Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Forward (+)

88776957 .. 88777922

Gene Structure 966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG519500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTTTTGTTTGTGCAACTGATGATGACTATATATATATTCATGTATGTGCTAGGGAGTGTAATCAGTGGTGCAGGAAGTGGGCCGTTTAGGAAGGCTTTATCGGCGGACTGGGCCGATATGGTTGACGGGTTTCAGAGGTGTGCGCTGGAAACCCGGCTCCGGATTCCATTGATATATGGGATTGATGCTGTTCATGGGAACAATGGAGTCTTTGGTGCGCCTGGTGCCACTATATTTCCTCACAGTGTTGGTCTTGGGGCTACCAGAGATGCGGATTTGGCTCAAAGGATTGGTGAGGCAACTGCTCTTGAAGTCAGGGCCAGCGGGATTCACTACACTTTTGCTCCCTGTGTAGCTGTTAGTCATTGTGAATGTAATCAGTATGCAGAGAGCCCAGGTGGGGACGATGCTACGAGAGTTACAGCGAAGACACTGAAATTGTTAGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

151

Amino Acids

16.14

Weight (kDa)

6.04

Isoelectric Point (pI)

16.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	16 - 127	2.5e-19	Glycosyl hydrolase family 3 N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	3 cut(s)	107, 275, 327
AfiI	CCNNNNNNNGG	2 cut(s)	162, 403
AgsI	TTSAA	1 cut(s)	314
AjnI	CCWGG	2 cut(s)	223, 397
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Aor13HI	TCCGGA	1 cut(s)	162
AoxI	GGCC	3 cut(s)	83, 114, 321
AspLEI	GCGC	2 cut(s)	148, 223
AspS9I	GGNCC	3 cut(s)	83, 114, 321
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	437
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	2 cut(s)	225, 399
BcnI	CCSGG	1 cut(s)	157
BfaI	CTAG	1 cut(s)	53
Bme1390I	CCNGG	3 cut(s)	157, 225, 399
BmgT120I	GGNCC	3 cut(s)	83, 114, 321
BmiI	GGNNCC	2 cut(s)	161, 229
BmrFI	CCNGG	3 cut(s)	157, 225, 399
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	3 cut(s)	178, 262, 400
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	397
BsaWI	WCCGGW	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 403
Bse1I	ACTGG	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	2 cut(s)	225, 399
BseDI	CCNNGG	1 cut(s)	397
BseLI	CCNNNNNNNGG	2 cut(s)	162, 403
BseNI	ACTGG	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	3 cut(s)	85, 116, 323
BshNI	GGYRCC	1 cut(s)	227
BsiSI	CCGG	2 cut(s)	157, 163
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	2 cut(s)	162, 403
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	3 cut(s)	85, 116, 323
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp13I	TCCGGA	1 cut(s)	162
BspACI	CCGC	3 cut(s)	107, 275, 327
BspANI	GGCC	3 cut(s)	85, 116, 323
BspEI	TCCGGA	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	161, 229
BspT107I	GGYRCC	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	397
Bst2UI	CCWGG	2 cut(s)	225, 399
Bst4CI	ACNGT	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	325
BstHHI	GCGC	2 cut(s)	148, 223
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 113, 227, 281
BstNI	CCWGG	2 cut(s)	225, 399
BstSCI	CCNGG	3 cut(s)	155, 223, 397
BstV2I	GAAGAC	1 cut(s)	437
BsuRI	GGCC	3 cut(s)	85, 116, 323
BtsIMutI	CAGTG	3 cut(s)	73, 253, 434
Cac8I	GCNNGC	1 cut(s)	325
CfoI	GCGC	2 cut(s)	148, 223
Cfr13I	GGNCC	3 cut(s)	83, 114, 321
CviAII	CATG	2 cut(s)	43, 197
CviJI	RGCY	9 cut(s)	85, 98, 116, 160, 263, 284, 323, 359, 396
CviKI_1	RGCY	9 cut(s)	85, 98, 116, 160, 263, 284, 323, 359, 396
EciI	GGCGGA	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	398
EcoRII	CCWGG	2 cut(s)	223, 397
EcoT38I	GRGCYC	1 cut(s)	398
FaeI	CATG	2 cut(s)	46, 200
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	2 cut(s)	42, 196
FauI	CCCGC	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	398
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	2 cut(s)	147, 222
HaeIII	GGCC	3 cut(s)	85, 116, 323
HapII	CCGG	2 cut(s)	157, 163
HhaI	GCGC	2 cut(s)	148, 223
Hin1II	CATG	2 cut(s)	46, 200
Hin6I	GCGC	2 cut(s)	146, 221
HinP1I	GCGC	2 cut(s)	146, 221
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	3 cut(s)	166, 210, 331
HpaII	CCGG	2 cut(s)	157, 163
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	2 cut(s)	163, 311
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4V	TGCA	3 cut(s)	16, 74, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 113, 227, 281
Hsp92II	CATG	2 cut(s)	46, 200
HspAI	GCGC	2 cut(s)	146, 221
Kpn2I	TCCGGA	1 cut(s)	162
LmnI	GCTCC	2 cut(s)	165, 352
LweI	GCATC	3 cut(s)	178, 262, 400
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	421
MboII	GAAGA	1 cut(s)	442
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	219
MnlI	CCTC	3 cut(s)	132, 252, 292
MroI	TCCGGA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	327
MspI	CCGG	2 cut(s)	157, 163
MspR9I	CCNGG	3 cut(s)	157, 225, 399
MvaI	CCWGG	2 cut(s)	225, 399
MwoI	GCNNNNNNNGC	4 cut(s)	104, 113, 227, 281
NciI	CCSGG	1 cut(s)	157
NlaIII	CATG	2 cut(s)	46, 200
NlaIV	GGNNCC	2 cut(s)	161, 229
PfeI	GAWTC	2 cut(s)	166, 331
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Psp6I	CCWGG	2 cut(s)	223, 397
PspGI	CCWGG	2 cut(s)	223, 397
PspN4I	GGNNCC	2 cut(s)	161, 229
PspPI	GGNCC	3 cut(s)	83, 114, 321
RseI	CAYNNNNRTG	1 cut(s)	47
Sau96I	GGNCC	3 cut(s)	83, 114, 321
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	3 cut(s)	157, 225, 399
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	3 cut(s)	143, 361, 403
SfaNI	GCATC	3 cut(s)	178, 262, 400
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	440
SsiI	CCGC	3 cut(s)	107, 275, 327
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	3 cut(s)	155, 223, 397
TaaI	ACNGT	1 cut(s)	248
TasI	AATT	1 cut(s)	440
TfiI	GAWTC	2 cut(s)	166, 331
TscAI	CASTG	3 cut(s)	73, 253, 441
TspDTI	ATGAA	2 cut(s)	31, 185
TspRI	CASTG	3 cut(s)	73, 253, 441
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.