Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

923818 .. 925278

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G007100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCCAGACTTCCCGTCTTCTTGGCGGGGCTGCTTCTCTTATCTTTCTGCAAAACTTGGGTTAAACTGGTGAATGATTTTCAAAAGGCTTCTTTATCAACTCGGCTTGGAATTCCATTGATTTATGGTATTGATGCTGTTCATGGCCACAACAATGTCTACAAGGCAACAATCTTTCCCCACAATGTTGGCCTTGGAGCTACCAGTAAAATGATCTGCAGCAGGTCCGGAGACGTAGGCACAATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0044042 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

84

Amino Acids

8.92

Weight (kDa)

9.7

Isoelectric Point (pI)

20.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	159
AccIII	TCCGGA	1 cut(s)	227
AciI	CCGC	1 cut(s)	26
AcoI	YGGCCR	2 cut(s)	3, 145
AcsI	RAATTY	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	83
AhdI	GACNNNNNGTC	1 cut(s)	14
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
Alw26I	GTCTC	1 cut(s)	225
Aor13HI	TCCGGA	1 cut(s)	227
AoxI	GGCC	3 cut(s)	3, 145, 190
ApeKI	GCWGC	2 cut(s)	31, 219
ApoI	RAATTY	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	225
BalI	TGGCCA	2 cut(s)	5, 147
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	18, 231
BcoDI	GTCTC	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	217
BfuAI	ACCTGC	1 cut(s)	213
BisI	GCNGC	2 cut(s)	32, 220
BlsI	GCNGC	2 cut(s)	33, 221
Bme18I	GGWCC	1 cut(s)	225
BmeRI	GACNNNNNGTC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	225
BmsI	GCATC	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	193
BsaWI	WCCGGW	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	72, 204
BseAI	TCCGGA	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	193
BseNI	ACTGG	2 cut(s)	72, 204
BseXI	GCAGC	2 cut(s)	18, 231
BshFI	GGCC	3 cut(s)	5, 147, 192
BsiSI	CCGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	225
BsmBI	CGTCTC	1 cut(s)	225
BsnI	GGCC	3 cut(s)	5, 147, 192
Bsp13I	TCCGGA	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	3 cut(s)	5, 147, 192
BspEI	TCCGGA	1 cut(s)	227
BspMAI	CTGCAG	1 cut(s)	221
BspMI	ACCTGC	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	72, 204
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstSFI	CTRYAG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	18, 231
BstV2I	GAAGAC	1 cut(s)	10
BstXI	CCANNNNNNTGG	1 cut(s)	188
BsuRI	GGCC	3 cut(s)	5, 147, 192
BveI	ACCTGC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	225
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	8 cut(s)	5, 31, 89, 106, 147, 192, 200, 249
CviKI_1	RGCY	8 cut(s)	5, 31, 89, 106, 147, 192, 200, 249
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
DriI	GACNNNNNGTC	1 cut(s)	14
EaeI	YGGCCR	2 cut(s)	3, 145
Eam1105I	GACNNNNNGTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
Esp3I	CGTCTC	1 cut(s)	225
FaeI	CATG	1 cut(s)	146
FaiI	YATR	2 cut(s)	126, 144
FatI	CATG	1 cut(s)	142
FauI	CCCGC	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	32, 220
Fsp4HI	GCNGC	2 cut(s)	32, 220
GluI	GCNGC	2 cut(s)	32, 220
HaeIII	GGCC	3 cut(s)	5, 147, 192
HapII	CCGG	1 cut(s)	228
Hin1II	CATG	1 cut(s)	146
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	228
Hpy8I	GTNNAC	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	2 cut(s)	51, 219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	146
Kpn2I	TCCGGA	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	5 cut(s)	19, 53, 208, 217, 241
Lsp1109I	GCAGC	2 cut(s)	18, 231
LweI	GCATC	1 cut(s)	124
MaeII	ACGT	1 cut(s)	234
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	1 cut(s)	10
MfeI	CAATTG	1 cut(s)	243
MlsI	TGGCCA	2 cut(s)	5, 147
MluCI	AATT	2 cut(s)	111, 243
MluNI	TGGCCA	2 cut(s)	5, 147
Mox20I	TGGCCA	2 cut(s)	5, 147
MroI	TCCGGA	1 cut(s)	227
MscI	TGGCCA	2 cut(s)	5, 147
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	153
Msp20I	TGGCCA	2 cut(s)	5, 147
MspI	CCGG	1 cut(s)	228
MunI	CAATTG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	246
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	1 cut(s)	146
NmeAIII	GCCGAG	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	33, 221
PspPI	GGNCC	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	2 cut(s)	32, 220
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	225
SetI	ASST	3 cut(s)	202, 227, 237
SfaNI	GCATC	1 cut(s)	124
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	111, 243
SsiI	CCGC	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	193
TaiI	ACGT	1 cut(s)	237
TasI	AATT	2 cut(s)	111, 243
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseI	GCWGC	2 cut(s)	31, 219
TspDTI	ATGAA	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	111
XmiI	GTMKAC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.