Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

47611204 .. 47612176

Gene Structure 973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG348300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGATGCAGTTGGGAGAATTTTGTGAGTCAAGTTCACTATGGGTCTGTTTGAGAACCCCTTGGCTGATGAGAGCTTTGTTGACCAGCTTGGAAGCCAGAGCCACCATCCTAAGTGCCATCACAGCTGCAGTAGACCCCAGCACCGAAATCATCTTCAGTGAAAGTCCCGGCGCTGATTTTGTCAAGGAAAACAACTTCTCCTATGCCATTGTTGTTGTTGGAGAGCTCCCTTATGCGGAGACAAACGGGGACAATTTAAATTTGACAATTGCACAACCGGGTCCAAGCACCATCACCAATGTATGTGGCAAAGTCAAGTGTGTGGTTGTAGTAATCTCTGGCCGTCCTGTTGTGATCGAACCCTACATTTCATTGATGGATGCTCTTGTGGCTGCATGGCTACCTGGAACTGAAGGTCAAGGAGTTACAGATGTTCTCTTTGGCGATTATTTACCGGCAAGCTTCCTAGGACTTGGTTCAAGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

162

Amino Acids

17.29

Weight (kDa)

4.32

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3_C	PF01915	35 - 153	9.3e-17	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	2 cut(s)	17, 259
AcuI	CTGAAG	2 cut(s)	139, 432
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	480
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	5 cut(s)	74, 87, 125, 226, 462
AluI	AGCT	5 cut(s)	74, 87, 125, 226, 462
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	233
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	125, 392
ApoI	RAATTY	2 cut(s)	17, 259
AspA2I	CCTAGG	1 cut(s)	466
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	281
AsuC2I	CCSGG	2 cut(s)	168, 279
AsuHPI	GGTGA	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	281
AvrII	CCTAGG	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	112, 379
BccI	CCATC	4 cut(s)	113, 125, 299, 370
BceAI	ACGGC	1 cut(s)	327
BciT130I	CCWGG	1 cut(s)	405
BcnI	CCSGG	2 cut(s)	168, 279
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	174
BisI	GCNGC	2 cut(s)	126, 393
BlnI	CCTAGG	1 cut(s)	466
BlsI	GCNGC	2 cut(s)	127, 394
Bme1390I	CCNGG	3 cut(s)	168, 279, 405
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	3 cut(s)	168, 279, 405
BmsI	GCATC	1 cut(s)	370
BpuMI	CCSGG	2 cut(s)	168, 279
BsaJI	CCNNGG	2 cut(s)	59, 466
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	59, 466
BseGI	GGATG	2 cut(s)	105, 385
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	112, 379
BseYI	CCCAGC	1 cut(s)	137
BshFI	GGCC	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	3 cut(s)	168, 278, 455
BslFI	GGGAC	2 cut(s)	150, 263
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	2 cut(s)	150, 263
BsnI	GGCC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	282
BspMAI	CTGCAG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	454
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	59, 466
BssMI	GATC	1 cut(s)	354
BssT1I	CCWWGG	2 cut(s)	59, 466
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	2 cut(s)	105, 385
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	357
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 389
BstNI	CCWGG	1 cut(s)	405
BstSCI	CCNGG	3 cut(s)	166, 277, 403
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	112, 379
BsuRI	GGCC	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	105, 385
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	460
CfoI	GCGC	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	281
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	1 cut(s)	396
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
DraI	TTTAAA	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	340
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	2 cut(s)	59, 466
Eco24I	GRGCYC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	2 cut(s)	139, 432
EcoICRI	GAGCTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	403
EcoT14I	CCWWGG	2 cut(s)	59, 466
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	2 cut(s)	59, 466
FaeI	CATG	1 cut(s)	399
FaiI	YATR	5 cut(s)	40, 204, 234, 304, 397
FaqI	GGGAC	2 cut(s)	150, 263
FatI	CATG	1 cut(s)	395
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	2 cut(s)	126, 393
FokI	GGATG	2 cut(s)	92, 392
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	126, 393
FspBI	CTAG	1 cut(s)	467
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	2 cut(s)	126, 393
GsaI	CCCAGC	1 cut(s)	141
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	3 cut(s)	168, 278, 455
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	399
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HindIII	AAGCTT	1 cut(s)	460
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	3 cut(s)	168, 278, 455
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	3 cut(s)	35, 81, 133
Hpy188III	TCNNGA	1 cut(s)	480
Hpy8I	GTNNAC	3 cut(s)	35, 81, 133
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4V	TGCA	4 cut(s)	7, 128, 272, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 389
HpyF3I	CTNAG	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	399
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	1 cut(s)	231
Lsp1109I	GCAGC	2 cut(s)	112, 379
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	467
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	1 cut(s)	145
MfeI	CAATTG	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	4 cut(s)	17, 253, 259, 267
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	199
MseI	TTAA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	3 cut(s)	168, 278, 455
MspR9I	CCNGG	3 cut(s)	168, 279, 405
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	122, 389
NciI	CCSGG	2 cut(s)	168, 279
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	1 cut(s)	399
NlaIV	GGNNCC	1 cut(s)	282
PkrI	GCNGC	2 cut(s)	127, 394
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	403
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	2 cut(s)	126, 393
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	3 cut(s)	168, 279, 405
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	7 cut(s)	76, 89, 127, 228, 406, 418, 464
SfaNI	GCATC	1 cut(s)	370
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	281
SmiI	ATTTAAAT	1 cut(s)	258
Sse9I	AATT	4 cut(s)	17, 253, 259, 267
SsiI	CCGC	1 cut(s)	236
SspMI	CTAG	1 cut(s)	467
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	3 cut(s)	166, 277, 403
StyI	CCWWGG	2 cut(s)	59, 466
SwaI	ATTTAAAT	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	486
TaqI	TCGA	1 cut(s)	357
TasI	AATT	4 cut(s)	17, 253, 259, 267
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	2 cut(s)	125, 392
TspDTI	ATGAA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	2 cut(s)	17, 259
XmaJI	CCTAGG	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.