Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Forward (+)

4890982 .. 4891446

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00336970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCTTGGCTTGCAGGGAGTGTCTTGAGCGGCGGTGGGAGTGTGCCATCAGAAGAAGCTTCTGCAGAAACTTGGGTTACAATGGTGAATGATTTTCAAAAGGGTTCTCTATCAACTCGCCTCTGTATTCCAATGATTTATGGTATTAATGCTGTTCATGGCCACAATAATGTCTACAAGGCAACAATCTTTCCCCACAATGTTGGCCTCGGAGTTACCAGGCAAGTACTAGTGCTATATCCAATCCAGAATGTTACTAGTGGGACCCTGAACTTGTTTAAGGAGATTGGAGCTGCAACTGCACTTGAAGTTAGAGCCACAGGCATTCCATATGTCTTGCACCATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

116

Amino Acids

12.35

Weight (kDa)

6.96

Isoelectric Point (pI)

16.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	6 - 109	4.5e-08	Glycosyl hydrolase family 3 N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	2 cut(s)	30, 33
AcoI	YGGCCR	1 cut(s)	160
AfaI	GTAC	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	98, 308
AhlI	ACTAGT	2 cut(s)	229, 257
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	2 cut(s)	59, 293
AluI	AGCT	2 cut(s)	59, 293
AoxI	GGCC	2 cut(s)	160, 205
ApeKI	GCWGC	1 cut(s)	293
AseI	ATTAAT	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	220
BcuI	ACTAGT	2 cut(s)	229, 257
BfaI	CTAG	2 cut(s)	230, 258
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	2 cut(s)	31, 294
BlsI	GCNGC	2 cut(s)	32, 295
BmcAI	AGTACT	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	265, 266
BmrFI	CCNGG	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	280
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	162, 207
BslFI	GGGAC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	324
BsnI	GGCC	2 cut(s)	162, 207
BspACI	CCGC	2 cut(s)	30, 33
BspANI	GGCC	2 cut(s)	162, 207
BspLI	GGNNCC	2 cut(s)	265, 266
BspMAI	CTGCAG	1 cut(s)	67
BsrBI	CCGCTC	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 299
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	162, 207
Cac8I	GCNNGC	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	2 cut(s)	158, 344
CviJI	RGCY	7 cut(s)	5, 10, 59, 162, 207, 293, 317
CviKI_1	RGCY	7 cut(s)	5, 10, 59, 162, 207, 293, 317
CviQI	GTAC	1 cut(s)	227
EaeI	YGGCCR	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	349
FaeI	CATG	2 cut(s)	161, 347
FaiI	YATR	7 cut(s)	141, 159, 238, 331, 333, 345, 349
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	2 cut(s)	157, 343
FauNDI	CATATG	1 cut(s)	331
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	31, 294
Fsp4HI	GCNGC	2 cut(s)	31, 294
FspBI	CTAG	2 cut(s)	230, 258
GluI	GCNGC	2 cut(s)	31, 294
HaeIII	GGCC	2 cut(s)	162, 207
Hin1II	CATG	2 cut(s)	161, 347
HindIII	AAGCTT	1 cut(s)	57
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	52, 212
Hpy188III	TCNNGA	2 cut(s)	25, 247
Hpy8I	GTNNAC	1 cut(s)	175
HpyCH4V	TGCA	6 cut(s)	14, 65, 296, 302, 340, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 299
Hsp92II	CATG	2 cut(s)	161, 347
KflI	GGGWCCC	1 cut(s)	264
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	5 cut(s)	205, 232, 260, 281, 306
Lsp1109I	GCAGC	1 cut(s)	280
MaeI	CTAG	2 cut(s)	230, 258
MaeIII	GTNAC	3 cut(s)	76, 214, 253
MbiI	CCGCTC	1 cut(s)	30
MboII	GAAGA	1 cut(s)	65
MlsI	TGGCCA	1 cut(s)	162
MluNI	TGGCCA	1 cut(s)	162
MnlI	CCTC	2 cut(s)	131, 218
Mox20I	TGGCCA	1 cut(s)	162
Mph1103I	ATGCAT	1 cut(s)	349
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	2 cut(s)	147, 279
MslI	CAYNNNNRTG	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	220
Mva1269I	GAATGC	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	11, 299
NdeI	CATATG	1 cut(s)	331
NlaIII	CATG	2 cut(s)	161, 347
NlaIV	GGNNCC	2 cut(s)	265, 266
NsiI	ATGCAT	1 cut(s)	349
PctI	GAATGC	1 cut(s)	324
PkrI	GCNGC	2 cut(s)	32, 295
PpuMI	RGGWCCY	1 cut(s)	264
PshBI	ATTAAT	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	265, 266
PspPI	GGNCC	1 cut(s)	264
PspPPI	RGGWCCY	1 cut(s)	264
PstI	CTGCAG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	147, 279
SatI	GCNGC	2 cut(s)	31, 294
Sau96I	GGNCC	1 cut(s)	264
ScaI	AGTACT	1 cut(s)	228
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	2 cut(s)	61, 295
SfcI	CTRYAG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
SpeI	ACTAGT	2 cut(s)	229, 257
SsiI	CCGC	2 cut(s)	30, 33
SspMI	CTAG	2 cut(s)	230, 258
StyD4I	CCNGG	1 cut(s)	218
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	1 cut(s)	33
Tru1I	TTAA	2 cut(s)	147, 279
Tru9I	TTAA	2 cut(s)	147, 279
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	264
VspI	ATTAAT	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	2 cut(s)	230, 258
ZrmI	AGTACT	1 cut(s)	228
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.