Rh5DG551900

Belongs to the glycosyl hydrolase 3 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
84970620 .. 84977501
6882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG551900.1

Sequence Viewer

Length: 846 bp
ATGACCCAGATAGAGCGTCAGGTCGCTACCCCTTCTGCCATTAAAGACTTCTTAATCGGGAGTGTAACCAGTGGTGCAGGAAGTGGGCCGTTTAGGAAGGCTTTATCGGCGGACTGGGCCGATATGGTTGACGGGTTTCAGAGGTGTGCGCTGGAAACCCCGCTCCGGATTCCATTGATATGTGGGATTGATGCTGTTCATGGGAACAATAGCGTCTATGGTGCCACTATATTTCCTCATAATGTTGGTCTTGGGGCTACCAGAGATGCGGATTTGGCTCAAAGGATTGGTGAGGCAACTGCTCTTGAAGTCAGGGCTAGTGGGATTCACTACACTTTTGCTCCCTGTGTAGCTGGAATTGTGATTTCTGACTGGGACGGTATTGAAACACTCAGTGAGCCTCAAGGGTCAAACTATCGTTTCTGCATTTTATCTGCTGTCAATGCTGGAATTGACATGTTTATGGTGCCTTTCAGATTTGAAAATTTTGTGGATGATTTAGTGAATCTGGTGGAACATGGGGAGATACCAATGTCCAGGATGGATGATGCTGTTGAGAGAGTACTGAGAGTAAAGTTTGTTGCTGGTCTTTTTGAACATCCCTTTTCTGTAGATCCTTGCTGGACAGATTTGGTTCTGCATAGGGATCTGGCACGTGAAGCTGTTCGCAAGTCATTGGTTCTGTTGAAGAATGGAAAGGAGCCAAGAAAACCTTTTCTTCCATTAGATAGAAAAGCCAAAAGAATACTGGTTACCGGAACACATGCTGATGTTCTTGGATATCAGTGTGGAGGATGGACAGTTACTAGGGCTGGATTAAGTAGCAGGTTCACCACTGGTATGTAA

Protein Analysis

281

Amino Acids

30.71

Weight (kDa)

6.17

Isoelectric Point (pI)

17.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_3 PF00933 7 - 117 9.6e-18 Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3 PF00933 119 - 191 2.6e-10 Glycosyl hydrolase family 3 N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 816
AccB1I GGYRCC 2 cut(s) 221, 466
AccBSI CCGCTC 1 cut(s) 163
AccIII TCCGGA 1 cut(s) 165
AciI CCGC 3 cut(s) 110, 161, 269
AclWI GGATC 2 cut(s) 608, 654
AcsI RAATTY 1 cut(s) 484
AcvI CACGTG 1 cut(s) 656
AdeI CACNNNGTG 1 cut(s) 395
AfaI GTAC 1 cut(s) 564
AfiI CCNNNNNNNGG 1 cut(s) 165
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 5 cut(s) 308, 386, 482, 596, 688
AjnI CCWGG 1 cut(s) 536
AluBI AGCT 2 cut(s) 353, 662
AluI AGCT 2 cut(s) 353, 662
AlwI GGATC 2 cut(s) 608, 654
Aor13HI TCCGGA 1 cut(s) 165
AoxI GGCC 2 cut(s) 86, 117
ApoI RAATTY 1 cut(s) 484
Asp700I GAANNNNTTC 1 cut(s) 663
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 86, 117
AsuHPI GGTGA 2 cut(s) 302, 823
BaeI ACNNNNGTAYC 2 cut(s) 518, 551
BanI GGYRCC 2 cut(s) 221, 466
BbrPI CACGTG 1 cut(s) 656
BccI CCATC 2 cut(s) 535, 789
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 1 cut(s) 538
BfaI CTAG 2 cut(s) 318, 807
BfmI CTRYAG 1 cut(s) 609
BfuAI ACCTGC 1 cut(s) 816
BmcAI AGTACT 1 cut(s) 564
Bme1390I CCNGG 1 cut(s) 538
BmgT120I GGNCC 2 cut(s) 86, 117
BmiI GGNNCC 3 cut(s) 223, 468, 702
BmrFI CCNGG 1 cut(s) 538
BmrI ACTGGG 2 cut(s) 124, 382
BmsI GCATC 3 cut(s) 181, 256, 538
BmuI ACTGGG 2 cut(s) 124, 382
BpuEI CTTGAG 1 cut(s) 387
BsaAI YACGTR 1 cut(s) 656
BsaWI WCCGGW 2 cut(s) 165, 755
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 5 cut(s) 69, 119, 377, 753, 841
BseAI TCCGGA 1 cut(s) 165
BseBI CCWGG 1 cut(s) 538
BseGI GGATG 5 cut(s) 499, 546, 550, 598, 800
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMII CTCAG 2 cut(s) 406, 557
BseNI ACTGG 5 cut(s) 69, 119, 377, 753, 841
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 2 cut(s) 88, 119
BshNI GGYRCC 2 cut(s) 221, 466
BsiSI CCGG 2 cut(s) 166, 756
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 2 cut(s) 88, 119
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 2 cut(s) 613, 646
BspACI CCGC 3 cut(s) 110, 161, 269
BspANI GGCC 2 cut(s) 88, 119
BspCNI CTCAG 2 cut(s) 405, 558
BspEI TCCGGA 1 cut(s) 165
BspLI GGNNCC 3 cut(s) 223, 468, 702
BspMI ACCTGC 1 cut(s) 816
BspPI GGATC 2 cut(s) 608, 654
BspT107I GGYRCC 2 cut(s) 221, 466
BsrBI CCGCTC 1 cut(s) 163
BsrI ACTGG 5 cut(s) 69, 119, 377, 753, 841
BssMI GATC 2 cut(s) 613, 646
Bst2UI CCWGG 1 cut(s) 538
Bst4CI ACNGT 2 cut(s) 380, 802
BstBAI YACGTR 1 cut(s) 656
BstDEI CTNAG 2 cut(s) 392, 566
BstEII GGTNACC 1 cut(s) 751
BstF5I GGATG 5 cut(s) 499, 546, 550, 598, 800
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 2 cut(s) 616, 649
BstMBI GATC 2 cut(s) 613, 646
BstMWI GCNNNNNNNGC 5 cut(s) 107, 116, 275, 443, 659
BstNI CCWGG 1 cut(s) 538
BstNSI RCATGY 2 cut(s) 460, 767
BstPI GGTNACC 1 cut(s) 751
BstSCI CCNGG 1 cut(s) 536
BstSFI CTRYAG 1 cut(s) 609
BstX2I RGATCY 2 cut(s) 613, 646
BstYI RGATCY 2 cut(s) 613, 646
BsuRI GGCC 2 cut(s) 88, 119
BtsCI GGATG 5 cut(s) 499, 546, 550, 598, 800
BtsIMutI CAGTG 4 cut(s) 76, 400, 791, 834
BveI ACCTGC 1 cut(s) 816
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 86, 117
CseI GACGC 2 cut(s) 5, 202
Csp6I GTAC 1 cut(s) 563
CviAII CATG 4 cut(s) 200, 457, 518, 764
CviQI GTAC 1 cut(s) 563
DdeI CTNAG 2 cut(s) 392, 566
DpnI GATC 2 cut(s) 615, 648
DpnII GATC 2 cut(s) 613, 646
DraIII CACNNNGTG 1 cut(s) 395
EciI GGCGGA 1 cut(s) 125
Eco32I GATATC 1 cut(s) 782
Eco72I CACGTG 1 cut(s) 656
Eco91I GGTNACC 1 cut(s) 751
EcoO65I GGTNACC 1 cut(s) 751
EcoRII CCWGG 1 cut(s) 536
EcoRV GATATC 1 cut(s) 782
FaeI CATG 4 cut(s) 203, 460, 521, 767
FalI AAGNNNNNCTT 2 cut(s) 697, 729
FaqI GGGAC 1 cut(s) 389
FatI CATG 4 cut(s) 199, 456, 517, 763
FauI CCCGC 1 cut(s) 168
FokI GGATG 5 cut(s) 506, 553, 557, 585, 807
FspBI CTAG 2 cut(s) 318, 807
GlaI GCGC 1 cut(s) 150
HaeIII GGCC 2 cut(s) 88, 119
HapII CCGG 2 cut(s) 166, 756
HgaI GACGC 2 cut(s) 5, 202
HhaI GCGC 1 cut(s) 151
Hin1II CATG 4 cut(s) 203, 460, 521, 767
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 3 cut(s) 169, 325, 505
HpaII CCGG 2 cut(s) 166, 756
HphI GGTGA 2 cut(s) 302, 823
Hpy166II GTNNAC 2 cut(s) 130, 831
Hpy188I TCNGA 3 cut(s) 141, 370, 476
Hpy188III TCNNGA 3 cut(s) 58, 166, 305
Hpy8I GTNNAC 2 cut(s) 130, 831
HpyAV CCTTC 2 cut(s) 42, 91
HpyCH4III ACNGT 2 cut(s) 380, 802
HpyCH4IV ACGT 1 cut(s) 655
HpyCH4V TGCA 3 cut(s) 77, 426, 640
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 116, 275, 443, 659
HpyF3I CTNAG 2 cut(s) 392, 566
HpySE526I ACGT 1 cut(s) 655
Hsp92II CATG 4 cut(s) 203, 460, 521, 767
HspAI GCGC 1 cut(s) 149
Kpn2I TCCGGA 1 cut(s) 165
Kzo9I GATC 2 cut(s) 613, 646
LmnI GCTCC 3 cut(s) 168, 346, 700
LweI GCATC 3 cut(s) 181, 256, 538
MaeI CTAG 2 cut(s) 318, 807
MaeII ACGT 1 cut(s) 655
MaeIII GTNAC 3 cut(s) 64, 751, 802
MalI GATC 2 cut(s) 615, 648
MbiI CCGCTC 1 cut(s) 163
MboI GATC 2 cut(s) 613, 646
MboII GAAGA 2 cut(s) 700, 710
MflI RGATCY 2 cut(s) 613, 646
MluCI AATT 3 cut(s) 357, 450, 484
MnlI CCTC 5 cut(s) 135, 246, 286, 411, 785
MroI TCCGGA 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 663
MseI TTAA 3 cut(s) 42, 53, 818
MslI CAYNNNNRTG 4 cut(s) 178, 461, 768, 839
MspI CCGG 2 cut(s) 166, 756
MspR9I CCNGG 1 cut(s) 538
MvaI CCWGG 1 cut(s) 538
MwoI GCNNNNNNNGC 5 cut(s) 107, 116, 275, 443, 659
NdeII GATC 2 cut(s) 613, 646
NlaIII CATG 4 cut(s) 203, 460, 521, 767
NlaIV GGNNCC 3 cut(s) 223, 468, 702
NspI RCATGY 2 cut(s) 460, 767
PciI ACATGT 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 663
PfeI GAWTC 3 cut(s) 169, 325, 505
PfoI TCCNGGA 1 cut(s) 536
PmaCI CACGTG 1 cut(s) 656
PmlI CACGTG 1 cut(s) 656
Ppu21I YACGTR 1 cut(s) 656
PscI ACATGT 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 536
PspCI CACGTG 1 cut(s) 656
PspEI GGTNACC 1 cut(s) 751
PspGI CCWGG 1 cut(s) 536
PspN4I GGNNCC 3 cut(s) 223, 468, 702
PspPI GGNCC 2 cut(s) 86, 117
PsuI RGATCY 2 cut(s) 613, 646
RsaI GTAC 1 cut(s) 564
RsaNI GTAC 1 cut(s) 563
RseI CAYNNNNRTG 4 cut(s) 178, 461, 768, 839
SaqAI TTAA 3 cut(s) 42, 53, 818
Sau3AI GATC 2 cut(s) 613, 646
Sau96I GGNCC 2 cut(s) 86, 117
ScaI AGTACT 1 cut(s) 564
ScrFI CCNGG 1 cut(s) 538
SetI ASST 7 cut(s) 24, 146, 355, 658, 664, 715, 830
SfaNI GCATC 3 cut(s) 181, 256, 538
SfcI CTRYAG 1 cut(s) 609
SmiMI CAYNNNNRTG 4 cut(s) 178, 461, 768, 839
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
Sse9I AATT 3 cut(s) 357, 450, 484
SsiI CCGC 3 cut(s) 110, 161, 269
SspMI CTAG 2 cut(s) 318, 807
StyD4I CCNGG 1 cut(s) 536
TaaI ACNGT 2 cut(s) 380, 802
TaiI ACGT 1 cut(s) 658
TasI AATT 3 cut(s) 357, 450, 484
TatI WGTACW 1 cut(s) 562
TfiI GAWTC 3 cut(s) 169, 325, 505
Tru1I TTAA 3 cut(s) 42, 53, 818
Tru9I TTAA 3 cut(s) 42, 53, 818
TscAI CASTG 4 cut(s) 76, 400, 791, 841
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 4 cut(s) 76, 400, 791, 841
XapI RAATTY 1 cut(s) 484
XceI RCATGY 2 cut(s) 460, 767
XcmI CCANNNNNNNNNTGG 1 cut(s) 745
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 2 cut(s) 318, 807
ZrmI AGTACT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.