Rw1G018240

Lysosomal beta glucosidase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
40054999 .. 40059351
4353 bp
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UTR
Exon/CDS
Intron
Rw1G018240.1

Sequence Viewer

Length: 327 bp
ATGGATCTAGAAAGAGGGAAATCGGGAACCAGGGGAACAAATCAGGAAAGGGGAAAGAGAGGCACTGAGCAGCGGATCGGAGGCAAACTCAGGGCAAAAATGCCCAAGACAGCAGGAAGTGTGCTTAGTGGTGGTGGGAGGGTGCCAGCTCCCAAAGCACCAGCTGAAACATGGGTCAATCTTGTCAATGTAATCCAAAAGGGAACTCTATTTGGGATTCCTATAATTTATGGGATTGACGCTATCCATGACCACAACAATGTCTATAATGCTACCATAATGTTGGATTGGGAGCCACCAGACAAGTCTTCCACTTTGGCCAAATGA

Protein Analysis

108

Amino Acids

11.65

Weight (kDa)

9.91

Isoelectric Point (pI)

28.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AciI CCGC 1 cut(s) 73
AclWI GGATC 2 cut(s) 12, 83
AcoI YGGCCR 1 cut(s) 318
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 2 cut(s) 149, 164
AluI AGCT 2 cut(s) 149, 164
AlwI GGATC 2 cut(s) 12, 83
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 320
BanI GGYRCC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 31
BfaI CTAG 1 cut(s) 8
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 31
BmiI GGNNCC 3 cut(s) 28, 144, 294
BmrFI CCNGG 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 300
BplI GAGNNNNNCTC 2 cut(s) 72, 104
BsaJI CCNNGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 57, 103
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 1 cut(s) 320
BshNI GGYRCC 1 cut(s) 142
BsnI GGCC 1 cut(s) 320
Bsp143I GATC 2 cut(s) 4, 75
BspACI CCGC 1 cut(s) 73
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 2 cut(s) 58, 102
BspLI GGNNCC 3 cut(s) 28, 144, 294
BspPI GGATC 2 cut(s) 12, 83
BspT107I GGYRCC 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 2 cut(s) 4, 75
Bst2UI CCWGG 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 3 cut(s) 66, 89, 125
BstKTI GATC 2 cut(s) 7, 78
BstMBI GATC 2 cut(s) 4, 75
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 283
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 147
CseI GACGC 1 cut(s) 248
CviAII CATG 2 cut(s) 171, 248
CviJI RGCY 4 cut(s) 149, 164, 295, 320
CviKI_1 RGCY 4 cut(s) 149, 164, 295, 320
DdeI CTNAG 3 cut(s) 66, 89, 125
DpnI GATC 2 cut(s) 6, 77
DpnII GATC 2 cut(s) 4, 75
EaeI YGGCCR 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 29
FaeI CATG 2 cut(s) 174, 251
FaiI YATR 6 cut(s) 172, 224, 231, 249, 267, 278
FatI CATG 2 cut(s) 170, 247
Fnu4HI GCNGC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 1 cut(s) 8
GluI GCNGC 1 cut(s) 71
HaeIII GGCC 1 cut(s) 320
HgaI GACGC 1 cut(s) 248
Hin1II CATG 2 cut(s) 174, 251
HinfI GANTC 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 3 cut(s) 8, 24, 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 3 cut(s) 66, 89, 125
Hsp92II CATG 2 cut(s) 174, 251
Kzo9I GATC 2 cut(s) 4, 75
LmnI GCTCC 2 cut(s) 154, 292
LpnPI CCDG 8 cut(s) 16, 29, 43, 76, 99, 159, 174, 312
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 1 cut(s) 8
MalI GATC 2 cut(s) 6, 77
MboI GATC 2 cut(s) 4, 75
MboII GAAGA 1 cut(s) 300
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 1 cut(s) 225
MluNI TGGCCA 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 4 cut(s) 8, 53, 74, 132
Mox20I TGGCCA 1 cut(s) 320
MscI TGGCCA 1 cut(s) 320
MslI CAYNNNNRTG 1 cut(s) 258
Msp20I TGGCCA 1 cut(s) 320
MspA1I CMGCKG 2 cut(s) 73, 164
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 2 cut(s) 4, 75
NlaIII CATG 2 cut(s) 174, 251
NlaIV GGNNCC 3 cut(s) 28, 144, 294
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 3 cut(s) 28, 144, 294
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 258
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 2 cut(s) 4, 75
ScrFI CCNGG 1 cut(s) 31
SetI ASST 2 cut(s) 151, 166
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 1 cut(s) 225
SsiI CCGC 1 cut(s) 73
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 29
TasI AATT 1 cut(s) 225
TfiI GAWTC 1 cut(s) 217
TscAI CASTG 1 cut(s) 70
TseI GCWGC 1 cut(s) 70
TspRI CASTG 1 cut(s) 70
XbaI TCTAGA 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 168
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.