySE526I ACGT 2 cut(s) 508, 640
Hsp92II CATG 5 cut(s) 80, 359, 431, 936, 1020
HspAI GCGC 2 cut(s) 26, 101
Kpn2I TCCGGA 1 cut(s) 42
Kzo9I GATC 1 cut(s) 524
LmnI GCTCC 4 cut(s) 45, 232, 712, 960
Lsp1109I GCAGC 1 cut(s) 835
LweI GCATC 5 cut(s) 58, 142, 257, 448, 826
MaeI CTAG 1 cut(s) 635
MaeII ACGT 2 cut(s) 508, 640
MaeIII GTNAC 2 cut(s) 278, 928
MalI GATC 1 cut(s) 526
MboI GATC 1 cut(s) 524
MboII GAAGA 3 cut(s) 299, 396, 807
MflI RGATCY 1 cut(s) 524
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 4 cut(s) 297, 394, 603, 879
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 3 cut(s) 567, 949, 1008
MnlI CCTC 8 cut(s) 12, 132, 172, 585, 661, 868, 907, 1008
MroI TCCGGA 1 cut(s) 42
MseI TTAA 3 cut(s) 729, 803, 939
MslI CAYNNNNRTG 2 cut(s) 360, 776
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 3 cut(s) 37, 43, 926
MspR9I CCNGG 5 cut(s) 37, 105, 256, 448, 861
MvaI CCWGG 4 cut(s) 105, 256, 448, 861
MwoI GCNNNNNNNGC 5 cut(s) 107, 161, 340, 665, 845
NciI CCSGG 1 cut(s) 37
NdeI CATATG 1 cut(s) 685
NdeII GATC 1 cut(s) 524
NlaIII CATG 5 cut(s) 80, 359, 431, 936, 1020
NlaIV GGNNCC 3 cut(s) 41, 109, 736
NmuCI GTSAC 1 cut(s) 928
NspI RCATGY 1 cut(s) 1020
OliI CACNNNNGTG 1 cut(s) 776
PfeI GAWTC 6 cut(s) 46, 211, 415, 721, 765, 781
PfoI TCCNGGA 1 cut(s) 446
PinAI ACCGGT 1 cut(s) 925
PkrI GCNGC 1 cut(s) 850
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
Ppu21I YACGTR 1 cut(s) 641
PsiI TTATAA 2 cut(s) 377, 906
Psp6I CCWGG 4 cut(s) 103, 254, 446, 859
PspGI CCWGG 4 cut(s) 103, 254, 446, 859
PspN4I GGNNCC 3 cut(s) 41, 109, 736
PspPI GGNCC 2 cut(s) 201, 734
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 1 cut(s) 524
RsaI GTAC 1 cut(s) 1038
RsaNI GTAC 1 cut(s) 1037
RseI CAYNNNNRTG 2 cut(s) 360, 776
SaqAI TTAA 3 cut(s) 729, 803, 939
SatI GCNGC 1 cut(s) 849
Sau3AI GATC 1 cut(s) 524
Sau96I GGNCC 2 cut(s) 201, 734
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 5 cut(s) 37, 105, 256, 448, 861
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 5 cut(s) 58, 142, 257, 448, 826
SfcI CTRYAG 1 cut(s) 807
SinI GGWCC 1 cut(s) 734
SmiMI CAYNNNNRTG 2 cut(s) 360, 776
Sse9I AATT 4 cut(s) 297, 394, 603, 879
SsiI CCGC 2 cut(s) 155, 207
SspMI CTAG 1 cut(s) 635
StyD4I CCNGG 5 cut(s) 35, 103, 254, 446, 859
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 2 cut(s) 128, 808
TaiI ACGT 2 cut(s) 511, 643
TaqI TCGA 3 cut(s) 317, 623, 912
TasI AATT 4 cut(s) 297, 394, 603, 879
TfiI GAWTC 6 cut(s) 46, 211, 415, 721, 765, 781
Tru1I TTAA 3 cut(s) 729, 803, 939
Tru9I TTAA 3 cut(s) 729, 803, 939
TscAI CASTG 2 cut(s) 133, 298
TseFI GTSAC 1 cut(s) 928
TseI GCWGC 1 cut(s) 848
Tsp45I GTSAC 1 cut(s) 928
TspDTI ATGAA 3 cut(s) 65, 372, 672
TspGWI ACGGA 1 cut(s) 1040
TspRI CASTG 2 cut(s) 133, 298
VpaK11BI GGWCC 1 cut(s) 734
XapI RAATTY 1 cut(s) 394
XceI RCATGY 1 cut(s) 1020
XspI CTAG 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.