Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

55338468 .. 55340585

Gene Structure 2118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG330600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCTAGAATTCTCATCTTCTTCATGGAGCTTGTTCTATTATGCTTATGCATAGCAACAATGACGACGAAGGCAGAAGCAGAATGCATGATATATAAGGAGCGCAACCAACCCTTAAATACTAGAATCAATGACCTACTGAGCCGGATGACCTTGGAGGAAAAGATTGGCCAAATGACGCAGATAGACCGCAGTATTGCTTCACCTGAGGTGATGTACAAGTACAAGATTGGGAGTGTTTTGAGTGGGAGTGGGAGTGTGCCAGCAAAAAAGGCTTCTGCAGAAACTTGGATTAGAATGGTGAATGATTTTCAAAACGGATGTTTATCGACTCGGCTTGCTATTCCACTGATTTATGGTATTGATGCTATTCATGGCCACAACAATGTCTACAAGGCGACAATCTTTCCTCACAATATTGGACTGGGAGCTACCAGGGACCCTGAACTTGTTAAGAGGATTGGAGCTGCAACCGCGCTTGAAGTTAGAGCTACAGGAATCCATTATACCTTTGCACCTTGTGTAGCGGTTGGTAGAGATCCAAGATGGGGTCGTTGTTACGAAAGCTACAGTGAAGATCCTAAGCTTGTTCAAGCAATGACTGAGATCATACCTGGATTACAAGGAGAGATATCAGCTAACTCTAGAAAGGGTGCTCCCTATGTAGCAGGAAACGATAAGGTTGCAGCTTGTGCAAAGCATTATGTGGGAGATGGTGGAACAATCATGGGCCTCAATGAGAATAACACTGTGATAGATAGACATGGTTTACTGAGCATTCACATGCCACCCTGCTCCAGTGCAATTATCAAGGCTGTTGCAACCATTATGGGAATCAGTGCTGGCATTGATATGGTTATCATGGTTCCATACAACCATACAGAATTCATCAAGGATCTAACTTTCCATGTGAAAAATAAAATCATCCCCATGAGCAGAATTGACGATGCTGTGAAGAGAATTTTGCGGGTTAAGTTTACAATGGGGCTATTTGAGAAACCGTTGGCTGATCTCAGATTGGTCAACCAGCTGCTTGGCAGTCAGGAACATAGAGAATTGGCTAGGGAAGCAGTGAGGCGATCACTAGTGCTTCTAAAGAATGGTGAATCTGCTAAGAATCACCCCTTCCCAAGAAGACATCAAAAATTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0044042 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

384

Amino Acids

42.61

Weight (kDa)

9.3

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	51 - 277	7.4e-44	Glycosyl hydrolase family 3 N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	1 cut(s)	476
AciI	CCGC	4 cut(s)	190, 474, 527, 967
AclWI	GGATC	3 cut(s)	533, 572, 903
AcoI	YGGCCR	2 cut(s)	169, 376
AcsI	RAATTY	4 cut(s)	9, 884, 960, 1145
AdeI	CACNNNGTG	1 cut(s)	521
AfaI	GTAC	2 cut(s)	218, 224
AfiI	CCNNNNNNNGG	1 cut(s)	548
AgsI	TTSAA	3 cut(s)	314, 482, 593
AhlI	ACTAGT	1 cut(s)	1084
AjnI	CCWGG	2 cut(s)	434, 613
AluBI	AGCT	9 cut(s)	31, 431, 467, 491, 567, 586, 638, 689, 1030
AluI	AGCT	9 cut(s)	31, 431, 467, 491, 567, 586, 638, 689, 1030
Alw21I	GWGCWC	1 cut(s)	658
AlwI	GGATC	3 cut(s)	533, 572, 903
AoxI	GGCC	3 cut(s)	169, 376, 730
ApeKI	GCWGC	3 cut(s)	467, 686, 1030
ApoI	RAATTY	4 cut(s)	9, 884, 960, 1145
AspLEI	GCGC	2 cut(s)	105, 478
AspS9I	GGNCC	2 cut(s)	439, 730
AsuHPI	GGTGA	5 cut(s)	195, 223, 313, 1112, 1115
AvaII	GGWCC	1 cut(s)	439
AxyI	CCTNAGG	1 cut(s)	207
BalI	TGGCCA	2 cut(s)	171, 378
BbsI	GAAGAC	1 cut(s)	1141
Bbv12I	GWGCWC	1 cut(s)	658
BbvI	GCAGC	3 cut(s)	454, 698, 1017
BccI	CCATC	2 cut(s)	540, 707
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	2 cut(s)	436, 615
BcuI	ACTAGT	1 cut(s)	1084
BfaI	CTAG	5 cut(s)	6, 123, 645, 1062, 1085
BfmI	CTRYAG	3 cut(s)	279, 492, 568
BisI	GCNGC	3 cut(s)	468, 687, 1031
BlsI	GCNGC	3 cut(s)	469, 688, 1032
Bme1390I	CCNGG	2 cut(s)	436, 615
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	2 cut(s)	439, 730
BmiI	GGNNCC	3 cut(s)	440, 441, 867
BmrFI	CCNGG	2 cut(s)	436, 615
BmrI	ACTGGG	1 cut(s)	434
BmsI	GCATC	2 cut(s)	355, 937
BmuI	ACTGGG	1 cut(s)	434
BpiI	GAAGAC	1 cut(s)	1141
BpmI	CTGGAG	1 cut(s)	781
Bpu10I	CCTNAGC	1 cut(s)	582
BsaBI	GATNNNNATC	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	153, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse1I	ACTGG	2 cut(s)	429, 798
Bse21I	CCTNAGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	603
Bse8I	GATNNNNATC	1 cut(s)	325
BseBI	CCWGG	2 cut(s)	436, 615
BseDI	CCNNGG	2 cut(s)	153, 435
BseGI	GGATG	3 cut(s)	153, 326, 924
BseJI	GATNNNNATC	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	5 cut(s)	131, 198, 594, 764, 1027
BseNI	ACTGG	2 cut(s)	429, 798
BseXI	GCAGC	3 cut(s)	454, 698, 1017
Bsh1236I	CGCG	1 cut(s)	476
BshFI	GGCC	3 cut(s)	171, 378, 732
BsiHKAI	GWGCWC	1 cut(s)	658
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmFI	GGGAC	1 cut(s)	452
BsmI	GAATGC	2 cut(s)	89, 777
BsnI	GGCC	3 cut(s)	171, 378, 732
Bsp1286I	GDGCHC	1 cut(s)	658
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	6 cut(s)	538, 577, 606, 895, 1009, 1079
BspACI	CCGC	4 cut(s)	190, 474, 527, 967
BspANI	GGCC	3 cut(s)	171, 378, 732
BspCNI	CTCAG	5 cut(s)	132, 199, 595, 765, 1026
BspFNI	CGCG	1 cut(s)	476
BspLI	GGNNCC	3 cut(s)	440, 441, 867
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	3 cut(s)	533, 572, 903
BsrDI	GCAATG	1 cut(s)	603
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	429, 798
BssECI	CCNNGG	2 cut(s)	153, 435
BssMI	GATC	6 cut(s)	538, 577, 606, 895, 1009, 1079
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	436, 615
Bst4CI	ACNGT	3 cut(s)	572, 751, 1002
Bst6I	CTCTTC	1 cut(s)	950
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstAUI	TGTACA	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	264, 339, 844
BstDEI	CTNAG	7 cut(s)	140, 207, 582, 603, 773, 1013, 1113
BstF5I	GGATG	3 cut(s)	153, 326, 924
BstFNI	CGCG	1 cut(s)	476
BstHHI	GCGC	2 cut(s)	105, 478
BstKTI	GATC	6 cut(s)	541, 580, 609, 898, 1012, 1082
BstMBI	GATC	6 cut(s)	538, 577, 606, 895, 1009, 1079
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 473, 692, 1067
BstNI	CCWGG	2 cut(s)	436, 615
BstNSI	RCATGY	1 cut(s)	787
BstSCI	CCNGG	2 cut(s)	434, 613
BstSFI	CTRYAG	3 cut(s)	279, 492, 568
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	3 cut(s)	454, 698, 1017
BstV2I	GAAGAC	1 cut(s)	1141
BstX2I	RGATCY	3 cut(s)	538, 577, 895
BstXI	CCANNNNNNTGG	1 cut(s)	1034
BstYI	RGATCY	3 cut(s)	538, 577, 895
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	171, 378, 732
BtsCI	GGATG	3 cut(s)	153, 326, 924
BtsI	GCAGTG	1 cut(s)	1077
BtsIMutI	CAGTG	6 cut(s)	347, 577, 747, 805, 844, 1077
Cac8I	GCNNGC	3 cut(s)	264, 339, 844
CfoI	GCGC	2 cut(s)	105, 478
Cfr13I	GGNCC	2 cut(s)	439, 730
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	217, 223
CviAII	CATG	9 cut(s)	25, 88, 374, 727, 764, 784, 862, 908, 931
CviQI	GTAC	2 cut(s)	217, 223
DdeI	CTNAG	7 cut(s)	140, 207, 582, 603, 773, 1013, 1113
DpnI	GATC	6 cut(s)	540, 579, 608, 897, 1011, 1081
DpnII	GATC	6 cut(s)	538, 577, 606, 895, 1009, 1079
DraIII	CACNNNGTG	1 cut(s)	521
EaeI	YGGCCR	2 cut(s)	169, 376
Eam1104I	CTCTTC	1 cut(s)	950
EarI	CTCTTC	1 cut(s)	950
Eco130I	CCWWGG	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	633
Eco47I	GGWCC	1 cut(s)	439
Eco81I	CCTNAGG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRI	GAATTC	2 cut(s)	9, 884
EcoRII	CCWGG	2 cut(s)	434, 613
EcoRV	GATATC	1 cut(s)	633
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	2 cut(s)	53, 89
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	9 cut(s)	28, 91, 377, 730, 767, 787, 865, 911, 934
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	9 cut(s)	24, 87, 373, 726, 763, 783, 861, 907, 930
FauI	CCCGC	1 cut(s)	960
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	3 cut(s)	468, 687, 1031
FokI	GGATG	3 cut(s)	160, 333, 911
Fsp4HI	GCNGC	3 cut(s)	468, 687, 1031
FspBI	CTAG	5 cut(s)	6, 123, 645, 1062, 1085
GlaI	GCGC	2 cut(s)	104, 477
GluI	GCNGC	3 cut(s)	468, 687, 1031
GsuI	CTGGAG	1 cut(s)	781
HaeIII	GGCC	3 cut(s)	171, 378, 732
HapII	CCGG	1 cut(s)	145
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	2 cut(s)	105, 478
Hin1II	CATG	9 cut(s)	28, 91, 377, 730, 767, 787, 865, 911, 934
Hin6I	GCGC	2 cut(s)	103, 476
HinP1I	GCGC	2 cut(s)	103, 476
HincII	GTYRAC	1 cut(s)	1024
HindII	GTYRAC	1 cut(s)	1024
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	6 cut(s)	126, 331, 498, 834, 1106, 1117
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	5 cut(s)	195, 223, 313, 1112, 1115
Hpy166II	GTNNAC	4 cut(s)	391, 770, 978, 1024
Hpy188I	TCNGA	1 cut(s)	1016
Hpy188III	TCNNGA	2 cut(s)	645, 1043
Hpy8I	GTNNAC	4 cut(s)	391, 770, 978, 1024
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	64, 1135
HpyCH4III	ACNGT	3 cut(s)	572, 751, 1002
HpyCH4V	TGCA	9 cut(s)	51, 87, 281, 470, 515, 686, 695, 803, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 473, 692, 1067
HpyF3I	CTNAG	7 cut(s)	140, 207, 582, 603, 773, 1013, 1113
Hsp92II	CATG	9 cut(s)	28, 91, 377, 730, 767, 787, 865, 911, 934
HspAI	GCGC	2 cut(s)	103, 476
KflI	GGGWCCC	1 cut(s)	439
Kzo9I	GATC	6 cut(s)	538, 577, 606, 895, 1009, 1079
LmnI	GCTCC	6 cut(s)	28, 100, 428, 464, 661, 800
Lsp1109I	GCAGC	3 cut(s)	454, 698, 1017
LweI	GCATC	2 cut(s)	355, 937
MaeI	CTAG	5 cut(s)	6, 123, 645, 1062, 1085
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	6 cut(s)	540, 579, 608, 897, 1011, 1081
MboI	GATC	6 cut(s)	538, 577, 606, 895, 1009, 1079
MboII	GAAGA	5 cut(s)	10, 13, 587, 967, 1146
MflI	RGATCY	3 cut(s)	538, 577, 895
MhlI	GDGCHC	1 cut(s)	658
MlsI	TGGCCA	2 cut(s)	171, 378
MluCI	AATT	7 cut(s)	9, 804, 884, 939, 960, 1055, 1145
MluNI	TGGCCA	2 cut(s)	171, 378
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	6 cut(s)	151, 202, 420, 450, 743, 1068
Mox20I	TGGCCA	2 cut(s)	171, 378
Mph1103I	ATGCAT	2 cut(s)	53, 89
MscI	TGGCCA	2 cut(s)	171, 378
MseI	TTAA	3 cut(s)	116, 453, 972
MslI	CAYNNNNRTG	4 cut(s)	384, 782, 851, 929
Msp20I	TGGCCA	2 cut(s)	171, 378
MspA1I	CMGCKG	1 cut(s)	1030
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	2 cut(s)	436, 615
Mva1269I	GAATGC	2 cut(s)	89, 777
MvaI	CCWGG	2 cut(s)	436, 615
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	4 cut(s)	272, 473, 692, 1067
NdeII	GATC	6 cut(s)	538, 577, 606, 895, 1009, 1079
NlaIII	CATG	9 cut(s)	28, 91, 377, 730, 767, 787, 865, 911, 934
NlaIV	GGNNCC	3 cut(s)	440, 441, 867
NmeAIII	GCCGAG	1 cut(s)	313
NsiI	ATGCAT	2 cut(s)	53, 89
NspI	RCATGY	1 cut(s)	787
PctI	GAATGC	2 cut(s)	89, 777
PfeI	GAWTC	5 cut(s)	126, 498, 834, 1106, 1117
PkrI	GCNGC	3 cut(s)	469, 688, 1032
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	439
Psp5II	RGGWCCY	1 cut(s)	439
Psp6I	CCWGG	2 cut(s)	434, 613
PspGI	CCWGG	2 cut(s)	434, 613
PspN4I	GGNNCC	3 cut(s)	440, 441, 867
PspPI	GGNCC	2 cut(s)	439, 730
PspPPI	RGGWCCY	1 cut(s)	439
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	3 cut(s)	538, 577, 895
PvuII	CAGCTG	1 cut(s)	1030
RsaI	GTAC	2 cut(s)	218, 224
RsaNI	GTAC	2 cut(s)	217, 223
RseI	CAYNNNNRTG	4 cut(s)	384, 782, 851, 929
SaqAI	TTAA	3 cut(s)	116, 453, 972
SatI	GCNGC	3 cut(s)	468, 687, 1031
Sau3AI	GATC	6 cut(s)	538, 577, 606, 895, 1009, 1079
Sau96I	GGNCC	2 cut(s)	439, 730
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	436, 615
SduI	GDGCHC	1 cut(s)	658
SfaNI	GCATC	2 cut(s)	355, 937
SfcI	CTRYAG	3 cut(s)	279, 492, 568
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	4 cut(s)	384, 782, 851, 929
SpeI	ACTAGT	1 cut(s)	1084
Sse9I	AATT	7 cut(s)	9, 804, 884, 939, 960, 1055, 1145
SsiI	CCGC	4 cut(s)	190, 474, 527, 967
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	5 cut(s)	6, 123, 645, 1062, 1085
StyD4I	CCNGG	2 cut(s)	434, 613
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	3 cut(s)	572, 751, 1002
TaqI	TCGA	1 cut(s)	329
TasI	AATT	7 cut(s)	9, 804, 884, 939, 960, 1055, 1145
TatI	WGTACW	2 cut(s)	216, 222
TfiI	GAWTC	5 cut(s)	126, 498, 834, 1106, 1117
Tru1I	TTAA	3 cut(s)	116, 453, 972
Tru9I	TTAA	3 cut(s)	116, 453, 972
TscAI	CASTG	6 cut(s)	354, 577, 754, 805, 844, 1077
TseI	GCWGC	3 cut(s)	467, 686, 1030
TspDTI	ATGAA	3 cut(s)	13, 362, 877
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	6 cut(s)	354, 577, 754, 805, 844, 1077
VpaK11BI	GGWCC	1 cut(s)	439
XapI	RAATTY	4 cut(s)	9, 884, 960, 1145
XbaI	TCTAGA	1 cut(s)	644
XceI	RCATGY	1 cut(s)	787
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	5 cut(s)	6, 123, 645, 1062, 1085
Zsp2I	ATGCAT	2 cut(s)	53, 89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.