Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002912.1

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

109319 .. 110269

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002912.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgacgacgaaggcagaagcagaatgcatgatatataaggaccgcaaccaacccttaaatactagaatcaatgacctactgagccggatgaccttggaggaaaagattggccaaatgacgcagatagaccgcagtgttgcttcacctgaggtgatgtacaagtacaagattgaaacttggattagaatggtgaatgattttcaaaacggatctttatcgactcggcttgctattccactgatttatggtattgatgctattcatggccacaacaatgtctacaaggcgacaacctttcctcacaatattggactggaccctgaacttgttaagaggattggagctgcaaccgcgcttgaagttagagctacaggaatccattatacctttgcaccttgtgtagcggtttgtagagatccaagatggggttgttgttacgaaagctacagtgaagatcctaagcttgttcaagcaatgactgagatcatacctagattacaaggagagatatcagctaactctagaaagggtgctccctatgtagcaggaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0044042 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

184

Amino Acids

20.7

Weight (kDa)

8.25

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	1 cut(s)	353
AciI	CCGC	4 cut(s)	43, 130, 351, 404
AclWI	GGATC	3 cut(s)	217, 410, 449
AcoI	YGGCCR	2 cut(s)	109, 265
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	2 cut(s)	158, 164
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgsI	TTSAA	4 cut(s)	173, 203, 359, 470
AluBI	AGCT	5 cut(s)	344, 368, 444, 463, 515
AluI	AGCT	5 cut(s)	344, 368, 444, 463, 515
Alw21I	GWGCWC	1 cut(s)	535
AlwI	GGATC	3 cut(s)	217, 410, 449
AoxI	GGCC	2 cut(s)	109, 265
ApeKI	GCWGC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	2 cut(s)	40, 316
AsuHPI	GGTGA	3 cut(s)	135, 163, 202
AvaII	GGWCC	2 cut(s)	40, 316
AxyI	CCTNAGG	1 cut(s)	147
BalI	TGGCCA	2 cut(s)	111, 267
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	1 cut(s)	417
BfaI	CTAG	3 cut(s)	63, 492, 522
BfmI	CTRYAG	2 cut(s)	369, 445
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme18I	GGWCC	2 cut(s)	40, 316
BmgT120I	GGNCC	2 cut(s)	40, 316
BmiI	GGNNCC	1 cut(s)	318
BmsI	GCATC	1 cut(s)	244
Bpu10I	CCTNAGC	1 cut(s)	459
BsaBI	GATNNNNATC	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	318
Bse21I	CCTNAGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	480
Bse8I	GATNNNNATC	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	93
BseJI	GATNNNNATC	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	3 cut(s)	71, 138, 471
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	331
Bsh1236I	CGCG	1 cut(s)	353
BshFI	GGCC	2 cut(s)	111, 267
BsiHKAI	GWGCWC	1 cut(s)	535
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	111, 267
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	4 cut(s)	209, 415, 454, 483
BspACI	CCGC	4 cut(s)	43, 130, 351, 404
BspANI	GGCC	2 cut(s)	111, 267
BspCNI	CTCAG	3 cut(s)	72, 139, 472
BspFNI	CGCG	1 cut(s)	353
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	3 cut(s)	217, 410, 449
BsrDI	GCAATG	1 cut(s)	480
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	4 cut(s)	209, 415, 454, 483
BssT1I	CCWWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	449
BstAUI	TGTACA	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	4 cut(s)	80, 147, 459, 480
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	4 cut(s)	212, 418, 457, 486
BstMBI	GATC	4 cut(s)	209, 415, 454, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstSFI	CTRYAG	2 cut(s)	369, 445
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	3 cut(s)	209, 415, 454
BstYI	RGATCY	3 cut(s)	209, 415, 454
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	111, 267
BtsCI	GGATG	1 cut(s)	93
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	3 cut(s)	139, 236, 454
Cac8I	GCNNGC	1 cut(s)	228
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	40, 316
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	157, 163
CviAII	CATG	2 cut(s)	28, 263
CviJI	RGCY	9 cut(s)	84, 111, 226, 267, 344, 368, 444, 463, 515
CviKI_1	RGCY	9 cut(s)	84, 111, 226, 267, 344, 368, 444, 463, 515
CviQI	GTAC	2 cut(s)	157, 163
DdeI	CTNAG	4 cut(s)	80, 147, 459, 480
DpnI	GATC	4 cut(s)	211, 417, 456, 485
DpnII	GATC	4 cut(s)	209, 415, 454, 483
DraIII	CACNNNGTG	1 cut(s)	398
EaeI	YGGCCR	2 cut(s)	109, 265
Eco130I	CCWWGG	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	510
Eco47I	GGWCC	2 cut(s)	40, 316
Eco81I	CCTNAGG	1 cut(s)	147
EcoRV	GATATC	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	2 cut(s)	31, 266
FaiI	YATR	8 cut(s)	29, 34, 36, 246, 264, 384, 488, 540
FatI	CATG	2 cut(s)	27, 262
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	3 cut(s)	63, 492, 522
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	111, 267
HapII	CCGG	1 cut(s)	85
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	2 cut(s)	31, 266
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	3 cut(s)	66, 220, 375
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	3 cut(s)	135, 163, 202
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188III	TCNNGA	1 cut(s)	522
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4V	TGCA	3 cut(s)	27, 347, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	4 cut(s)	80, 147, 459, 480
Hsp92II	CATG	2 cut(s)	31, 266
HspAI	GCGC	1 cut(s)	353
Kzo9I	GATC	4 cut(s)	209, 415, 454, 483
LmnI	GCTCC	2 cut(s)	341, 538
LpnPI	CCDG	6 cut(s)	98, 159, 299, 333, 357, 531
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	3 cut(s)	63, 492, 522
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	4 cut(s)	211, 417, 456, 485
MboI	GATC	4 cut(s)	209, 415, 454, 483
MboII	GAAGA	1 cut(s)	464
MflI	RGATCY	3 cut(s)	209, 415, 454
MhlI	GDGCHC	1 cut(s)	535
MlsI	TGGCCA	2 cut(s)	111, 267
MluNI	TGGCCA	2 cut(s)	111, 267
MlyI	GAGTC	1 cut(s)	214
MnlI	CCTC	4 cut(s)	91, 142, 309, 327
Mox20I	TGGCCA	2 cut(s)	111, 267
Mph1103I	ATGCAT	1 cut(s)	29
MscI	TGGCCA	2 cut(s)	111, 267
MseI	TTAA	2 cut(s)	56, 330
MslI	CAYNNNNRTG	1 cut(s)	273
Msp20I	TGGCCA	2 cut(s)	111, 267
MspI	CCGG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	29
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	350
NdeII	GATC	4 cut(s)	209, 415, 454, 483
NlaIII	CATG	2 cut(s)	31, 266
NlaIV	GGNNCC	1 cut(s)	318
NmeAIII	GCCGAG	1 cut(s)	202
NsiI	ATGCAT	1 cut(s)	29
PctI	GAATGC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	66, 375
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	2 cut(s)	40, 316
PsuI	RGATCY	3 cut(s)	209, 415, 454
RsaI	GTAC	2 cut(s)	158, 164
RsaNI	GTAC	2 cut(s)	157, 163
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	56, 330
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	4 cut(s)	209, 415, 454, 483
Sau96I	GGNCC	2 cut(s)	40, 316
SchI	GAGTC	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	535
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	2 cut(s)	369, 445
SinI	GGWCC	2 cut(s)	40, 316
SmiMI	CAYNNNNRTG	1 cut(s)	273
SsiI	CCGC	4 cut(s)	43, 130, 351, 404
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	3 cut(s)	63, 492, 522
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	449
TaqI	TCGA	1 cut(s)	218
TatI	WGTACW	2 cut(s)	156, 162
TfiI	GAWTC	2 cut(s)	66, 375
Tru1I	TTAA	2 cut(s)	56, 330
Tru9I	TTAA	2 cut(s)	56, 330
TscAI	CASTG	3 cut(s)	139, 243, 454
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	3 cut(s)	139, 243, 454
VpaK11BI	GGWCC	2 cut(s)	40, 316
XbaI	TCTAGA	1 cut(s)	521
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	3 cut(s)	63, 492, 522
Zsp2I	ATGCAT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.