Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

55337763 .. 55338293

Gene Structure 531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG330500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCTCATAACCTATTTTGCTCAACATGCTGCAGGTATCACAATTCTAACTGCCATAAGGAACACAGTTGCACCTGAAACCAAAGTAGTGTACAAGGAGAATCCTGATGCCAAGTTTGTGAAGTCAAATAACTTCTCCCATGCCATCGTTATGGTAGGAGAGCCACCCTATGCCGAGGGAGCTGGTGACAACCTAAACTTAACAATCCCTAAATCTGGCCAAAGAGTCATCAGAAATGTTTGCGGTGCAGCAAAATGTGTTGTTTGCCTCATCACCGGCCGTCCTGTAGTGATCAAACCATATCTTTCCATCATAGATACTCTTGTTGCAGCTTGGCTCCCAGGGACTGAAGGCCAAGGAGTTGCTGATGTTTTGTTTGGAGACTATGGCTTCAATGGCAAGCTTCCTCGCACCTGGTTCAGAACCGCTCATCAGCTGCCTATGAATGTTGGAGATTCACATTATGATCCTCTCTCTTCCCTTCTGGATATGGCCTCACTACACAACCCACCAATGCCAACTAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0044042 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

176

Amino Acids

19.1

Weight (kDa)

8.79

Isoelectric Point (pI)

22.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3_C	PF01915	13 - 149	6.3e-25	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	23
AccBSI	CCGCTC	1 cut(s)	428
AciI	CCGC	2 cut(s)	243, 426
AclWI	GGATC	1 cut(s)	461
AcoI	YGGCCR	2 cut(s)	217, 277
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	394
AjnI	CCWGG	2 cut(s)	340, 413
AluBI	AGCT	4 cut(s)	182, 332, 403, 436
AluI	AGCT	4 cut(s)	182, 332, 403, 436
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	461
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	4 cut(s)	217, 277, 352, 492
ApeKI	GCWGC	4 cut(s)	29, 248, 329, 436
AsuHPI	GGTGA	2 cut(s)	197, 265
BaeI	ACNNNNGTAYC	2 cut(s)	309, 342
BalI	TGGCCA	1 cut(s)	219
BbvI	GCAGC	4 cut(s)	16, 260, 341, 423
BccI	CCATC	2 cut(s)	152, 317
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	2 cut(s)	342, 415
BclI	TGATCA	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	2 cut(s)	30, 285
BfuAI	ACCTGC	1 cut(s)	23
BisI	GCNGC	4 cut(s)	30, 249, 330, 437
BlsI	GCNGC	4 cut(s)	31, 250, 331, 438
Bme1390I	CCNGG	2 cut(s)	342, 415
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	2 cut(s)	342, 415
BmsI	GCATC	1 cut(s)	97
BsaJI	CCNNGG	4 cut(s)	174, 340, 341, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	275
BseBI	CCWGG	2 cut(s)	342, 415
BseDI	CCNNGG	4 cut(s)	174, 340, 341, 355
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseX3I	CGGCCG	1 cut(s)	277
BseXI	GCAGC	4 cut(s)	16, 260, 341, 423
BsgI	GTGCAG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	4 cut(s)	219, 279, 354, 494
BsiEI	CGRYCG	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	4 cut(s)	219, 279, 354, 494
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	291, 466
BspACI	CCGC	2 cut(s)	243, 426
BspANI	GGCC	4 cut(s)	219, 279, 354, 494
BspLI	GGNNCC	1 cut(s)	338
BspMAI	CTGCAG	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	461
BsrBI	CCGCTC	1 cut(s)	428
BsrFI	RCCGGY	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	90
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	4 cut(s)	174, 340, 341, 355
BssMI	GATC	2 cut(s)	291, 466
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	2 cut(s)	342, 415
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	481
BstAUI	TGTACA	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	401
BstKTI	GATC	2 cut(s)	294, 469
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	2 cut(s)	291, 466
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 179, 396
BstNI	CCWGG	2 cut(s)	342, 415
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	340, 413
BstSFI	CTRYAG	2 cut(s)	30, 285
BstV1I	GCAGC	4 cut(s)	16, 260, 341, 423
BstXI	CCANNNNNNTGG	1 cut(s)	151
BstZI	CGGCCG	1 cut(s)	277
BsuRI	GGCC	4 cut(s)	219, 279, 354, 494
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	401
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	275
CsiI	ACCWGGT	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	2 cut(s)	26, 140
CviQI	GTAC	1 cut(s)	91
DpnI	GATC	2 cut(s)	293, 468
DpnII	GATC	2 cut(s)	291, 466
EaeI	YGGCCR	2 cut(s)	217, 277
EagI	CGGCCG	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	481
EarI	CTCTTC	1 cut(s)	481
EclXI	CGGCCG	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	355
Eco52I	CGGCCG	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	369
EcoRII	CCWGG	2 cut(s)	340, 413
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	2 cut(s)	29, 143
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	2 cut(s)	25, 139
FbaI	TGATCA	1 cut(s)	291
Fnu4HI	GCNGC	4 cut(s)	30, 249, 330, 437
Fsp4HI	GCNGC	4 cut(s)	30, 249, 330, 437
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	4 cut(s)	30, 249, 330, 437
HaeIII	GGCC	4 cut(s)	219, 279, 354, 494
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	2 cut(s)	29, 143
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	3 cut(s)	100, 225, 455
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	197, 265
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	233, 422
Hpy188III	TCNNGA	2 cut(s)	104, 485
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	2 cut(s)	344, 491
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	4 cut(s)	32, 71, 248, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 179, 396
Hsp92II	CATG	2 cut(s)	29, 143
Ksp22I	TGATCA	1 cut(s)	291
Kzo9I	GATC	2 cut(s)	291, 466
LmnI	GCTCC	2 cut(s)	179, 342
Lsp1109I	GCAGC	4 cut(s)	16, 260, 341, 423
LweI	GCATC	1 cut(s)	97
MabI	ACCWGGT	1 cut(s)	413
MaeI	CTAG	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	2 cut(s)	293, 468
MbiI	CCGCTC	1 cut(s)	428
MboI	GATC	2 cut(s)	291, 466
MboII	GAAGA	1 cut(s)	468
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	1 cut(s)	42
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	1 cut(s)	430
MnlI	CCTC	5 cut(s)	169, 278, 417, 480, 505
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	1 cut(s)	200
MslI	CAYNNNNRTG	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	436
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	342, 415
MvaI	CCWGG	2 cut(s)	342, 415
MwoI	GCNNNNNNNGC	3 cut(s)	26, 179, 396
NdeII	GATC	2 cut(s)	291, 466
NlaIII	CATG	2 cut(s)	29, 143
NlaIV	GGNNCC	1 cut(s)	338
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	29
PasI	CCCWGGG	1 cut(s)	341
PfeI	GAWTC	2 cut(s)	100, 455
PkrI	GCNGC	4 cut(s)	31, 250, 331, 438
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Psp6I	CCWGG	2 cut(s)	340, 413
PspGI	CCWGG	2 cut(s)	340, 413
PspN4I	GGNNCC	1 cut(s)	338
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	436
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	4 cut(s)	30, 249, 330, 437
Sau3AI	GATC	2 cut(s)	291, 466
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	2 cut(s)	342, 415
SetI	ASST	9 cut(s)	14, 37, 76, 184, 195, 334, 405, 416, 438
SexAI	ACCWGGT	1 cut(s)	413
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	2 cut(s)	30, 285
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	42
SsiI	CCGC	2 cut(s)	243, 426
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	2 cut(s)	340, 413
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	67
TasI	AATT	1 cut(s)	42
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	100, 455
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	4 cut(s)	29, 248, 329, 436
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	458
XceI	RCATGY	1 cut(s)	29
XspI	CTAG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.