Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

4003812 .. 4006487

Gene Structure 2676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04670.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCTTGGGTTTCGTTACCCGTGGTGGGTTTGTTGTTGGTTTGGTGGTGGATGGGTTTTGTAACGGTCAAAGCCGATTACATCAAGTACAAAGATCCATCCCAACCACCGGCTGCTCGAGTTGGAGACCTTCTTAGTAGAATGACTCTTGAAGAGAAGATTGGTCAGATGGTGCAGATTGATAGGAGTGTTGCCTCTGCTGATACTATGAAAACTTACTATATTGGTAGTGTATTGAGCGGTGGTGGCAGTGCACCACTTCCAGAAGCTAGTGCTGAAGACTGGGTTAACATGATTAATGAATTTCAGAAGGGAGCCCTATCTAGTCGTTTGGGCATTCCAATGATCTATGGCATTGATGCTGTTCATGGACACAATAATGTCTATAATGCTACAATATTTCCCCATAATGTTGGGCTTGGAGCTACCAGGGACCCTGAACTGGTACGAAGAATTGGTTCTGCAACTGCTCTTGAAACCCGAGCTACGGGGATTCCTTATGTATTTGCTCCGTGCATTGCGGTATGTAGAGATCCAAGATGGGGTCGATGTTATGAAAGCTACAGTGAAGATCACAAAATTGTGGAGGAAATGACAGAGATTATTCCAGGTTTGCAGGGAGATATCCCTGCTAATTCTCGGAAAGGAGTGCCATATGTTGGTGGAAAGAAAAAGGTTGCAGCTTGTGCAAAGCACTTCGTCGGTGATGGTGGGACAAGCAGGGGCATTAATGAGAACAACACTGTGACTGACCGGCATGAGTTGCTTAGCATCCACATGCCTGCCTATTCTGATTCGATCGATCATGCGTGTCTCAACCGTGATGATTTCCTACTCCAGTTGGAATGGGGAAAAGATGCATGCAAATCATCGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

293

Amino Acids

32.0

Weight (kDa)

6.07

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	659
AccBSI	CCGCTC	1 cut(s)	240
AciI	CCGC	2 cut(s)	240, 521
AclWI	GGATC	2 cut(s)	89, 527
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	2 cut(s)	89, 447
AfiI	CCNNNNNNNGG	6 cut(s)	26, 109, 442, 487, 542, 659
AgsI	TTSAA	2 cut(s)	152, 476
AjnI	CCWGG	2 cut(s)	428, 607
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AluBI	AGCT	5 cut(s)	269, 425, 485, 561, 683
AluI	AGCT	5 cut(s)	269, 425, 485, 561, 683
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	2 cut(s)	120, 818
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	89, 527
Ama87I	CYCGRG	2 cut(s)	117, 480
ApaLI	GTGCAC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	113, 680
ApoI	RAATTY	1 cut(s)	302
AseI	ATTAAT	2 cut(s)	297, 729
Asp700I	GAANNNNTTC	1 cut(s)	457
AspS9I	GGNCC	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	716
AvaI	CYCGRG	2 cut(s)	117, 480
AvaII	GGWCC	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	100, 692
BccI	CCATC	5 cut(s)	46, 106, 163, 534, 701
BciT130I	CCWGG	2 cut(s)	430, 609
BcoDI	GTCTC	2 cut(s)	120, 818
BfaI	CTAG	2 cut(s)	270, 324
BfmI	CTRYAG	1 cut(s)	562
BisI	GCNGC	2 cut(s)	114, 681
BlpI	GCTNAGC	1 cut(s)	767
BlsI	GCNGC	2 cut(s)	115, 682
Bme1390I	CCNGG	2 cut(s)	430, 609
Bme18I	GGWCC	1 cut(s)	433
BmeT110I	CYCGRG	2 cut(s)	117, 480
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	3 cut(s)	316, 434, 435
BmrFI	CCNGG	2 cut(s)	430, 609
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	3 cut(s)	349, 780, 847
BmuI	ACTGGG	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	821
Bpu1102I	GCTNAGC	1 cut(s)	767
Bsa29I	ATCGAT	2 cut(s)	801, 872
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	21, 429
Bsc4I	CCNNNNNNNGG	6 cut(s)	26, 109, 442, 487, 542, 659
Bse118I	RCCGGY	2 cut(s)	109, 753
Bse1I	ACTGG	3 cut(s)	287, 447, 838
Bse3DI	GCAATG	1 cut(s)	516
BseBI	CCWGG	2 cut(s)	430, 609
BseCI	ATCGAT	2 cut(s)	801, 872
BseDI	CCNNGG	2 cut(s)	21, 429
BseGI	GGATG	3 cut(s)	57, 98, 771
BseLI	CCNNNNNNNGG	6 cut(s)	26, 109, 442, 487, 542, 659
BseMI	GCAATG	1 cut(s)	516
BseNI	ACTGG	3 cut(s)	287, 447, 838
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	100, 692
BsgI	GTGCAG	1 cut(s)	194
Bsh1285I	CGRYCG	1 cut(s)	801
BshVI	ATCGAT	2 cut(s)	801, 872
BsiEI	CGRYCG	1 cut(s)	801
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	2 cut(s)	117, 480
BsiSI	CCGG	2 cut(s)	110, 754
BslFI	GGGAC	2 cut(s)	446, 727
BslI	CCNNNNNNNGG	6 cut(s)	26, 109, 442, 487, 542, 659
BsmAI	GTCTC	2 cut(s)	120, 818
BsmFI	GGGAC	2 cut(s)	446, 727
BsmI	GAATGC	1 cut(s)	336
Bso31I	GGTCTC	1 cut(s)	120
BsoBI	CYCGRG	2 cut(s)	117, 480
Bsp1286I	GDGCHC	2 cut(s)	256, 319
Bsp143I	GATC	7 cut(s)	94, 345, 532, 571, 798, 802, 873
Bsp1720I	GCTNAGC	1 cut(s)	767
BspACI	CCGC	2 cut(s)	240, 521
BspDI	ATCGAT	2 cut(s)	801, 872
BspLI	GGNNCC	3 cut(s)	316, 434, 435
BspPI	GGATC	2 cut(s)	89, 527
BspTNI	GGTCTC	1 cut(s)	120
BsrBI	CCGCTC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	516
BsrFI	RCCGGY	2 cut(s)	109, 753
BsrI	ACTGG	3 cut(s)	287, 447, 838
BssAI	RCCGGY	2 cut(s)	109, 753
BssECI	CCNNGG	2 cut(s)	21, 429
BssMI	GATC	7 cut(s)	94, 345, 532, 571, 798, 802, 873
Bst2UI	CCWGG	2 cut(s)	430, 609
Bst4CI	ACNGT	4 cut(s)	67, 566, 745, 821
Bst6I	CTCTTC	1 cut(s)	147
BstAPI	GCANNNNNTGC	2 cut(s)	686, 763
BstC8I	GCNNGC	2 cut(s)	783, 862
BstDEI	CTNAG	2 cut(s)	134, 767
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	3 cut(s)	57, 98, 771
BstKTI	GATC	7 cut(s)	97, 348, 535, 574, 801, 805, 876
BstMAI	GTCTC	2 cut(s)	120, 818
BstMBI	GATC	7 cut(s)	94, 345, 532, 571, 798, 802, 873
BstMCI	CGRYCG	1 cut(s)	801
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 686, 763
BstNI	CCWGG	2 cut(s)	430, 609
BstNSI	RCATGY	2 cut(s)	781, 864
BstSCI	CCNGG	2 cut(s)	428, 607
BstSFI	CTRYAG	1 cut(s)	562
BstSLI	GKGCMC	1 cut(s)	256
BstV1I	GCAGC	2 cut(s)	100, 692
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	2 cut(s)	94, 532
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstYI	RGATCY	2 cut(s)	94, 532
Bsu15I	ATCGAT	2 cut(s)	801, 872
BsuTUI	ATCGAT	2 cut(s)	801, 872
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	57, 98, 771
BtsI	GCAGTG	1 cut(s)	256
BtsIMutI	CAGTG	3 cut(s)	256, 571, 741
Cac8I	GCNNGC	2 cut(s)	783, 862
Cfr10I	RCCGGY	2 cut(s)	109, 753
Cfr13I	GGNCC	1 cut(s)	433
ClaI	ATCGAT	2 cut(s)	801, 872
Csp6I	GTAC	2 cut(s)	88, 446
CviAII	CATG	6 cut(s)	292, 368, 758, 778, 806, 861
CviQI	GTAC	2 cut(s)	88, 446
DdeI	CTNAG	2 cut(s)	134, 767
DpnI	GATC	7 cut(s)	96, 347, 534, 573, 800, 804, 875
DpnII	GATC	7 cut(s)	94, 345, 532, 571, 798, 802, 873
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	319
Eco31I	GGTCTC	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	297
Eco88I	CYCGRG	2 cut(s)	117, 480
EcoO109I	RGGNCCY	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	428, 607
EcoRV	GATATC	1 cut(s)	625
EcoT22I	ATGCAT	1 cut(s)	862
EcoT38I	GRGCYC	1 cut(s)	319
FaeI	CATG	6 cut(s)	295, 371, 761, 781, 809, 864
FaqI	GGGAC	2 cut(s)	446, 727
FatI	CATG	6 cut(s)	291, 367, 757, 777, 805, 860
FauNDI	CATATG	1 cut(s)	655
Fnu4HI	GCNGC	2 cut(s)	114, 681
FokI	GGATG	3 cut(s)	64, 85, 758
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	2 cut(s)	114, 681
FspBI	CTAG	2 cut(s)	270, 324
GluI	GCNGC	2 cut(s)	114, 681
GsuI	CTGGAG	1 cut(s)	821
HapII	CCGG	2 cut(s)	110, 754
Hin1II	CATG	6 cut(s)	295, 371, 761, 781, 809, 864
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	3 cut(s)	145, 493, 794
HpaI	GTTAAC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	110, 754
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	2 cut(s)	254, 289
Hpy188I	TCNGA	4 cut(s)	168, 309, 642, 793
Hpy188III	TCNNGA	3 cut(s)	149, 263, 473
Hpy8I	GTNNAC	2 cut(s)	254, 289
Hpy99I	CGWCG	1 cut(s)	704
HpyAV	CCTTC	2 cut(s)	140, 304
HpyCH4III	ACNGT	4 cut(s)	67, 566, 745, 821
HpyCH4V	TGCA	9 cut(s)	175, 254, 464, 516, 616, 680, 689, 860, 864
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 686, 763
HpyF3I	CTNAG	2 cut(s)	134, 767
Hsp92II	CATG	6 cut(s)	295, 371, 761, 781, 809, 864
KflI	GGGWCCC	1 cut(s)	433
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	7 cut(s)	94, 345, 532, 571, 798, 802, 873
LmnI	GCTCC	3 cut(s)	314, 422, 514
Lsp1109I	GCAGC	2 cut(s)	100, 692
LweI	GCATC	3 cut(s)	349, 780, 847
MaeI	CTAG	2 cut(s)	270, 324
MaeIII	GTNAC	3 cut(s)	15, 61, 745
MalI	GATC	7 cut(s)	96, 347, 534, 573, 800, 804, 875
MbiI	CCGCTC	1 cut(s)	240
MboI	GATC	7 cut(s)	94, 345, 532, 571, 798, 802, 873
MboII	GAAGA	5 cut(s)	164, 169, 290, 462, 581
MflI	RGATCY	2 cut(s)	94, 532
MhlI	GDGCHC	2 cut(s)	256, 319
MluCI	AATT	4 cut(s)	302, 453, 579, 634
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	2 cut(s)	103, 822
MnlI	CCTC	2 cut(s)	205, 580
Mph1103I	ATGCAT	1 cut(s)	862
MroXI	GAANNNNTTC	1 cut(s)	457
MseI	TTAA	3 cut(s)	288, 297, 729
MslI	CAYNNNNRTG	3 cut(s)	341, 378, 776
MspI	CCGG	2 cut(s)	110, 754
MspR9I	CCNGG	2 cut(s)	430, 609
Mva1269I	GAATGC	1 cut(s)	336
MvaI	CCWGG	2 cut(s)	430, 609
MwoI	GCNNNNNNNGC	3 cut(s)	246, 686, 763
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	7 cut(s)	94, 345, 532, 571, 798, 802, 873
NlaIII	CATG	6 cut(s)	295, 371, 761, 781, 809, 864
NlaIV	GGNNCC	3 cut(s)	316, 434, 435
NmuCI	GTSAC	1 cut(s)	745
NsiI	ATGCAT	1 cut(s)	862
NspI	RCATGY	2 cut(s)	781, 864
PaeI	GCATGC	1 cut(s)	864
PaeR7I	CTCGAG	1 cut(s)	117
PctI	GAATGC	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	493, 794
PflMI	CCANNNNNTGG	1 cut(s)	659
PkrI	GCNGC	2 cut(s)	115, 682
Ple19I	CGATCG	1 cut(s)	801
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	433
PshBI	ATTAAT	2 cut(s)	297, 729
Psp5II	RGGWCCY	1 cut(s)	433
Psp6I	CCWGG	2 cut(s)	428, 607
PspGI	CCWGG	2 cut(s)	428, 607
PspN4I	GGNNCC	3 cut(s)	316, 434, 435
PspPI	GGNCC	1 cut(s)	433
PspPPI	RGGWCCY	1 cut(s)	433
PspXI	VCTCGAGB	1 cut(s)	117
PsuI	RGATCY	2 cut(s)	94, 532
PvuI	CGATCG	1 cut(s)	801
RsaI	GTAC	2 cut(s)	89, 447
RsaNI	GTAC	2 cut(s)	88, 446
RseI	CAYNNNNRTG	3 cut(s)	341, 378, 776
SaqAI	TTAA	3 cut(s)	288, 297, 729
SatI	GCNGC	2 cut(s)	114, 681
Sau3AI	GATC	7 cut(s)	94, 345, 532, 571, 798, 802, 873
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	430, 609
SduI	GDGCHC	2 cut(s)	256, 319
SetI	ASST	8 cut(s)	132, 271, 427, 487, 563, 613, 678, 685
SfaNI	GCATC	3 cut(s)	349, 780, 847
SfcI	CTRYAG	1 cut(s)	562
Sfr274I	CTCGAG	1 cut(s)	117
SinI	GGWCC	1 cut(s)	433
SlaI	CTCGAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	3 cut(s)	341, 378, 776
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
SphI	GCATGC	1 cut(s)	864
Sse9I	AATT	4 cut(s)	302, 453, 579, 634
SsiI	CCGC	2 cut(s)	240, 521
SspI	AATATT	1 cut(s)	399
SspMI	CTAG	2 cut(s)	270, 324
StyD4I	CCNGG	2 cut(s)	428, 607
TaaI	ACNGT	4 cut(s)	67, 566, 745, 821
TaqI	TCGA	5 cut(s)	118, 547, 797, 801, 872
TasI	AATT	4 cut(s)	302, 453, 579, 634
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	493, 794
Tru1I	TTAA	3 cut(s)	288, 297, 729
Tru9I	TTAA	3 cut(s)	288, 297, 729
TscAI	CASTG	3 cut(s)	256, 571, 748
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	2 cut(s)	113, 680
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	4 cut(s)	224, 315, 356, 570
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	3 cut(s)	256, 571, 748
Van91I	CCANNNNNTGG	1 cut(s)	659
VneI	GTGCAC	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	433
VspI	ATTAAT	2 cut(s)	297, 729
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	2 cut(s)	781, 864
XhoI	CTCGAG	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	457
XspI	CTAG	2 cut(s)	270, 324
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.